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Theme: Biomarker Diagnostics - Reviews

Mass spectrometric protein maps for biomarker discovery and clinical research

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Pages 811-825 | Published online: 09 Jan 2014

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Sandra I. Anjo & Bruno Manadas. (2018) A translational view of cells' secretome analysis - from untargeted proteomics to potential circulating biomarkers. Biochimie 155, pages 37-49.
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Crossref
L. M. Crowther, M. Poms & Barbara Plecko. (2018) Multiomics tools for the diagnosis and treatment of rare neurological disease. Journal of Inherited Metabolic Disease 41:3, pages 425-434.
Crossref
Justyna Fert-BoberChristopher I. MurraySarah J. ParkerJennifer E. Van Eyk. (2018) Precision Profiling of the Cardiovascular Post-Translationally Modified Proteome. Circulation Research 122:9, pages 1221-1237.
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Crossref
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Rémi Longuespée, Rita Casadonte, Kristina Schwamborn, David Reuss, Daniel Kazdal, Katharina Kriegsmann, Andreas von Deimling, Wilko Weichert, Peter Schirmacher, Jörg Kriegsmann & Mark Kriegsmann. (2018) Proteomics in Pathology. PROTEOMICS 18:2, pages 1700361.
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H. Li, J. Han, J. Pan, T. Liu, C. E. Parker & C. H. Borchers. (2017) Current trends in quantitative proteomics – an update. Journal of Mass Spectrometry 52:5, pages 319-341.
Crossref
Veronika Vidova & Zdenek Spacil. (2017) A review on mass spectrometry-based quantitative proteomics: Targeted and data independent acquisition. Analytica Chimica Acta 964, pages 7-23.
Crossref
Andrew J. Percy, Sarah A. Michaud, Armando Jardim, Nicholas J. Sinclair, Suping Zhang, Yassene Mohammed, Andrea L. Palmer, Darryl B. Hardie, Juncong Yang, Andre M. LeBlanc & Christoph H. Borchers. (2017) Multiplexed MRM-based assays for the quantitation of proteins in mouse plasma and heart tissue. PROTEOMICS 17:7, pages 1600097.
Crossref
Anuli Christiana Uzozie, Nathalie Selevsek, Asa Wahlander, Paolo Nanni, Jonas Grossmann, Achim Weber, Federico Buffoli & Giancarlo Marra. (2017) Targeted Proteomics for Multiplexed Verification of Markers of Colorectal Tumorigenesis. Molecular & Cellular Proteomics 16:3, pages 407-427.
Crossref
Konstantina Psatha, Laxmikanth Kollipara, Chrysanthi Voutyraki, Peter Divanach, Albert Sickmann, George Z. Rassidakis, Elias Drakos & Michalis Aivaliotis. (2017) Deciphering lymphoma pathogenesis via state-of-the-art mass spectrometry-based quantitative proteomics. Journal of Chromatography B 1047, pages 2-14.
Crossref
Jakub Faktor, Rita Sucha, Vendula Paralova, Yansheng Liu & Pavel Bouchal. (2017) Comparison of targeted proteomics approaches for detecting and quantifying proteins derived from human cancer tissues. PROTEOMICS 17:5, pages 1600323.
Crossref
Sandra Isabel Anjo, Cátia Santa & Bruno Manadas. (2017) SWATH-MS as a tool for biomarker discovery: From basic research to clinical applications. PROTEOMICS 17:3-4, pages 1600278.
Crossref
Jiatao Lou, LingFei Zhang, Shaogang Lv, Chenzi Zhang & Shuai Jiang. (2017) Biomarkers for Hepatocellular Carcinoma. Biomarkers in Cancer 9, pages 1179299X1668464.
Crossref
Christoph Krisp & Mark P. Molloy. 2017. Serum/Plasma Proteomics. Serum/Plasma Proteomics 373 383 .
Roland Bruderer, Oliver M. Bernhardt, Tejas Gandhi & Lukas Reiter. (2016) High‐precision iRT prediction in the targeted analysis of data‐independent acquisition and its impact on identification and quantitation. PROTEOMICS 16:15-16, pages 2246-2256.
Crossref
Tujin Shi, Ehwang Song, Song Nie, Karin D. Rodland, Tao Liu, Wei‐Jun Qian & Richard D. Smith. (2016) Advances in targeted proteomics and applications to biomedical research. PROTEOMICS 16:15-16, pages 2160-2182.
Crossref
Kenji Nakamura, Mio Hirayama-Kurogi, Shingo Ito, Takuya Kuno, Toshihiro Yoneyama, Wataru Obuchi, Tetsuya Terasaki & Sumio Ohtsuki. (2016) Large-scale multiplex absolute protein quantification of drug-metabolizing enzymes and transporters in human intestine, liver, and kidney microsomes by SWATH-MS: Comparison with MRM/SRM and HR-MRM/PRM. PROTEOMICS 16:15-16, pages 2106-2117.
Crossref
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Verena Paulitschke, Ossia Eichhoff, Phil F. Cheng, Mitchell P. Levesque & Christoph Höller. (2016) Proteomics approaches to understanding mitogen-activated protein kinase inhibitor resistance in melanoma. Current Opinion in Oncology 28:2, pages 172-179.
