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Original Article

Applicability of semi-automatic segmentation for volumetric analysis of brain lesions

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Pages 173-178 | Published online: 09 Jul 2009

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H. Ainiala, P. Dastidar, J. Loukkola, T. Lehtimäki, M. Korpela, J. Peltola & A. Hietaharju. (2005) Cerebral MRI abnormalities and their association with neuropsychiatric manifestations in SLE: a population‐based study. Scandinavian Journal of Rheumatology 34:5, pages 376-382.
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Julia Vistbakka, Marja-Liisa Sumelahti, Terho Lehtimäki & Sanna Hagman. (2022) Temporal variability of serum miR-191, miR-223, miR-128, and miR-24 in multiple sclerosis: A 4-year follow-up study. Journal of the Neurological Sciences 442, pages 120395.
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Marcin Kolasa, Ullamari Hakulinen, Antti Brander, Sanna Hagman, Prasun Dastidar, Irina Elovaara & Marja-Liisa Sumelahti. (2019) Diffusion tensor imaging and disability progression in multiple sclerosis: A 4-year follow-up study. Brain and Behavior 9:1, pages e01194.
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Richa Agarwal, Oliver Diaz, Xavier Lladó, Albert Gubern-Mérida, Joan C. Vilanova & Robert Martí. (2017) Lesion Segmentation in Automated 3D Breast Ultrasound: Volumetric Analysis. Ultrasonic Imaging 40:2, pages 97-112.
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Xiong Jian-ping, Zhang Ai-li, Ji Kai-fan, Feng Song, Deng Hui & Yang Yun-fei. (2016) Identifying and Tracking Solar Photospheric Bright Points Based on Three-dimensional Segmentation Technology. Chinese Astronomy and Astrophysics 40:4, pages 540-554.
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Marcin Kolasa, Ullamari Hakulinen, Mika Helminen, Sanna Hagman, Minna Raunio, Maija Rossi, Antti Brander, Prasun Dastidar & Irina Elovaara. (2015) Longitudinal assessment of clinically isolated syndrome with diffusion tensor imaging and volumetric MRI. Clinical Imaging 39:2, pages 207-212.
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Renuka Natarajan, Sanna Hagman, Mari Hämälainen, Tiina Leppänen, Prasun Dastidar, Eeva Moilanen & Irina Elovaara. (2015) Adipsin Is Associated with Multiple Sclerosis: A Follow-Up Study of Adipokines. Multiple Sclerosis International 2015, pages 1-9.
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Florentino Luciano Caetano dos Santos, Atte Joutsen, Mitsugu Terada, Juha Salenius & Hannu Eskola. (2014) A Semi-Automatic Segmentation Method for the Structural Analysis of Carotid Atherosclerotic Plaques by Computed Tomography Angiography. Journal of Atherosclerosis and Thrombosis 21:9, pages 930-940.
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Xiao Li Liu, Yu Ting Guo, Jun Kong & Jian Zhong Wang. (2013) A Modified Fuzzy C-Means Algorithm Brain MR Images Segmentation with Bias Field Compensation. Advanced Materials Research 756-759, pages 1349-1355.
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J. Ghasemi, R. Ghaderi, M.R. Karami Mollaei & S.A. Hojjatoleslami. (2013) A novel fuzzy Dempster–Shafer inference system for brain MRI segmentation. Information Sciences 223, pages 205-220.
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Maija Rossi, Minna Raunio, Pertti Ryymin, Irina Elovaara & Prasun Dastidar. (2013) Lesion contrast differences in MRI sequences in multiple sclerosis: Correlation to clinical disability. Journal of Biomedical Science and Engineering 06:03, pages 319-326.
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Jamal Ghasemi, Mohammad Reza Karami Mollaei, Reza Ghaderi & Ali Hojjatoleslami. (2012) Brain tissue segmentation based on spatial information fusion by Dempster-Shafer theory. Journal of Zhejiang University SCIENCE C 13:7, pages 520-533.
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Xingchen Wu, Prasun Dastidar, Hannu Pertovaara, Pasi Korkola, Ritva Järvenpää, Maija Rossi, Tiit Kööbi, Hannu Eskola & Pirkko-Liisa Kellokumpu-Lehtinen. (2010) Early Treatment Response Evaluation in Patients with Diffuse Large B-Cell Lymphoma—A Pilot Study Comparing Volumetric MRI and PET/CT. Molecular Imaging and Biology 13:4, pages 785-792.
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Sanna Hagman, Minna Raunio, Maija Rossi, Prasun Dastidar & Irina Elovaara. (2011) Disease-associated inflammatory biomarker profiles in blood in different subtypes of multiple sclerosis: Prospective clinical and MRI follow-up study. Journal of Neuroimmunology 234:1-2, pages 141-147.
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Irina Elovaara, Hanna Kuusisto, Xingchen Wu, Sanna Rinta, Prasun Dastidar & Birgit Reipert. (2011) Intravenous Immunoglobulins Are a Therapeutic Option in the Treatment of Multiple Sclerosis Relapse. Clinical Neuropharmacology 34:2, pages 84-89.
