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Expert Review of Proteomics Volume 3, 2006 - Issue 4
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Review

Embryonic stem cell proteomics

Dennis Van Hoof Postdoc, Netherlands Institute of Developmental Biology, Hubrecht Laboratory, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands. [email protected]
,
Christine L Mummery Professor, University Medical Centre Utrecht, Hubrecht Laboratory and Heart Lung Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands. [email protected]
,
Albert JR Heck Professor, Utrecht University, Department of Biomolecular Mass Spectrometry, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Sorbonnelaan 16, 3584 CA Utrecht, The Netherlands. [email protected]
&
Jeroen Krijgsveld Senior scientist, Utrecht University, Department of Biomolecular Mass Spectrometry, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Sorbonnelaan 16, 3584 CA Utrecht, The Netherlands. [email protected]
Pages 427-437 | Published online: 09 Jan 2014

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Anli Ouyang & Shang-Tian Yang. (2008) A two-stage perfusion fibrous bed bioreactor system for mass production of embryonic stem cells. Expert Opinion on Biological Therapy 8:7, pages 895-909.
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Articles from other publishers (34)

Justin Lo Re, Rezma Shrestha & Leonard Sciorra. 2015. Stem Cells in Regenerative Medicine. Stem Cells in Regenerative Medicine 317 340 .
Albert R. Liberski, Muna N. Al-Noubi, Zahra H. Rahman, Najeeb M. Halabi, Shaima S. Dib, Rasha Al-Mismar, Anja M. Billing, Roopesh Krishnankutty, Faizzan S. Ahmad, Christophe M. Raynaud, Arash Rafii, Kasper Engholm-Keller & Johannes Graumann. (2013) Adaptation of a Commonly Used, Chemically Defined Medium for Human Embryonic Stem Cells to Stable Isotope Labeling with Amino Acids in Cell Culture. Journal of Proteome Research 12:7, pages 3233-3245.
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Nikta Pashai, Haiping Hao, Angelo All, Siddharth Gupta, Raghothama Chaerkady, Alejandro De Los Angeles, John D. Gearhart & Candace L. Kerr. (2012) Genome-Wide Profiling of Pluripotent Cells Reveals a Unique Molecular Signature of Human Embryonic Germ Cells. PLoS ONE 7:6, pages e39088.
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Peter J. Rugg-Gunn, Brian J. Cox, Fredrik Lanner, Parveen Sharma, Vladimir Ignatchenko, Angela C.H. McDonald, Jodi Garner, Anthony O. Gramolini, Janet Rossant & Thomas Kislinger. (2012) Cell-Surface Proteomics Identifies Lineage-Specific Markers of Embryo-Derived Stem Cells. Developmental Cell 22:4, pages 887-901.
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Atara Novak, Michal Amit, Tamar Ziv, Hanna Segev, Bettina Fishman, Arie Admon & Joseph Itskovitz-Eldor. (2011) Proteomics Profiling of Human Embryonic Stem Cells in the Early Differentiation Stage. Stem Cell Reviews and Reports 8:1, pages 137-149.
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Linda Harkness, Tatyana A. Prokhorova, Moustapha Kassem & Blagoy Blagoev. 2012. Human Embryonic Stem Cells Handbook. Human Embryonic Stem Cells Handbook 297 305 .
Dan-yan Zhu, Rong Cui, Ying-ying Zhang, Huan Li, Li-min Zhou & Yi-jia Lou. (2011) Involvement of ubiquitin-proteasome system in icariin-induced cardiomyocyte differentiation of embryonic stem cells using two-dimensional gel electrophoresis. Journal of Cellular Biochemistry 112:11, pages 3343-3353.
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Andrew J.K. Williamson & Anthony D. Whetton. (2011) The requirement for proteomics to unravel stem cell regulatory mechanisms. Journal of Cellular Physiology 226:10, pages 2478-2483.
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Marianna ProkopiManuel Mayr. (2011) Proteomics. Circulation Research 108:4, pages 499-511.
