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Editorials

The potential clinical impact of the tissue-based map of the human proteome

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Massoud Saidijam, Sonia Azizpour & Simon G. Patching. (2017) Amino acid composition analysis of human secondary transport proteins and implications for reliable membrane topology prediction. Journal of Biomolecular Structure and Dynamics 35:5, pages 929-949.
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Sonia Gavasso, Stein-Erik Gullaksen, Jørn Skavland & Bjørn T. Gjertsen. (2016) Single-cell proteomics: potential implications for cancer diagnostics. Expert Review of Molecular Diagnostics 16:5, pages 579-589.
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Li Zhou, Kui Wang, Qifu Li, Edouard C. Nice, Haiyuan Zhang & Canhua Huang. (2016) Clinical proteomics-driven precision medicine for targeted cancer therapy: current overview and future perspectives. Expert Review of Proteomics 13:4, pages 367-381.
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Simon G. Patching. (2015) Solid-state NMR structures of integral membrane proteins. Molecular Membrane Biology 32:5-8, pages 156-178.
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Binjuan Ma, Xiaoquan Wei, Shijie Zhou & Mengsheng Yang. (2023) MCTS1 enhances the proliferation of laryngeal squamous cell carcinoma via promoting OTUD6B-1 mediated LIN28B deubiquitination. Biochemical and Biophysical Research Communications 678, pages 128-134.
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Hanbing Jiang, Siying Zhu, Bin Wu, Yinyin Su, Qiming Wang, Yonghua Lei, Qiuju Shao, Yun Gao, Ke Gao & Guojun Wu. (2023) CDK2 and CDK4 targeted liensinine inhibits the growth of bladder cancer T24 cells. Chemico-Biological Interactions 382, pages 110624.
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Kang Kai, Jiang Han-bing, Cheng Bing-lin & Zhang Shu-jun. (2023) Network pharmacology, molecular docking and experimental verification help unravel chelerythrine's potential mechanism in the treatment of gastric cancer. Heliyon 9:7, pages e17393.
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Sujun Li, Jianhui Zhu, David M. Lubman, He Zhou & Haixu Tang. (2023) GlycoSLASH: Concurrent Glycopeptide Identification from Multiple Related LC-MS/MS Data Sets by Using Spectral Clustering and Library Searching. Journal of Proteome Research 22:5, pages 1501-1509.
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Nian-Qiu Liu, Wei-Han Cao, Xing Wang, Junyao Chen & Jianyun Nie. (2022) Cyclin genes as potential novel prognostic biomarkers and therapeutic targets in breast cancer. Oncology Letters 24:4.
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Xinghua Huang, Huaxiang Wang, Fengfeng Xu, Lizhi Lv, Ruling Wang, Bin Jiang, Tingting Liu, Huanzhang Hu & Yi Jiang. (2022) Overexpression of chaperonin containing TCP1 subunit 7 has diagnostic and prognostic value for hepatocellular carcinoma. Aging 14:2, pages 747-769.
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Henu Kumar Verma & LVKS Bhaskar. (2021) SARS-CoV-2 infection in people with pre-existing liver disease: Further research is warranted. World Journal of Gastroenterology 27:45, pages 7855-7858.
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Wenqing Tang, Fangshi Xu, Meng Zhao & Shuqun Zhang. (2021) Ferroptosis regulators, especially SQLE, play an important role in prognosis, progression and immune environment of breast cancer. BMC Cancer 21:1.
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Mingzhu Tan, Jun Meng, Xiaojuan Sun, Xiaowei Fu & Ruihao Wang. (2021) EPS8 supports pancreatic cancer growth by inhibiting BMI1 mediated proteasomal degradation of ALDH7A1. Experimental Cell Research 407:1, pages 112782.
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Fangshi Xu, Zhengliang Zhang, Yidi Zhao, Yang Zhou, Honghong Pei & Ling Bai. (2021) Bioinformatic mining and validation of the effects of ferroptosis regulators on the prognosis and progression of pancreatic adenocarcinoma. Gene 795, pages 145804.
