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Coevolution

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Volume 2, 2014 - Issue 1

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An improved node mapping algorithm for the cophylogeny reconstruction problem

Benjamin DrinkwaterSchool of Information Technologies, University of Sydney, Sydney, AustraliaCorrespondence[email protected]

Michael A. CharlestonSchool of Information Technologies, University of Sydney, Sydney, Australia

Pages 1-17 | Received 11 Dec 2013, Accepted 20 Jan 2014, Published online: 24 Apr 2014

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https://doi.org/10.1080/23256214.2014.906070
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Hugo Menet, Vincent Daubin & Eric Tannier. (2022) Phylogenetic reconciliation. PLOS Computational Biology 18:11, pages e1010621.
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Matthew C. Hutchinson, E. Fernando Cagua, Juan A. Balbuena, Daniel B. Stouffer & Timothée Poisot. (2017) paco: implementing Procrustean Approach to Cophylogeny in R. Methods in Ecology and Evolution 8:8, pages 932-940.
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Benjamin Drinkwater & Michael A. Charleston. (2016) Towards sub-quadratic time and space complexity solutions for the dated tree reconciliation problem. Algorithms for Molecular Biology 11:1.
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David A. Morrison. (2016) Genealogies: Pedigrees and Phylogenies are Reticulating Networks Not Just Divergent Trees. Evolutionary Biology 43:4, pages 456-473.
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Andrés Martínez-Aquino. (2016) Phylogenetic framework for coevolutionary studies: a compass for exploring jungles of tangled trees. Current Zoology 62:4, pages 393-403.
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Maria Abou Chakra, Christian Hilbe & Arne Traulsen. (2016) Coevolutionary interactions between farmers and mafia induce host acceptance of avian brood parasites. Royal Society Open Science 3:5, pages 160036.
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Benjamin DrinkwaterMichael A. Charleston. (2016) RASCAL: A Randomized Approach for Coevolutionary Analysis. Journal of Computational Biology 23:3, pages 218-227.
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Adriaan Engelbrecht, Sonja Matthee, Nina du Toit & Conrad A. Matthee. (2016) Limited dispersal in an ectoparasitic mite, Laelaps giganteus , contributes to significant phylogeographic congruence with the rodent host, Rhabdomys . Molecular Ecology 25:4, pages 1006-1021.
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M.A. Charleston. 2016. Encyclopedia of Evolutionary Biology. Encyclopedia of Evolutionary Biology 381 386 .

Benjamin Drinkwater & Michael A. Charleston. (2015) A time and space complexity reduction for coevolutionary analysis of trees generated under both a Yule and Uniform model. Computational Biology and Chemistry 57, pages 61-71.
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C. Baudet, B. Donati, B. Sinaimeri, P. Crescenzi, C. Gautier, C. Matias & M.-F. Sagot. (2015) Cophylogeny Reconstruction via an Approximate Bayesian Computation. Systematic Biology 64:3, pages 416-431.
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Benjamin Drinkwater & Michael A. Charleston. 2015. Algorithms in Bioinformatics. Algorithms in Bioinformatics 93 107 .

Benjamin Drinkwater & Michael A Charleston. (2014) Introducing TreeCollapse: a novel greedy algorithm to solve the cophylogeny reconstruction problem. BMC Bioinformatics 15:S16.
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An improved node mapping algorithm for the cophylogeny reconstruction problem

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An improved node mapping algorithm for the cophylogeny reconstruction problem

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