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Chris S. Hughes, Amelia A. Nuhn, Lynne M. Postovit & Gilles A. Lajoie. (2011) Proteomics of human embryonic stem cells. PROTEOMICS 11:4, pages 675-690.
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Linda Harkness, Iben Anne Rasmussen, Karin Erb & Moustapha Kassem. (2010) Derivation and characterisation of hESC lines from supernumerary embryos, experience from Odense, Denmark. In Vitro Cellular & Developmental Biology - Animal 46:3-4, pages 259-268.
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Dennis Van Hoof, Wilma Dormeyer, Stefan R. Braam, Robert Passier, Jantine Monshouwer-Kloots, Dorien Ward-van Oostwaard, Albert J. R. Heck, Jeroen Krijgsveld & Christine L. Mummery. (2010) Identification of Cell Surface Proteins for Antibody-Based Selection of Human Embryonic Stem Cell-Derived Cardiomyocytes. Journal of Proteome Research 9:3, pages 1610-1618.
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Tatyana A. Prokhorova, Kristoffer. T.G Rigbolt, Pia T. Johansen, Jeanette Henningsen, Irina Kratchmarova, Moustapha Kassem & Blagoy Blagoev. (2009) Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) and Quantitative Comparison of the Membrane Proteomes of Self-renewing and Differentiating Human Embryonic Stem Cells. Molecular & Cellular Proteomics 8:5, pages 959-970.
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Yan Li, Xiaonan Kang, Kun Guo, Xuefei Li, Dongmei Gao, Jiefeng Cui, Lu Sun, Pengyuan Yang & Yinkun Liu. (2009) Proteome alteration of early‐stage differentiation of mouse embryonic stem cells into hepatocyte‐like cells. ELECTROPHORESIS 30:9, pages 1431-1440.
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Nicolas Bousette, Thomas Kislinger, Vincent Fong, Ruth Isserlin, Johannes A. Hewel, Andrew Emili & Anthony O. Gramolini. (2009) Large-Scale Characterization and Analysis of the Murine Cardiac Proteome. Journal of Proteome Research 8:4, pages 1887-1901.
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Amritha Jaishankar & Kent E. Vrana. (2009) Emerging molecular approaches in stem cell biology. BioTechniques 46:5, pages 367-371.
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Raghothama Chaerkady, Candace L. Kerr, Arivusudar Marimuthu, Dhanashree S. Kelkar, Manoj Kumar Kashyap, Marjan Gucek, John D. Gearhart & Akhilesh Pandey. (2009) Temporal Analysis of Neural Differentiation Using Quantitative Proteomics. Journal of Proteome Research 8:3, pages 1315-1326.
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Sean C. Bendall, Chris Hughes, J. Larry Campbell, Morag H. Stewart, Paula Pittock, Suya Liu, Eric Bonneil, Pierre Thibault, Mickie Bhatia & Gilles A. Lajoie. (2009) An Enhanced Mass Spectrometry Approach Reveals Human Embryonic Stem Cell Growth Factors in Culture. Molecular & Cellular Proteomics 8:3, pages 421-432.
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Julia GorelikNadire N. AliSiti H. Sheikh Abdul KadirMax LabPetra StojkovicLyle ArmstrongElena V. SviderskayaYuri A. NegulyaevDavid KlenermanDorothy C. BennettMajlinda LakoSian E. HardingMiodrag StojkovicYuri E. Korchev. (2008) Non-invasive Imaging of Stem Cells by Scanning Ion Conductance Microscopy: Future Perspective. Tissue Engineering Part C: Methods 14:4, pages 311-318.
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Wilma Dormeyer, Dennis van Hoof, Christine L. Mummery, Jeroen Krijgsveld & Albert J. R. Heck. (2008) A practical guide for the identification of membrane and plasma membrane proteins in human embryonic stem cells and human embryonal carcinoma cells. PROTEOMICS 8:19, pages 4036-4053.
