Discovery and design of DNA and RNA ligase inhibitors in infectious microorganisms

December 2009, Vol. 4, No. 12 , Pages 1281-1294 (doi:10.1517/17460440903373617)
PhD
1University of California, Department of Pharmaceutical Sciences, 3110 Natural Sciences I, zot code 3958, Irvine, 92697, USA
†2Departments of Pharmaceutical Sciences and Computer Science, 3134C Natural Sciences I, zot code 3958, Irvine, 92697, USA +1 949 824 2559; +1 949 824 3385;
Author for correspondence



Background: Members of the nucleotidyltransferase superfamily known as DNA and RNA ligases carry out the enzymatic process of polynucleotide ligation. These guardians of genomic integrity share a three-step ligation mechanism, as well as common core structural elements. Both DNA and RNA ligases have experienced a surge of recent interest as chemotherapeutic targets for the treatment of a range of diseases, including bacterial infection, cancer and the diseases caused by the protozoan parasites known as trypanosomes. Objective: In this review, we will focus on efforts targeting pathogenic microorganisms; specifically, bacterial NAD+-dependent DNA ligases, which are promising broad-spectrum antibiotic targets, and ATP-dependent RNA-editing ligases from Trypanosoma brucei, the species responsible for the devastating neurodegenerative disease, African sleeping sickness. Conclusion: High-quality crystal structures of both NAD+-dependent DNA ligase and the T. brucei RNA-editing ligase have facilitated the development of a number of promising leads. For both targets, further progress will require surmounting permeability issues and improving selectivity and affinity.