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Marie Locard-Paulet, Olivier Pible, Anne Gonzalez de Peredo, Béatrice Alpha-Bazin, Christine Almunia, Odile Burlet-Schiltz & Jean Armengaud. (2016) Clinical implications of recent advances in proteogenomics. Expert Review of Proteomics 13:2, pages 185-199.
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Jean Armengaud, Joseph A Christie-Oleza, Gérémy Clair, Véronique Malard & Catherine Duport. (2012) Exoproteomics: exploring the world around biological systems. Expert Review of Proteomics 9:5, pages 561-575.
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Articles from other publishers (41)
Anurag Raj, Suruchi Aggarwal, Dhirendra Kumar, Amit Kumar Yadav & Debasis Dash. (2023) Proteogenomics 101: a primer on database search strategies. Journal of Proteins and Proteomics.
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África Sanchiz, Esperanza Morato, Alberto Rastrojo, Esther Camacho, Sandra González-de la Fuente, Anabel Marina, Begoña Aguado & Jose M. Requena. (2020) The Experimental Proteome of Leishmania infantum Promastigote and Its Usefulness for Improving Gene Annotations. Genes 11:9, pages 1036.
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Sahil Mehta, Donald James & M. K. Reddy. 2019. Recent Approaches in Omics for Plant Resilience to Climate Change. Recent Approaches in Omics for Plant Resilience to Climate Change
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Alfonso Carleo, David Bennett & Paola Rottoli. (2016) Biomarkers in sarcoidosis. Current Opinion in Pulmonary Medicine 22:5, pages 509-514.
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Dhirendra Kumar, Anupam Kumar Mondal, Rintu Kutum & Debasis Dash. (2016) Proteogenomics of rare taxonomic phyla: A prospective treasure trove of protein coding genes. PROTEOMICS 16:2, pages 226-240.
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Cuauhtemoc Licona-Cassani, Pablo Cruz-Morales, Angel Manteca, Francisco Barona-Gomez, Lars K. Nielsen & Esteban Marcellin. (2015) Systems Biology Approaches to Understand Natural Products Biosynthesis. Frontiers in Bioengineering and Biotechnology 3.
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Joseph A. Christie-Oleza & Jean Armengaud. (2015)
Proteomics of the
Roseobacter
clade, a window to the marine microbiology landscape
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Hélène Omer, Béatrice Alpha-Bazin, Jean-Luc Brunet, Jean Armengaud & Catherine Duport. (2015) Proteomics identifies Bacillus cereus EntD as a pivotal protein for the production of numerous virulence factors. Frontiers in Microbiology 6.
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Ming-kun Yang, Yao-hua Yang, Zhuo Chen, Jia Zhang, Yan Lin, Yan Wang, Qian Xiong, Tao Li, Feng Ge, Donald A. Bryant & Jin-dong Zhao. (2014) Proteogenomic analysis and global discovery of posttranslational modifications in prokaryotes. Proceedings of the National Academy of Sciences 111:52.
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Emily S Boja & Henry Rodriguez. (2014) Proteogenomic convergence for understanding cancer pathways and networks. Clinical Proteomics 11:1.
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Jean Armengaud, Judith Trapp, Olivier Pible, Olivier Geffard, Arnaud Chaumot & Erica M. Hartmann. (2014) Non-model organisms, a species endangered by proteogenomics. Journal of Proteomics 105, pages 5-18.
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Céline Bland, Erica M. Hartmann, Joseph A. Christie-Oleza, Bernard Fernandez & Jean Armengaud. (2014) N-Terminal-oriented Proteogenomics of the Marine Bacterium Roseobacter Denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) Labeling and Diagonal Chromatography. Molecular & Cellular Proteomics 13:5, pages 1369-1381.
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Carolina Rubiano-Labrador, Céline Bland, Guylaine Miotello, Philippe Guérin, Olivier Pible, Sandra Baena & Jean Armengaud. (2014) Proteogenomic insights into salt tolerance by a halotolerant alpha-proteobacterium isolated from an Andean saline spring. Journal of Proteomics 97, pages 36-47.
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Erica M. Hartmann & Jean Armengaud. 2014. Detection of Chemical, Biological, Radiological and Nuclear Agents for the Prevention of Terrorism. Detection of Chemical, Biological, Radiological and Nuclear Agents for the Prevention of Terrorism
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Debmalya BarhSomnath Roy, PhD Banerjee, PhD Bhattacharya, PhD Pattanayak & Kailash Bansal. 2013. OMICS Applications in Crop Science. OMICS Applications in Crop Science
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Karsten Krug, Alejandro Carpy, Gesa Behrends, Katarina Matic, Nelson C. Soares & Boris Macek. (2013) Deep Coverage of the Escherichia coli Proteome Enables the Assessment of False Discovery Rates in Simple Proteogenomic Experiments. Molecular & Cellular Proteomics 12:11, pages 3420-3430.
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Ganesh Kumar Agrawal, Abhijit Sarkar, Pier Giorgio Righetti, Romina Pedreschi, Sebastien Carpentier, Tai Wang, Bronwyn J. Barkla, Ajay Kohli, Bongani Kaiser Ndimba, Natalia V. Bykova, Christof Rampitsch, Lello Zolla, Mohamed Suhail Rafudeen, Rainer Cramer, Laurence Veronique Bindschedler, Nikolaos Tsakirpaloglou, Roya Janeen Ndimba, Jill M. Farrant, Jenny Renaut, Dominique Job, Shoshi Kikuchi & Randeep Rakwal. (2013) A decade of plant proteomics and mass spectrometry: Translation of technical advancements to food security and safety issues. Mass Spectrometry Reviews 32:5, pages 335-365.