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Dennis Van Hoof, Albert J.R. Heck, Jeroen Krijgsveld & Christine L. Mummery. (2008) Proteomics and human embryonic stem cells. Stem Cell Research 1:3, pages 169-182.
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Wilma Dormeyer, Dennis van Hoof, Stefan R. Braam, Albert J. R. Heck, Christine L. Mummery & Jeroen Krijgsveld. (2008) Plasma Membrane Proteomics of Human Embryonic Stem Cells and Human Embryonal Carcinoma Cells. Journal of Proteome Research 7:7, pages 2936-2951.
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Rebekah L. Gundry, Kenneth R. Boheler, Jennifer E. Van Eyk & Bernd Wollscheid. (2008) A novel role for proteomics in the discovery of cell‐surface markers on stem cells: Scratching the surface. PROTEOMICS – Clinical Applications 2:6, pages 892-903.
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Nicolas Buhr, Christine Carapito, Christine Schaeffer, Emmanuelle Kieffer, Alain Van Dorsselaer & Stéphane Viville. (2008) Nuclear proteome analysis of undifferentiated mouse embryonic stem and germ cells. ELECTROPHORESIS 29:11, pages 2381-2390.
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Anastasia K. Yocum, Theresa E. Gratsch, Nancy Leff, John R. Strahler, Christie L. Hunter, Angela K. Walker, George Michailidis, Gilbert S. Omenn, K. Sue O'Shea & Philip C. Andrews. (2008) Coupled Global and Targeted Proteomics of Human Embryonic Stem Cells during Induced Differentiation. Molecular & Cellular Proteomics 7:4, pages 750-767.
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Gerd Schmitz, Carsten Gnewuch, Regina Ebert, Gabriele Möller, Jerzy Adamski & Franz Jakob. 2008. Proteomics Sample Preparation. Proteomics Sample Preparation 379 422 .
Thomas C Schulz, Anna Maria Swistowska, Ying Liu, Andrzej Swistowski, Gail Palmarini, Sandii N Brimble, Eric Sherrer, Allan J Robins, Mahendra S Rao & Xianmin Zeng. (2007) A large-scale proteomic analysis of human embryonic stem cells. BMC Genomics 8:1.
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Jianxue Li, Zheng Cui, Sheyun Zhao & Richard L. Sidman. (2007) Unique Glycerophospholipid Signature in Retinal Stem Cells Correlates with Enzymatic Functions of Diverse Long-Chain Acyl-CoA Synthetases. Stem Cells 25:11, pages 2864-2873.
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Anissa Sidibe, Xiaoke Yin, Edward Tarelli, Qingzhong Xiao, Anna Zampetaki, Qingbo Xu & Manuel Mayr. (2007) Integrated Membrane Protein Analysis of Mature and Embryonic Stem Cell-derived Smooth Muscle Cells Using a Novel Combination of CyDye/Biotin Labeling. Molecular & Cellular Proteomics 6:10, pages 1788-1797.
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Dennis Van Hoof, Martijn W H Pinkse, Dorien Ward-Van Oostwaard, Christine L Mummery, Albert J R Heck & Jeroen Krijgsveld. (2007) An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics. Nature Methods 4:9, pages 677-678.
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Hossein Baharvand, Ali Fathi, Dennis van Hoof & Ghasem Hosseini Salekdeh. (2007) Concise Review: Trends in Stem Cell Proteomics. Stem Cells 25:8, pages 1888-1903.
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Lawrence W Stanton & Manjiri M Bakre. (2007) Genomic and proteomic characterization of embryonic stem cells. Current Opinion in Chemical Biology 11:4, pages 399-404.
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Hye Won Park, Jun‐Seop Shin & Chan‐Wha Kim. (2007) Proteome of mesenchymal stem cells. PROTEOMICS 7:16, pages 2881-2894.
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Li Ma, Bingyun Sun, Leroy Hood & Qiang Tian. (2007) Molecular profiling of stem cells. Clinica Chimica Acta 378:1-2, pages 24-32.
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