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Rashmi Madda, Chao-Ming Chen, Cheng-Fong Chen, Jir-You Wang, Po-Kuei Wu & Wei-Ming Chen. (2021) Effect of Cryoablation Treatment on the Protein Expression Profile of Low-Grade Central Chondrosarcoma Identified by LC-ESI-MS/MS. Journal of the American Society for Mass Spectrometry 32:6, pages 1469-1489.
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Amandine Girousse, Maxime Mathieu, Quentin Sastourné-Arrey, Sylvie Monferran, Louis Casteilla & Coralie Sengenès. (2021) Endogenous Mobilization of Mesenchymal Stromal Cells: A Pathway for Interorgan Communication?. Frontiers in Cell and Developmental Biology 8.
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Ashley Di Meo, Dorsa Sohaei, Ihor Batruch, Pantelis Alexandrou, Ioannis Prassas & Eleftherios P. Diamandis. (2020) Proteomic Profiling of the Human Tissue and Biological Fluid Proteome. Journal of Proteome Research 20:1, pages 444-452.
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Sara L. Banerjee, Ugo Dionne, Ana I. Osornio-Hernandez & Nicolas Bisson. 2020. Detection Methods in Precision Medicine. Detection Methods in Precision Medicine 191 222 .
Manthan Patel, Divyesh Patel, Subhamoy Datta & Umashankar Singh. (2020) An immunochemistry-based screen for chemical inhibitors of DNA-protein interactions and its application to human CGGBP1. BMC Cancer 20:1.
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Min Li, XiaoYong Pan, Tao Zeng, Yu-Hang Zhang, Kaiyan Feng, Lei Chen, Tao Huang & Yu-Dong Cai. (2020) Alternative Polyadenylation Modification Patterns Reveal Essential Posttranscription Regulatory Mechanisms of Tumorigenesis in Multiple Tumor Types. BioMed Research International 2020, pages 1-9.
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Xiaojie Wang, Qian Yu, Waleed M. Ghareeb, Yiyi Zhang, Xingrong Lu, Ying Huang, Shenghui Huang, Yanwu Sun, Jiayi Lin, Jin Liu & Pan Chi. (2019) Downregulated SPINK4 is associated with poor survival in colorectal cancer. BMC Cancer 19:1.
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Jinhui Liu, Huangyang Meng, Siyue Li, Yujie Shen, Hui Wang, Wu Shan, Jiangnan Qiu, Jie Zhang & Wenjun Cheng. (2019) Identification of Potential Biomarkers in Association With Progression and Prognosis in Epithelial Ovarian Cancer by Integrated Bioinformatics Analysis. Frontiers in Genetics 10.
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Judit Castillo‐Armengol, Lluis Fajas & Isabel C Lopez‐Mejia. (2019) Inter‐organ communication: a gatekeeper for metabolic health. EMBO reports 20:9.
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Li Zhang, Yan Ren, Tao Yang, Guangwei Li, Jianhai Chen, Andrea R. Gschwend, Yeisoo Yu, Guixue Hou, Jin Zi, Ruo Zhou, Bo Wen, Jianwei Zhang, Kapeel Chougule, Muhua Wang, Dario Copetti, Zhiyu Peng, Chengjun Zhang, Yong Zhang, Yidan Ouyang, Rod A. Wing, Siqi Liu & Manyuan Long. (2019) Rapid evolution of protein diversity by de novo origination in Oryza. Nature Ecology & Evolution 3:4, pages 679-690.
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Britt J. van Keulen, Joost Rotteveel & Martijn J. J. Finken. (2019) Unexplained death in patients with NGLY1 mutations may be explained by adrenal insufficiency . Physiological Reports 7:3, pages e13979.
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Susan Smith & James Melrose. (2019) A Retrospective Analysis of the Cartilage Kunitz Protease Inhibitory Proteins Identifies These as Members of the Inter-α-Trypsin Inhibitor Superfamily with Potential Roles in the Protection of the Articulatory Surface. International Journal of Molecular Sciences 20:3, pages 497.
