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Michael Lynch, Farhan Ali, Tongtong Lin, Yaohai Wang, Jiahao Ni & Hongan Long. (2023) The divergence of mutation rates and spectra across the Tree of Life. EMBO reports.
Crossref
Crossref
Chun Wu, Nicholas J. Paradis, Phillip M. Lakernick & Mariya Hryb. (2023) L-shaped distribution of the relative substitution rate (c/μ) observed for SARS-COV-2's genome, inconsistent with the selectionist theory, the neutral theory and the nearly neutral theory but a near-neutral balanced selection theory: Implication on “neutralist-selectionist” debate. Computers in Biology and Medicine 153, pages 106522.
Crossref
Crossref
Pinkal H. Patel, Adarsh Jha & G. S. Chakraborthy. 2023. CADD and Informatics in Drug Discovery. CADD and Informatics in Drug Discovery
1
33
.
Frida Belinky, Anastassia Bykova, Vyacheslav Yurchenko & Igor B. Rogozin. (2022) No evidence for widespread positive selection on double substitutions within codons in primates and yeasts. Frontiers in Genetics 13.
Crossref
Crossref
Linda J Reha-Krantz & Myron F Goodman. (2020)
John W. (Jan) Drake: A Biochemical View of a Geneticist
Par Excellence
. Genetics 216:4, pages 827-836.
Crossref
Crossref
Frida Belinky, Itamar Sela, Igor B. Rogozin & Eugene V. Koonin. (2019) Crossing fitness valleys via double substitutions within codons. BMC Biology 17:1.
Crossref
Crossref
William Amos. (2019) Flanking heterozygosity influences the relative probability of different base substitutions in humans. Royal Society Open Science 6:9, pages 191018.
Crossref
Crossref
Bin Luo, Alanna K. Edge, Cornelia Tolg, Eva A. Turley, C. B. Dean, Kathleen A. Hill & R. J. Kulperger. (2018) Spatial statistical tools for genome-wide mutation cluster detection under a microarray probe sampling system. PLOS ONE 13:9, pages e0204156.
Crossref
Crossref
Anthony C. Woo, Louis Faure, Tanja Dapa & Ivan Matic. (2018)
Heterogeneity of spontaneous DNA replication errors in single isogenic
Escherichia coli
cells
. Science Advances 4:6.
Crossref
Crossref
Carlos Mariscal & Alexander Lerner. (2018) Five chances in evolution. Studies in History and Philosophy of Science Part A 69, pages 97-100.
Crossref
Crossref
Gilles Vergnaud, Cédric Midoux, Yann Blouin, Maria Bourkaltseva, Victor Krylov & Christine Pourcel. (2018) Transposition Behavior Revealed by High-Resolution Description of Pseudomonas Aeruginosa Saltovirus Integration Sites. Viruses 10:5, pages 245.
Crossref
Crossref
Lydia Robert, Jean Ollion, Jerome RobertXiaohu Song, Ivan Matic & Marina Elez. (2018) Mutation dynamics and fitness effects followed in single cells. Science 359:6381, pages 1283-1286.
Crossref
Crossref
Haiying Fan & Weibin Guo. (2018) A genome-wide investigation of microsatellite mismatches and the association with body mass among bird species. PeerJ 6, pages e4495.
Crossref
Crossref
Jean Claude Nshogozabahizi, Jonathan Dench & Stéphane Aris-Brosou. (2017) Widespread Historical Contingency in Influenza Viruses. Genetics 205:1, pages 409-420.
Crossref
Crossref
Igor B. RogozinFrida BelinkyVladimir PavlenkoSvetlana A. ShabalinaDavid M. Kristensen & Eugene V. Koonin. (2016) Evolutionary switches between two serine codon sets are driven by selection. Proceedings of the National Academy of Sciences 113:46, pages 13109-13113.
