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Amyloid

The Journal of Protein Folding Disorders

Volume 15, 2008 - Issue 3

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Original Article

Size and morphology of toxic oligomers of amyloidogenic proteins: a case study of human stefin B

Slavko Čeru Departments of Biochemistry, Molecular and Structural Biology

S Jenko-Kokalj Departments of Biochemistry, Molecular and Structural Biology

Sabina Rabzelj Departments of Biochemistry, Molecular and Structural Biology

Miha Škarabot Condensed Matter Physics Jožef Stefan Institute, Jamova 39, 1000, Ljubljana, Slovenia

Ion Gutierrez-Aguirre Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, 1000, Ljubljana, Slovenia

Nataša Kopitar-Jerala Departments of Biochemistry, Molecular and Structural Biology

Gregor Anderluh Department of Biology, Biotechnical Faculty, University of Ljubljana, Večna pot 111, 1000, Ljubljana, Slovenia

Dušan Turk Departments of Biochemistry, Molecular and Structural Biology

Vito Turk Departments of Biochemistry, Molecular and Structural Biology

Eva Žerovnik Departments of Biochemistry, Molecular and Structural BiologyCorrespondence[email protected]

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Pages 147-159 | Published online: 06 Jul 2009

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https://doi.org/10.1080/13506120802193555

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Eva Žerovnik. (2022) Human stefin B: from its structure, folding, and aggregation to its function in health and disease. Frontiers in Molecular Neuroscience 15.
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Göklem Üner, Erdal Bedir, Onur Serçinoğlu & Petek Ballar Kırmızıbayrak. (2022) Non-apoptotic cell death induction via sapogenin based supramolecular particles. Scientific Reports 12:1.
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Eva Žerovnik. (2021) Viroporins vs. Other Pore-Forming Proteins: What Lessons Can We Take?. Frontiers in Chemistry 9.
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Eva Žerovnik. (2019) Possible Mechanisms by which Stefin B could Regulate Proteostasis and Oxidative Stress. Cells 8:1, pages 70.
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Eva Žerovnik. (2016) Putative alternative functions of human stefin B (cystatin B): binding to amyloid‐beta, membranes, and copper. Journal of Molecular Recognition 30:1.
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Matjaž Žganec, Eva Žerovnik & Brigita Urbanc. (2015) Assembly of Stefin B into Polymorphic Oligomers Probed by Discrete Molecular Dynamics. Journal of Chemical Theory and Computation 11:5, pages 2355-2366.
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Mira Polajnar, Tina Zavašnik-Bergant, Nataša Kopitar-Jerala, Magda Tušek-Žnidarič & Eva Žerovnik. (2014) Gain in toxic function of stefin B EPM1 mutants aggregates: Correlation between cell death, aggregate number/size and oxidative stress. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1843:9, pages 2089-2099.
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Matjaž Žganec & Eva Žerovnik. (2014) Amyloid fibrils compared to peptide nanotubes. Biochimica et Biophysica Acta (BBA) - General Subjects 1840:9, pages 2944-2952.
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Mira Polajnar, Tina Zavašnik-Bergant, Katja Škerget, Matej Vizovišek, Robert Vidmar, Marko Fonović, Nataša Kopitar-Jerala, Uroš Petrovič, Susanna Navarro, Salvador Ventura & Eva Žerovnik. (2014) Human Stefin B Role in Cell's Response to Misfolded Proteins and Autophagy. PLoS ONE 9:7, pages e102500.
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Annalisa Relini, Nadia Marano & Alessandra Gliozzi. (2014) Probing the interplay between amyloidogenic proteins and membranes using lipid monolayers and bilayers. Advances in Colloid and Interface Science 207, pages 81-92.
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Eva Žerovnik. 2014. Bio-nanoimaging. Bio-nanoimaging 263 270 .

