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Expert Review of Proteomics Volume 5, 2008 - Issue 1
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Review

Chromatin proteomics and epigenetic regulatory circuits

Clemens Bönisch Adolf-Butenandt-Institute & Center for Integrated Protein Science Munich (CIPSM), Department of Molecular Biology, Ludwig-Maximilians University, Schillerstr. 44, 80336 Munich, Germany. [email protected]
,
Sonja M Nieratschker Adolf-Butenandt-Institute & Center for Integrated Protein Science Munich (CIPSM), Department of Molecular Biology, Ludwig-Maximilians University, Schillerstr. 44, 80336 Munich, Germany. [email protected]
,
Nikos K Orfanos Adolf-Butenandt-Institute & Center for Integrated Protein Science Munich (CIPSM), Department of Molecular Biology, Ludwig-Maximilians University, Schillerstr. 44, 80336 Munich, Germany. [email protected]
&
Sandra B Hake Adolf-Butenandt-Institute & Center for Integrated Protein Science Munich (CIPSM), Department of Molecular Biology, Ludwig-Maximilians University, Schillerstr. 44, 80336 Munich, Germany. [email protected]
Pages 105-119 | Published online: 09 Jan 2014

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Masaru Katoh. (2015) Functional proteomics of the epigenetic regulators ASXL1, ASXL2 and ASXL3: a convergence of proteomics and epigenetics for translational medicine. Expert Review of Proteomics 12:3, pages 317-328.
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Nicolas L Young, Mariana D Plazas-Mayorca & Benjamin A Garcia. (2010) Systems-wide proteomic characterization of combinatorial post-translational modification patterns. Expert Review of Proteomics 7:1, pages 79-92.
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Lisa-Maria Zink & Sandra B Hake. (2016) Histone variants: nuclear function and disease. Current Opinion in Genetics & Development 37, pages 82-89.
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Hong Long, Chunli Chen, Bing Wang & Yanni Feng. (2015) rDNA Genetic Imbalance and Nucleolar Chromatin Restructuring Is Induced by Distant Hybridization between Raphanus sativus and Brassica alboglabra. PLOS ONE 10:2, pages e0117198.
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Anastasia Spyropoulou, Christina Piperi, Christos Adamopoulos & Athanasios G. Papavassiliou. (2012) Deregulated Chromatin Remodeling in the Pathobiology of Brain Tumors. NeuroMolecular Medicine 15:1, pages 1-24.
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Robert W Veltri, Christhunesa S Christudass & Sumit Isharwal. (2012) Nuclear morphometry, nucleomics and prostate cancer progression. Asian Journal of Andrology 14:3, pages 375-384.
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Elisabeth Hersman, Dwella M. Nelson, Wendell P. Griffith, Christine Jelinek & Robert J. Cotter. (2012) Analysis of histone modifications from tryptic peptides of deuteroacetylated isoforms. International Journal of Mass Spectrometry 312, pages 5-16.
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Seung Ju BackMyung ImKyung Cheol SohnDae Kyoung ChoiGe ShiNam Ji JeongYoung LeeYoung Joon SeoChang Deok KimJeung Hoon Lee. (2012) Epigenetic Modulation of Gene Expression during Keratinocyte Differentiation. Annals of Dermatology 24:3, pages 261.
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M Chioda & P B Becker. (2010) Soft skills turned into hard facts: nucleosome remodelling at developmental switches. Heredity 105:1, pages 71-79.
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Purnima Bhargava. (2010) Epigenetics to proteomics: From yeast to brain. PROTEOMICS 10:4, pages 749-770.
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Mariana D. Plazas-Mayorca, Joshua S. Bloom, Ulrike Zeissler, Gary Leroy, Nicolas L. Young, Peter A. DiMaggio, Leonid Krugylak, Robert Schneider & Benjamin A. Garcia. (2010) Quantitative proteomics reveals direct and indirect alterations in the histone code following methyltransferase knockdown. Molecular BioSystems 6:9, pages 1719.
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L. Recio & M.J. Cunningham. 2010. Comprehensive Toxicology. Comprehensive Toxicology 389 410 .
Nicolas L. Young, Peter A. DiMaggio, Mariana D. Plazas-Mayorca, Richard C. Baliban, Christodoulos A. Floudas & Benjamin A. Garcia. (2009) High Throughput Characterization of Combinatorial Histone Codes. Molecular & Cellular Proteomics 8:10, pages 2266-2284.
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Hugh J. French, Rosalind Attenborough, Kristine Hardy, M. Frances Shannon & Rohan B. H. Williams. (2009) Interindividual variation in epigenomic phenomena in humans. Mammalian Genome 20:9-10.
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Zheying Zhu, Robert J. Edwards & Alan R. Boobis. (2009) Increased Expression of Histone Proteins during Estrogen-Mediated Cell Proliferation. Environmental Health Perspectives 117:6, pages 928-934.
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Stephen M. Fuchs, R. Nicholas Laribee & Brian D. Strahl. (2009) Protein modifications in transcription elongation. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1789:1, pages 26-36.
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George WM Millington. (2008) Epigenetics and dermatological disease. Pharmacogenomics 9:12, pages 1835-1850.
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