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SPECIAL FOCUS: 10-year anniversary issue - Review

Autoimmune disease in the epigenetic era: how has epigenetics changed our understanding of disease and how can we expect the field to evolve?

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Juan Esteban Garcia-Robledo, María Claudia Barrera & Gabriel J. Tobón. (2020) CRISPR/Cas: from adaptive immune system in prokaryotes to therapeutic weapon against immune-related diseases. International Reviews of Immunology 39:1, pages 11-20.
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Thomas G Forsthuber & Timothy RDJ Radstake. (2015) Expert Review of Clinical Immunology 10-year anniversary issue. Expert Review of Clinical Immunology 11:1, pages 1-3.
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Jingjing Fan. (2023) Investigation of DNA methylation in autoimmune diseases with genome-wide association analysis. Investigation of DNA methylation in autoimmune diseases with genome-wide association analysis.
Wenjing Zhang, Guixin Liang, Huifeng Zhou, Xuedan Zeng, Zhiwen Zhang, Xia Xu & Kuan Lai. (2023) Identification of potential biomarkers for systemic lupus erythematosus by integrated analysis of gene expression and methylation data. Clinical Rheumatology 42:5, pages 1423-1433.
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Albert J. Czaja. (2022) Epigenetic Aspects and Prospects in Autoimmune Hepatitis. Frontiers in Immunology 13.
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Felix J. Hartmann & Sean C. Bendall. (2019) Immune monitoring using mass cytometry and related high-dimensional imaging approaches. Nature Reviews Rheumatology 16:2, pages 87-99.
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Albert J Czaja. (2019) Examining pathogenic concepts of autoimmune hepatitis for cues to future investigations and interventions. World Journal of Gastroenterology 25:45, pages 6579-6606.
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Malav S. TrivediMaria M. AbreuLeonor SarriaNatasha RoseNida AhmedVladimir BeljanskiMary A. FletcherNancy G. KlimasLubov Nathanson. (2019) Alterations in DNA Methylation Status Associated with Gulf War Illness. DNA and Cell Biology 38:6, pages 561-571.
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Matlock A. Jeffries. (2018) Epigenetic editing: How cutting-edge targeted epigenetic modification might provide novel avenues for autoimmune disease therapy. Clinical Immunology 196, pages 49-58.
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Albert J. Czaja. (2018) Under-Evaluated or Unassessed Pathogenic Pathways in Autoimmune Hepatitis and Implications for Future Management. Digestive Diseases and Sciences 63:7, pages 1706-1725.
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Denisse Sepúlveda, María-José Barrera, Isabel Castro, Sergio Aguilera, Patricia Carvajal, Carolina Lagos, Sergio González, Nicolás Albornoz, Verónica Bahamondes, Andrew F G Quest, Ulises Urzúa, Claudio Molina, Cecilia Leyton, Marcela A Hermoso & María-Julieta González. (2018) Impaired IRE1α/XBP-1 pathway associated to DNA methylation might contribute to salivary gland dysfunction in Sjögren’s syndrome patients. Rheumatology 57:6, pages 1021-1032.
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Albert J. Czaja. (2018) Epigenetic changes and their implications in autoimmune hepatitis. European Journal of Clinical Investigation 48:4, pages e12899.
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A. J. Czaja. (2017) Review article: next‐generation transformative advances in the pathogenesis and management of autoimmune hepatitis. Alimentary Pharmacology & Therapeutics 46:10, pages 920-937.
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Ali Husain & Matlock A. Jeffries. (2017) Epigenetics and Bone Remodeling. Current Osteoporosis Reports 15:5, pages 450-458.
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Peng Zhang, Hui Wang, Jianming Wang, Qingzuo Liu, Yongqiang Wang, Fan Feng & Lei Shi. (2017) Association between protocadherin 8 promoter hypermethylation and the pathological status of prostate cancer. Oncology Letters 14:2, pages 1657-1664.
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Maria Teruel & Amr H. Sawalha. (2017) Epigenetic Variability in Systemic Lupus Erythematosus: What We Learned from Genome-Wide DNA Methylation Studies. Current Rheumatology Reports 19:6.
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Bin Wang, Xiaoqing Shao, Ronghua Song, Donghua Xu & Jin-an Zhang. (2017) The Emerging Role of Epigenetics in Autoimmune Thyroid Diseases. Frontiers in Immunology 8.
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Mikhail G Dozmorov, Patrick Coit, Kathleen Maksimowicz-McKinnon & Amr H Sawalha. (2017) Age-associated DNA methylation changes in naive CD4 + T cells suggest an evolving autoimmune epigenotype in aging T cells . Epigenomics 9:4, pages 429-445.
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Zdeněk Kejík, Robert Kaplánek, Martin Havlík, Tomáš Bříza, Milan Jakubek, Jarmila Králová, Ivan Mikula, Pavel Martásek & Vladimír Král. (2017) Optical probes and sensors as perspective tools in epigenetics. Bioorganic & Medicinal Chemistry 25:8, pages 2295-2306.
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Susan Yung & Tak Mao Chan. (2016) Molecular and Immunological Basis of Tubulo-Interstitial Injury in Lupus Nephritis: a Comprehensive Review. Clinical Reviews in Allergy & Immunology 52:2, pages 149-163.
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William Rae. (2016) Indications to Epigenetic Dysfunction in the Pathogenesis of Common Variable Immunodeficiency. Archivum Immunologiae et Therapiae Experimentalis 65:2, pages 101-110.
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Patrick Coit, Mikhail G. Dozmorov, Joan T. Merrill, W. Joseph McCune, Kathleen Maksimowicz-McKinnon, Jonathan D. Wren & Amr H. Sawalha. (2016) Epigenetic Reprogramming in Naive CD4+ T Cells Favoring T Cell Activation and Non-Th1 Effector T Cell Immune Response as an Early Event in Lupus Flares. Arthritis & Rheumatology 68:9, pages 2200-2209.
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Haijing Wu, Ming Zhao, Akihiko Yoshimura, Christopher Chang & Qianjin Lu. (2016) Critical Link Between Epigenetics and Transcription Factors in the Induction of Autoimmunity: a Comprehensive Review. Clinical Reviews in Allergy & Immunology 50:3, pages 333-344.
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Juan-Manuel Anaya, Carolina Ramirez-Santana, Maria A. Alzate, Nicolas Molano-Gonzalez & Adriana Rojas-Villarraga. (2016) The Autoimmune Ecology. Frontiers in Immunology 7.
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Jessie Nicodemus-Johnson, Katherine A. Naughton, Jyotsna Sudi, Kyle Hogarth, Edward T. Naurekas, Dan L. Nicolae, Anne I. Sperling, Julian Solway, Steven R. White & Carole Ober. (2016) Genome-Wide Methylation Study Identifies an IL-13–induced Epigenetic Signature in Asthmatic Airways. American Journal of Respiratory and Critical Care Medicine 193:4, pages 376-385.
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