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Alain Dedieu, Elodie Sahinovic, Philippe Guérin, Laurence Blanchard, Sylvain Fochesato, Bruno Meunier, Arjan de Groot & Jean Armengaud. (2013) Major soluble proteome changes in Deinococcus deserti over the earliest stages following gamma-ray irradiation. Proteome Science 11:1, pages 3.
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Esteban Marcellin, Cuauhtemoc Licona-Cassani, Tim R Mercer, Robin W Palfreyman & Lars K Nielsen. (2013) Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approach. BMC Genomics 14:1, pages 699.
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Joseph Alexander Christie-Oleza, Juana Maria Piña-Villalonga, Philippe Guerin, Guylaine Miotello, Rafael Bosch, Balbina Nogales & Jean Armengaud. (2013)
Shotgun nanoLC-MS/MS proteogenomics to document MALDI-TOF biomarkers for screening new members of the
Ruegeria
genus
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Jean Armengaud. (2013) Microbiology and proteomics, getting the best of both worlds!. Environmental Microbiology 15:1, pages 12-23.
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Joseph A Christie-Oleza, Guylaine Miotello & Jean Armengaud. (2012) High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade. BMC Genomics 13:1.
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Elena S Peterson, Lee Ann McCue, Alexandra C Schrimpe-Rutledge, Jeffrey L Jensen, Hyunjoo Walker, Markus A Kobold, Samantha R Webb, Samuel H Payne, Charles Ansong, Joshua N Adkins, William R Cannon & Bobbie-Jo M Webb-Robertson. (2012) VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data. BMC Genomics 13:1.
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Ganesh Kumar Agrawal, Romina Pedreschi, Bronwyn J. Barkla, Laurence Veronique Bindschedler, Rainer Cramer, Abhijit Sarkar, Jenny Renaut, Dominique Job & Randeep Rakwal. (2012) Translational plant proteomics: A perspective. Journal of Proteomics 75:15, pages 4588-4601.
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Gérémy Clair, Jean Armengaud & Catherine Duport. (2012) Restricting Fermentative Potential by Proteome Remodeling. Molecular & Cellular Proteomics 11:6, pages M111.013102.
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Jay J. ThelenJán A. Miernyk. (2012) The proteomic future: where mass spectrometry should be taking us. Biochemical Journal 444:2, pages 169-181.
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Magali Toueille, Boris Mirabella, Philippe Guérin, Claire Bouthier de la Tour, Stéphanie Boisnard, Hong Ha Nguyen, Laurence Blanchard, Pascale Servant, Arjan de Groot, Suzanne Sommer & Jean Armengaud. (2012) A comparative proteomic approach to better define Deinococcus nucleoid specificities. Journal of Proteomics 75:9, pages 2588-2600.
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Joseph Alexander Christie-Oleza, Juana Maria Piña-Villalonga, Rafael Bosch, Balbina Nogales & Jean Armengaud. (2012) Comparative Proteogenomics of Twelve Roseobacter Exoproteomes Reveals Different Adaptive Strategies Among These Marine Bacteria. Molecular & Cellular Proteomics 11:2, pages M111.013110.
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Tzu-Chiao Chao & Nicole Hansmeier. (2012) The current state of microbial proteomics: Where we are and where we want to go. PROTEOMICS 12:4-5, pages 638-650.
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Mohamed Helmy, Masaru Tomita & Yasushi Ishihama. (2011) OryzaPG-DB: Rice Proteome Database based on Shotgun Proteogenomics. BMC Plant Biology 11:1.
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Laurence V. Bindschedler, Liam J. McGuffin, Timothy A. Burgis, Pietro D. Spanu & Rainer Cramer. (2011) Proteogenomics and in silico structural and functional annotation of the barley powdery mildew Blumeria graminis f. sp. hordei. Methods 54:4, pages 432-441.
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Alexander Archakov, Alexander Aseev, Victor Bykov, Anatoly Grigoriev, Vadim Govorun, Vadim Ivanov, Alexander Khlunov, Andrey Lisitsa, Sergey Mazurenko, Alexander A. Makarov, Elena Ponomarenko, Renad Sagdeev & Konstantin Skryabin. (2011) Gene‐centric view on the human proteome project: The example of the Russian roadmap for chromosome 18. PROTEOMICS 11:10, pages 1853-1856.
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Alain Dedieu, Jean-Charles Gaillard, Thierry Pourcher, Elisabeth Darrouzet & Jean Armengaud. (2011) Revisiting Iodination Sites in Thyroglobulin with an Organ-oriented Shotgun Strategy. Journal of Biological Chemistry 286:1, pages 259-269.
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Katarína Klubicová, Maksym Danchenko, Ludovit Skultety, Ján A. Miernyk, Namik M. Rashydov, Valentyna V. Berezhna, Anna Pret’ová & Martin Hajduch. (2010) Proteomics Analysis of Flax Grown in Chernobyl Area Suggests Limited Effect of Contaminated Environment on Seed Proteome. Environmental Science & Technology 44:18, pages 6940-6946.
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Joseph Alexander Christie-Oleza & Jean Armengaud. (2010) In-Depth Analysis of Exoproteomes from Marine Bacteria by Shotgun Liquid Chromatography-Tandem Mass Spectrometry: the Ruegeria pomeroyi DSS-3 Case-Study. Marine Drugs 8:8, pages 2223-2239.
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