Crossref
Feifei Xu, Ting Yang & Yun Chen. (2015) Quantification of microRNA by DNA–Peptide Probe and Liquid Chromatography–Tandem Mass Spectrometry-Based Quasi-Targeted Proteomics. Analytical Chemistry 88:1, pages 754-763.
Crossref
J. Zoidakis & D. Chatziharalambous. 2016. Reference Module in Chemistry, Molecular Sciences and Chemical Engineering. Reference Module in Chemistry, Molecular Sciences and Chemical Engineering.
Yingxin Zhao & Allan R. Brasier. 2016. Modern Proteomics – Sample Preparation, Analysis and Practical Applications. Modern Proteomics – Sample Preparation, Analysis and Practical Applications 493 514 .
Juan I. Castrillo & Stephen G. Oliver. 2016. Systems Biology of Alzheimer's Disease. Systems Biology of Alzheimer's Disease 3 48 .
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Crossref
Francesca Forini, Nadia Ucciferri, Claudia Kusmic, Giuseppina Nicolini, Antonella Cecchettini, Silvia Rocchiccioli, Lorenzo Citti & Giorgio Iervasi. (2015) Low T3 State Is Correlated with Cardiac Mitochondrial Impairments after Ischemia Reperfusion Injury: Evidence from a Proteomic Approach. International Journal of Molecular Sciences 16:11, pages 26687-26705.
Crossref
Aivett Bilbao, Ying Zhang, Emmanuel Varesio, Jeremy Luban, Caterina Strambio-De-Castillia, Frédérique Lisacek & Gérard Hopfgartner. (2015) Ranking Fragment Ions Based on Outlier Detection for Improved Label-Free Quantification in Data-Independent Acquisition LC–MS/MS. Journal of Proteome Research 14:11, pages 4581-4593.
Crossref
M. G. Zavialova, V. G. Zgoda, O. N. Kharybin & E. N. Nikolayev. (2015) Preparation of a peptide template for the SRM method by means of in vitro phosphorylation. Biochemistry (Moscow) Supplement Series B: Biomedical Chemistry 9:4, pages 343-350.
Crossref
Cristina Ruiz-Romero, Valentina Calamia, Juan Pablo Albar, José Ignacio Casal, Fernando J. Corrales, Patricia Fernández-Puente, Concha Gil, Jesús Mateos, Fernando Vivanco & Francisco J. Blanco. (2015) The Spanish biology/disease initiative within the human proteome project: Application to rheumatic diseases. Journal of Proteomics 127, pages 406-413.
Crossref
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Crossref
Kanchan Vaswani, Keith Ashman, Sarah Reed, Carlos Salomon, Suchismita Sarker, Jose A. Arraztoa, Alejandra Pérez-Sepúlveda, Sebastian E. Illanes, David Kvaskoff, Murray D. Mitchell & Gregory E. Rice. (2015) Applying SWATH Mass Spectrometry to Investigate Human Cervicovaginal Fluid During the Menstrual Cycle1. Biology of Reproduction 93:2.
Crossref
Christoph Krisp, Hao Yang, Remco van Soest & Mark P Molloy. (2015) Online Peptide Fractionation Using a Multiphasic Microfluidic Liquid Chromatography Chip Improves Reproducibility and Detection Limits for Quantitation in Discovery and Targeted Proteomics*. Molecular & Cellular Proteomics 14:6, pages 1708-1719.
Crossref
Anne von Zychlinski & Torsten Kleffmann. (2015) Dissecting the proteome of lipoproteins: New biomarkers for cardiovascular diseases?. Translational Proteomics 7, pages 30-39.
Crossref
Shiying Shao, Tiannan Guo & Ruedi Aebersold. (2015) Mass spectrometry-based proteomic quest for diabetes biomarkers. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1854:6, pages 519-527.
Crossref
Dario Di Silvestre, Francesca Brambilla, Sara Motta & Pierluigi Mauri. 2015. Biomarker Validation. Biomarker Validation 163 182 .
Gilles Schnell, Amandine Boeuf, Benoît Westermann, Benoît Jaulhac, Dan Lipsker, Christine Carapito, Nathalie Boulanger & Laurence Ehret-Sabatier. (2015) Discovery and Targeted Proteomics on Cutaneous Biopsies Infected by Borrelia to Investigate Lyme Disease*. Molecular & Cellular Proteomics 14:5, pages 1254-1264.
Crossref
Roland Bruderer, Oliver M. Bernhardt, Tejas Gandhi, Saša M. Miladinović, Lin-Yang Cheng, Simon Messner, Tobias Ehrenberger, Vito Zanotelli, Yulia Butscheid, Claudia Escher, Olga Vitek, Oliver Rinner & Lukas Reiter. (2015) Extending the Limits of Quantitative Proteome Profiling with Data-Independent Acquisition and Application to Acetaminophen-Treated Three-Dimensional Liver Microtissues. Molecular & Cellular Proteomics 14:5, pages 1400-1410.