Crossref
Crossref
Helen K. Alexander, Stephanie I. Mayer & Sebastian Bonhoeffer. (2016) Population Heterogeneity in Mutation Rate Increases the Frequency of Higher-Order Mutants and Reduces Long-Term Mutational Load. Molecular Biology and Evolution, pages msw244.
Crossref
Crossref
Kin ChanDmitry A. Gordenin. (2015) Clusters of Multiple Mutations: Incidence and Molecular Mechanisms. Annual Review of Genetics 49:1, pages 243-267.
Crossref
Crossref
Stefan Helfrich, Eugen Pfeifer, Christina Krämer, Christian Carsten Sachs, Wolfgang Wiechert, Dietrich Kohlheyer, Katharina Nöh & Julia Frunzke. (2015) Live cell imaging of SOS and prophage dynamics in isogenic bacterial populations. Molecular Microbiology 98:4, pages 636-650.
Crossref
Crossref
Artem G. Lada, Sergei F. Kliver, Alok Dhar, Dmitrii E. Polev, Alexey E. Masharsky, Igor B. Rogozin & Youri I. Pavlov. (2015) Disruption of Transcriptional Coactivator Sub1 Leads to Genome-Wide Re-distribution of Clustered Mutations Induced by APOBEC in Active Yeast Genes. PLOS Genetics 11:5, pages e1005217.
Crossref
Crossref
Peter A Lind, Andrew D Farr & Paul B Rainey. (2015) Experimental evolution reveals hidden diversity in evolutionary pathways. eLife 4.
Crossref
Crossref
Wenjuan Zhu, David N. Cooper, Qiang Zhao, Ye Wang, Ruihong Liu, Qibin Li, Claude Férec, Yiming Wang & Jian-Min Chen. (2015) Concurrent Nucleotide Substitution Mutations in the Human Genome Are Characterized by a Significantly Decreased Transition/Transversion Ratio. Human Mutation 36:3, pages 333-341.
Crossref
Crossref
Hongan Long, Way Sung, Samuel F. Miller, Matthew S. Ackerman, Thomas G. Doak & Michael Lynch. (2015) Mutation Rate, Spectrum, Topology, and Context-Dependency in the DNA Mismatch Repair-Deficient Pseudomonas fluorescens ATCC948. Genome Biology and Evolution 7:1, pages 262-271.
Crossref
Crossref
William Amos & Laura N.S. Filipe. (2014) Microsatellite frequencies vary with body mass and body temperature in mammals, suggesting correlated variation in mutation rate. PeerJ 2, pages e663.
Crossref
Crossref
Maryam Zaheri, Linda Dib & Nicolas Salamin. (2014) A Generalized Mechanistic Codon Model. Molecular Biology and Evolution 31:9, pages 2528-2541.
Crossref
Crossref
Steven A. Roberts & Dmitry A. Gordenin. (2014) Clustered and genome-wide transient mutagenesis in human cancers: Hypermutation without permanent mutators or loss of fitness. BioEssays 36:4, pages 382-393.
Crossref
Crossref
Carolyn Lenz, Wilfried Haerty & G. Brian Golding. (2014) Increased Substitution Rates Surrounding Low-Complexity Regions within Primate Proteins. Genome Biology and Evolution 6:3, pages 655-665.
Crossref
Crossref
Jian-Min Chen, David N. Cooper & Claude Férec. (2014) A New and More Accurate Estimate of the Rate of Concurrent Tandem-Base Substitution Mutations in the Human Germline: ∼0.4% of the Single-Nucleotide Substitution Mutation Rate. Human Mutation 35:3, pages 392-394.
Crossref
Crossref
M. McGrath, N. C. Gey van Pittius, P. D. van Helden, R. M. Warren & D. F. Warner. (2013) Mutation rate and the emergence of drug resistance in Mycobacterium tuberculosis. Journal of Antimicrobial Chemotherapy 69:2, pages 292-302.
Crossref
Crossref
Daniel R Schrider, David Houle, Michael Lynch & Matthew W Hahn. (2013)
Rates and Genomic Consequences of Spontaneous Mutational Events in
Drosophila melanogaster
. Genetics 194:4, pages 937-954.