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Zainab Noor, Abidali Mohamedali & Shoba Ranganathan. 2019. Encyclopedia of Bioinformatics and Computational Biology. Encyclopedia of Bioinformatics and Computational Biology 855 870 .
Debajyoti Ghosh, Jonathan A. Bernstein, Gurjit K. Khurana Hershey, Marc E. Rothenberg & Tesfaye B. Mersha. (2018) Leveraging Multilayered “Omics” Data for Atopic Dermatitis: A Road Map to Precision Medicine. Frontiers in Immunology 9.
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Marcus M. Seldin, Simon Koplev, Prashant Rajbhandari, Laurent Vergnes, Gregory M. Rosenberg, Yonghong Meng, Calvin Pan, Thuy M.N. Phuong, Raffi Gharakhanian, Nam Che, Selina Mäkinen, Diana M. Shih, Mete Civelek, Brian W. Parks, Eric D. Kim, Frode Norheim, Karthickeyan Chella Krishnan, Yehudit Hasin-Brumshtein, Margarete Mehrabian, Markku Laakso, Christian A. Drevon, Heikki A. Koistinen, Peter Tontonoz, Karen Reue, Rita M. Cantor, Johan L.M. Björkegren & Aldons J. Lusis. (2018) A Strategy for Discovery of Endocrine Interactions with Application to Whole-Body Metabolism. Cell Metabolism 27:5, pages 1138-1155.e6.
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Jingxia Chen, Hongfen Chen, Hanbing Yang & Huizhen Dai. (2018) SPC25 upregulation increases cancer stem cell properties in non-small cell lung adenocarcinoma cells and independently predicts poor survival. Biomedicine & Pharmacotherapy 100, pages 233-239.
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Pengju Zhao, Xianrui Zheng, Wen Feng, Haifei Wang, Huimin Kang, Chao Ning, Heng Du, Ying Yu, Bugao Li, Yi Zhao & Jian-Feng Liu. (2018) Profiling long noncoding RNA of multi-tissue transcriptome enhances porcine noncoding genome annotation. Epigenomics 10:3, pages 301-320.
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Hu Song, Lingling Liu, Zhaoquan Song, Yongqiang Ren, Chao Li & Jiege Huo. (2018) P4HA3 is Epigenetically Activated by Slug in Gastric Cancer and its Deregulation is Associated With Enhanced Metastasis and Poor Survival . Technology in Cancer Research & Treatment 17, pages 153303381879648.
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Peter J. Thul & Cecilia Lindskog. (2017) The human protein atlas: A spatial map of the human proteome. Protein Science 27:1, pages 233-244.
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Jean Claude Reubi. (2017) In Vitro Evaluation of Molecular Tumor Targets in Nuclear Medicine: Immunohistochemistry Is One Option, but Under Which Conditions?. Journal of Nuclear Medicine 58:12, pages 1885-1887.
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Jifang Cui, Yandi Liu, Heng Zhang, Yijia Wang, Guang Liu, Weihua Zhang & Chunze Zhang. (2017) Low BIN3 Expression is an Independent Predictor of Unfavorable Survival in Patients With Primary Colorectal Cancer . Technology in Cancer Research & Treatment 16:6, pages 1244-1251.
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Anna L. Mallam & Edward M. Marcotte. (2017) Systems-wide Studies Uncover Commander, a Multiprotein Complex Essential to Human Development. Cell Systems 4:5, pages 483-494.
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Trevor Duarte & Charles Spencer. (2016) Personalized Proteomics: The Future of Precision Medicine. Proteomes 4:4, pages 29.
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Cristina Sanfilippo & Michelino Di Rosa. (2016) Modulation of Myotilin and Fylamin C in Various Muscle Diseases: A Microarray Analysis. Journal of Functional Morphology and Kinesiology 1:1, pages 90-101.
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Wai-Kok Choong, Hui-Yin Chang, Ching-Tai Chen, Chia-Feng Tsai, Wen-Lian Hsu, Yu-Ju Chen & Ting-Yi Sung. (2015) Informatics View on the Challenges of Identifying Missing Proteins from Shotgun Proteomics. Journal of Proteome Research 14:12, pages 5396-5407.
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