Crossref
Tatjana Sajic, Yansheng Liu & Ruedi Aebersold. (2015) Using data-independent, high-resolution mass spectrometry in protein biomarker research: Perspectives and clinical applications. PROTEOMICS - Clinical Applications 9:3-4, pages 307-321.
Crossref
Aivett Bilbao, Emmanuel Varesio, Jeremy Luban, Caterina Strambio-De-Castillia, Gérard Hopfgartner, Markus Müller & Frédérique Lisacek. (2015) Processing strategies and software solutions for data-independent acquisition in mass spectrometry. PROTEOMICS 15:5-6, pages 964-980.
Crossref
Yansheng Liu, Alfonso Buil, Ben C Collins, Ludovic CJ Gillet, Lorenz C Blum, Lin‐Yang Cheng, Olga Vitek, Jeppe Mouritsen, Genevieve Lachance, Tim D Spector, Emmanouil T Dermitzakis & Ruedi Aebersold. (2015) Quantitative variability of 342 plasma proteins in a human twin population. Molecular Systems Biology 11:2.
Crossref
Ksenia J. Groh & Marc J.-F. Suter. (2015) Stressor-induced proteome alterations in zebrafish: A meta-analysis of response patterns. Aquatic Toxicology 159, pages 1-12.
Crossref
Amit Kumar, Deniz Baycin-Hizal, Joseph Shiloach, Michael A. Bowen & Michael J. Betenbaugh. (2015) Coupling enrichment methods with proteomics for understanding and treating disease. PROTEOMICS - Clinical Applications 9:1-2, pages 33-47.
Crossref
Yujing J. Heng, Lorne Taylor, Brett G. Larsen, Hon Nian Chua, Soke May Pung, Mary W. F. Lee, Monika Tucholska, Stephen Tate, Peter Kupchak, Craig E. Pennell, Tony Pawson & Stephen J. Lye. (2014) Albumin Decrease Is Associated with Spontaneous Preterm Delivery within 48 h in Women with Threatened Preterm Labor. Journal of Proteome Research 14:1, pages 457-466.
Crossref
Bertrand Rochat. (2015) Is there a future for metabotyping in clinical laboratories?. Bioanalysis 7:1, pages 5-8.
Crossref
Rita Ferreira, Daniel Moreira-Gonçalves, Ana Lúcia Azevedo, José Alberto Duarte, Francisco Amado & Rui Vitorino. (2014) Unraveling the exercise-related proteome signature in heart. Basic Research in Cardiology 110:1.
Crossref
Mika Gustafsson, Colm E Nestor, Huan Zhang, Albert-László Barabási, Sergio Baranzini, Sören Brunak, Kian Fan Chung, Howard J Federoff, Anne-Claude Gavin, Richard R Meehan, Paola Picotti, Miguel Ángel Pujana, Nikolaus Rajewsky, Kenneth GC Smith, Peter J Sterk, Pablo Villoslada & Mikael Benson. (2014) Modules, networks and systems medicine for understanding disease and aiding diagnosis. Genome Medicine 6:10.
Crossref
Anton B. Iliuk, Justine V. Arrington & Weiguo Andy Tao. (2014) Analytical challenges translating mass spectrometry-based phosphoproteomics from discovery to clinical applications. ELECTROPHORESIS 35:24, pages 3430-3440.
Crossref
M.G. ZavialovaV.G. ZgodaO.N. KharybinE.N. Nikolayev. (2014) In vitro protein phosphorylation as a template for SRM method development. Biomeditsinskaya Khimiya 60:6, pages 668-676.
Crossref
George Rosenberger, Ching Chiek Koh, Tiannan Guo, Hannes L. Röst, Petri Kouvonen, Ben C. Collins, Moritz Heusel, Yansheng Liu, Etienne Caron, Anton Vichalkovski, Marco Faini, Olga T. Schubert, Pouya Faridi, H. Alexander Ebhardt, Mariette Matondo, Henry Lam, Samuel L. Bader, David S. Campbell, Eric W. Deutsch, Robert L. Moritz, Stephen Tate & Ruedi Aebersold. (2014) A repository of assays to quantify 10,000 human proteins by SWATH-MS. Scientific Data 1:1.
Crossref
Yansheng Liu, Jing Chen, Atul Sethi, Qing K. Li, Lijun Chen, Ben Collins, Ludovic C.J. Gillet, Bernd Wollscheid, Hui Zhang & Ruedi Aebersold. (2014) Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness. Molecular & Cellular Proteomics 13:7, pages 1753-1768.
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Ksenia J. Groh & Marc J.-F. Suter. 2014. Detection of Chemical, Biological, Radiological and Nuclear Agents for the Prevention of Terrorism. Detection of Chemical, Biological, Radiological and Nuclear Agents for the Prevention of Terrorism 149 167 .
Feng Yu, Yifan Chen, Bo Liu, Tao Wang, Zhaoliang Ding, Ziwen Yi, Yiping Zhu & Jing Li. (2022) Comparative Analysis of Urinary Proteins in Donkey Foals and Adult Donkeys. SSRN Electronic Journal.
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