Crossref
Crossref
Evgueny Kroll, Scott Coyle, Barbara Dunn, Gregory Koniges, Anthony Aragon, Jeremy Edwards & Frank Rosenzweig. (2013) Starvation-Associated Genome Restructuring Can Lead to Reproductive Isolation in Yeast. PLoS ONE 8:7, pages e66414.
Crossref
Crossref
William Amos. (2013) Variation in Heterozygosity Predicts Variation in Human Substitution Rates between Populations, Individuals and Genomic Regions. PLoS ONE 8:4, pages e63048.
Crossref
Crossref
Chandan Shee, P. J. Hastings & Susan M. Rosenberg. 2013. Stress-Induced Mutagenesis. Stress-Induced Mutagenesis
21
39
.
Chandan Shee, Janet L. Gibson & Susan M. Rosenberg. (2012) Two Mechanisms Produce Mutation Hotspots at DNA Breaks in Escherichia coli. Cell Reports 2:4, pages 714-721.
Crossref
Crossref
Steven A. Roberts, Joan Sterling, Cole Thompson, Shawn Harris, Deepak Mav, Ruchir Shah, Leszek J. Klimczak, Gregory V. Kryukov, Ewa Malc, Piotr A. Mieczkowski, Michael A. Resnick & Dmitry A. Gordenin. (2012) Clustered Mutations in Yeast and in Human Cancers Can Arise from Damaged Long Single-Strand DNA Regions. Molecular Cell 46:4, pages 424-435.
Crossref
Crossref
Bruce Gottlieb, Lenore K. Beitel, Abbesha Nadarajah, Miltiadis Paliouras & Mark Trifiro. (2012) The androgen receptor gene mutations database: 2012 update. Human Mutation 33:5, pages 887-894.
Crossref
Crossref
Jian-Min Chen, Claude F?rec & David N. Cooper. (2012) Transient hypermutability, chromothripsis and replication-based mechanisms in the generation of concurrent clustered mutations. Mutation Research/Reviews in Mutation Research 750:1, pages 52-59.
Crossref
Crossref
A. Forche, D. Abbey, T. Pisithkul, M. A. Weinzierl, T. Ringstrom, D. Bruck, K. Petersen & J. Berman. (2011) Stress Alters Rates and Types of Loss of Heterozygosity in Candida albicans. mBio 2:4.
Crossref
Crossref
Stephanie Sun, Ben J. Evans & G. Brian Golding. (2011) “Patchy-Tachy” Leads to False Positives for Recombination. Molecular Biology and Evolution 28:9, pages 2549-2559.
Crossref
Crossref
Abdul Qawee Rani, Rusdy Ghazali Malueka, Teguh Haryo Sasongko, Hiroyuki Awano, Tomoko Lee, Mariko Yagi, Bin Alwi Zilfalil, A.B. Razak Salmi, Yasuhiro Takeshima, Z.A.M.H. Zabidi-Hussin & Masafumi Matsuo. (2011) Two closely spaced nonsense mutations in the DMD gene in a Malaysian family. Molecular Genetics and Metabolism 103:3, pages 303-304.
Crossref
Crossref
Daniel R. Schrider, Jonathan N. Hourmozdi & Matthew W. Hahn. (2011) Pervasive Multinucleotide Mutational Events in Eukaryotes. Current Biology 21:12, pages 1051-1054.
Crossref
Crossref
William Amos & Clare Bryant. (2010) Using human demographic history to infer natural selection reveals contrasting patterns on different families of immune genes. Proceedings of the Royal Society B: Biological Sciences 278:1711, pages 1587-1594.
Crossref
Crossref
Jian-Min Chen, Claude Férec & David N. Cooper. (2010) Gene Conversion in Human Genetic Disease. Genes 1:3, pages 550-563.