Cristina Cecchi & Massimo Stefani. (2013) The amyloid-cell membrane system. The interplay between the biophysical features of oligomers/fibrils and cell membrane defines amyloid toxicity. Biophysical Chemistry 182, pages 30-43.
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Ajda Taler-Verčič, Tiina Kirsipuu, Merlin Friedemann, Andra Noormägi, Mira Polajnar, Julia Smirnova, Magda Žnidarič, Matjaž Žganec, Miha Škarabot, Andrej Vilfan, Rosemary Staniforth, Peep Palumaa & Eva Žerovnik. (2013) The Role of Initial Oligomers in Amyloid Fibril Formation by Human Stefin B. International Journal of Molecular Sciences 14:9, pages 18362-18384.
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Mira Polajnar, Robert Vidmar, Matej Vizovišek, Marko Fonović, Nataša Kopitar-Jerala & Eva Žerovnik. (2013) Influence of partial unfolding and aggregation of human stefin B (cystatin B) EPM1 mutants G50E and Q71P on selective cleavages by cathepsins B and S. Biological Chemistry 394:6, pages 783-790.
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Massimo Stefani. (2012) Structural features and cytotoxicity of amyloid oligomers: Implications in Alzheimer's disease and other diseases with amyloid deposits. Progress in Neurobiology 99:3, pages 226-245.
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Damien Hall & Li Huang. (2012) On the use of size exclusion chromatography for the resolution of mixed amyloid aggregate distributions: I. Equilibrium partition models. Analytical Biochemistry 426:1, pages 69-85.
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Scott L. Crick & Rohit V. Pappu. 2012. Protein and Peptide Folding, Misfolding, and Non-Folding. Protein and Peptide Folding, Misfolding, and Non-Folding 413 440 .

Yingxia Liu, Haiyan Wei, Jianguo Qu, Jianwei Wang & Tao Hung. (2011) Prefibrillar aggregates of yeast prion Sup35NM and its variant are toxic to mammalian cells. Neurological Sciences 32:6, pages 1147-1152.
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Aida Smajlović, Selma Berbić & Eva Žerovnik. (2011) The cross-road between the mechanisms of protein folding and aggregation; study of human stefin B and its H75W mutant. Biochemical and Biophysical Research Communications 415:2, pages 337-341.
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Eva Žerovnik, Veronika Stoka, Andreja Mirtič, Gregor Gunčar, Jože Grdadolnik, Rosemary A. Staniforth, Dušan Turk & Vito Turk. (2011) Mechanisms of amyloid fibril formation – focus on domain‐swapping. The FEBS Journal 278:13, pages 2263-2282.
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Dun-Sheng Yang, Philip Stavrides, Panaiyur S. Mohan, Susmita Kaushik, Asok Kumar, Masuo Ohno, Stephen D. Schmidt, Daniel Wesson, Urmi Bandyopadhyay, Ying Jiang, Monika Pawlik, Corrinne M. Peterhoff, Austin J. Yang, Donald A. Wilson, Peter St George-Hyslop, David Westaway, Paul M. Mathews, Efrat Levy, Ana M. Cuervo & Ralph A. Nixon. (2011) Reversal of autophagy dysfunction in the TgCRND8 mouse model of Alzheimer's disease ameliorates amyloid pathologies and memory deficits. Brain 134:1, pages 258-277.
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Eva Žerovnik, Rosemary A. Staniforth & Dušan Turk. (2010) Amyloid fibril formation by human stefins: Structure, mechanism & putative functions. Biochimie 92:11, pages 1597-1607.
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Slavko Čeru, Robert Layfield, Tina Zavašnik‐Bergant, Urška Repnik, Nataša Kopitar‐Jerala, Vito Turk & Eva Žerovnik. (2012) Intracellular aggregation of human stefin B: confocal and electron microscopy study. Biology of the Cell 102:6, pages 319-334.
Crossref

Katja Škerget, Ajda Taler-Verčič, Andrej Bavdek, Vesna Hodnik, Slavko Čeru, Magda Tušek-Žnidarič, Tiina Kumm, Didier Pitsi, Maruša Pompe-Novak, Peep Palumaa, Salvador Soriano, Nataša Kopitar-Jerala, Vito Turk, Gregor Anderluh & Eva Žerovnik. (2010) Interaction between Oligomers of Stefin B and Amyloid-β in Vitro and in Cells. Journal of Biological Chemistry 285:5, pages 3201-3210.
Crossref

Massimo Stefani. 2010. Protein Misfolding and Cellular Stress in Disease and Aging. Protein Misfolding and Cellular Stress in Disease and Aging 25 41 .

Bruce L. Kagan & Jyothi Thundimadathil. 2010. Proteins Membrane Binding and Pore Formation. Proteins Membrane Binding and Pore Formation 150 167 .

Katja Škerget, Andrej Vilfan, Maruša Pompe-Novak, Vito Turk, Jonathan P. Waltho, Dušan Turk & Eva Žerovnik. (2009) The mechanism of amyloid-fibril formation by stefin B: Temperature and protein concentration dependence of the rates. Proteins: Structure, Function, and Bioinformatics 74:2, pages 425-436.
Crossref

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Size and morphology of toxic oligomers of amyloidogenic proteins: a case study of human stefin B

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Size and morphology of toxic oligomers of amyloidogenic proteins: a case study of human stefin B

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