Crossref
Crossref
Xiaoqian Jiang, Baolin Mu, Zhuoran Huang, Mingjing Zhang, Xiaojuan Wang & Shiheng Tao. (2010) Impacts of mutation effects and population size on mutation rate in asexual populations: a simulation study. BMC Evolutionary Biology 10:1.
Crossref
Crossref
Alan M. Magee, Sue Aspinall, Danny W. Rice, Brian P. Cusack, Marie Sémon, Antoinette S. Perry, Saša Stefanović, Dan Milbourne, Susanne Barth, Jeffrey D. Palmer, John C. Gray, Tony A. Kavanagh & Kenneth H. Wolfe. (2010) Localized hypermutation and associated gene losses in legume chloroplast genomes. Genome Research 20:12, pages 1700-1710.
Crossref
Crossref
Jacques Ninio. (2010) Frail Hypotheses in Evolutionary Biology. PLoS Genetics 6:9, pages e1001067.
Crossref
Crossref
William Amos. (2010) Mutation Biases and Mutation Rate Variation Around Very Short Human Microsatellites Revealed by Human–Chimpanzee–Orangutan Genomic Sequence Alignments. Journal of Molecular Evolution 71:3, pages 192-201.
Crossref
Crossref
Yong Yang, Dmitry A. Gordenin & Michael A. Resnick. (2010) A single-strand specific lesion drives MMS-induced hyper-mutability at a double-strand break in yeast. DNA Repair 9:8, pages 914-921.
Crossref
Crossref
Libertad García-Villada & John W. Drake. (2010) Mutational clusters generated by non-processive polymerases: A case study using DNA polymerase β in vitro. DNA Repair 9:8, pages 871-878.
Crossref
Crossref
Marina Elez, Andrew W. Murray, Li-Jun Bi, Xian-En Zhang, Ivan Matic & Miroslav Radman. (2010) Seeing Mutations in Living Cells. Current Biology 20:16, pages 1432-1437.
Crossref
Crossref
M. Lynch & A. Abegg. (2010) The Rate of Establishment of Complex Adaptations. Molecular Biology and Evolution 27:6, pages 1404-1414.
Crossref
Crossref
Bruce Gottlieb, Lenore K. Beitel, Carlos Alvarado & Mark A. Trifiro. (2010) Selection and mutation in the “new” genetics: an emerging hypothesis. Human Genetics 127:5, pages 491-501.
Crossref
Crossref
Gaël Thébaud, Joël Chadœuf, Marco J. Morelli, John W. McCauley & Daniel T. Haydon. (2009) The relationship between mutation frequency and replication strategy in positive-sense single-stranded RNA viruses. Proceedings of the Royal Society B: Biological Sciences 277:1682, pages 809-817.
Crossref
Crossref
Jian-Min Chen, Claude Férec & David N. Cooper. (2009) Closely spaced multiple mutations as potential signatures of transient hypermutability in human genes. Human Mutation 30:10, pages 1435-1448.
Crossref
Crossref
Jan Biro. (2008) Discovery of Proteomic Code with mRNA Assisted Protein Folding. International Journal of Molecular Sciences 9:12, pages 2424-2446.
Crossref
Crossref
Yong Yang, Joan Sterling, Francesca Storici, Michael A. Resnick & Dmitry A. Gordenin. (2008) Hypermutability of Damaged Single-Strand DNA Formed at Double-Strand Breaks and Uncapped Telomeres in Yeast Saccharomyces cerevisiae. PLoS Genetics 4:11, pages e1000264.
Crossref
Crossref
Zhenbin Chen, Jinong Feng, Carolyn H. Buzin & Steve S. Sommer. (2008) Epidemiology of Doublet/Multiplet Mutations in Lung Cancers: Evidence that a Subset Arises by Chronocoordinate Events. PLoS ONE 3:11, pages e3714.
Crossref
Crossref
Siobain Duffy, Laura A. Shackelton & Edward C. Holmes. (2008) Rates of evolutionary change in viruses: patterns and determinants. Nature Reviews Genetics 9:4, pages 267-276.
Crossref
Crossref