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Maija E Rossi, Eeva Jason, Silvia Marchesotti, Prasun Dastidar, Jyrki Ollikainen & Seppo Soimakallio. (2010) Diffusion tensor imaging correlates with lesion volume in cerebral hemisphere infarctions. BMC Medical Imaging 10:1.
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M Ukkonen, T Vahvelainen, P Hämäläinen, P Dastidar & I Elovaara. (2009) Cognitive dysfunction in primary progressive multiple sclerosis: a neuropsychological and MRI study. Multiple Sclerosis Journal 15:9, pages 1055-1061.
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Maija Rossi, Hannu Pertovaara, Prasun Dastidar, Ritva Järvenpää, Tiina Luukkaala, Sylvia Rautakunnas, Tomi Heinonen, Hannu Eskola, Seppo Soimakallio & Pirkko-Liisa Kellokumpu-Lehtinen. (2009) Computed Tomography-Based Tumor Volume in Non-Hodgkin Lymphoma. Journal of Computer Assisted Tomography 33:4, pages 641-649.
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Maija Rossi, Prasun Dastidar, Hannu Pertovaara, Ritva Järvenpää, Tiina Luukkaala, Pirkko-Liisa Kellokumpu-Lehtinen, Sylvia Rautakunnas, Tomi Heinonen, Seppo Soimakallio & Hannu Eskola. (2009) Response Analysis of Non-Hodgkin Lymphoma Using Magnetic Resonance Imaging-Based Volumes. Journal of Computer Assisted Tomography 33:3, pages 466-474.
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Nadine Pigard, Irina Elovaara, Hanna Kuusisto, Raija Paalavuo, Prasun Dastidar, Klaus Zimmermann, Hans-Peter Schwarz & Birgit Reipert. (2009) Therapeutic activities of intravenous immunoglobulins in multiple sclerosis involve modulation of chemokine expression. Journal of Neuroimmunology 209:1-2, pages 114-120.
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Jianzhong Wang, Jun Kong, Yinghua Lu, Miao Qi & Baoxue Zhang. (2008) A modified FCM algorithm for MRI brain image segmentation using both local and non-local spatial constraints. Computerized Medical Imaging and Graphics 32:8, pages 685-698.
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Jianzhong Wang, Di Liu, Lili Dou, Baoxue Zhang, Jun Kong & Yinghua Lu. (2008) Graph theory based algorithm for magnetic resonance brain images segmentation. Graph theory based algorithm for magnetic resonance brain images segmentation.
Maritta UkkonenXingchen Wu, Birgit Reipert, Prasun Dastidar & Irina Elovaara. (2007) Cell surface adhesion molecules and cytokine profiles in primary progressive multiple sclerosis. Multiple Sclerosis Journal 13:6, pages 701-707.
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X. Wu, H. Kuusisto, P. Dastidar, H. Huhtala, S. T. Nikkari, M. Ukkonen, M. Höyhtyä & I. Elovaara. (2007) Once-weekly 22?g subcutaneous IFN-?-1a in secondary progressive MS: a 3-year follow-up study on brain MRI measurements and serum MMP-9 levels. Acta Neurologica Scandinavica 116:1, pages 43-48.
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H. J. Frey, K. M. Mattila, M. A. Korolainen & T. Pirttilä. (2005) Problems Associated with Biological Markers of Alzheimer’s Disease. Neurochemical Research 30:12, pages 1501-1510.
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X. Wu, P. Dastidar, H. Kuusisto, M. Ukkonen, H. Huhtala & I. Elovaara. (2005) Increased disability and MRI lesions after discontinuation of IFN-beta-1a in secondary progressive MS. Acta Neurologica Scandinavica 112:4, pages 242-247.
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I. Claude, J.-L. Daire & G. Sebag. (2004) Fetal Brain MRI: Segmentation and Biometric Analysis of the Posterior Fossa. IEEE Transactions on Biomedical Engineering 51:4, pages 617-626.
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Hanna Ainiala, Aki Hietaharju, Prasun Dastidar, Jukka Loukkola, Terho Lehtimäki, Jukka Peltola, Markku Korpela, Tomi Heinonen & Seppo T. Nikkari. (2004) Increased serum matrix metalloproteinase 9 levels in systemic lupus erythematosus patients with neuropsychiatric manifestations and brain magnetic resonance imaging abnormalities. Arthritis & Rheumatism 50:3, pages 858-865.
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M. Ukkonen, I. Elovaara, P. Dastidar & T. L. J. Tammela. (2004) Urodynamic findings in primary progressive multiple sclerosis are associated with increased volumes of plaques and atrophy in the central nervous system. Acta Neurologica Scandinavica 109:2, pages 100-105.
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M. Ukkonen, P. Dastidar, T. Heinonen, E. Laasonen & I. Elovaara. (2003) Volumetric quantitation by MRI in primary progressive multiple sclerosis: volumes of plaques and atrophy correlated with neurological disability. European Journal of Neurology 10:6, pages 663-669.
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Prasun Dastidar, Juhani Mäenpää, Tomi Heinonen, Tapio Kuoppala, Milko Van Meer, Reijo Punnonen & Erkki Laasonen. (2000) Magnetic resonance imaging based volume estimation of ovarian tumours: use of a segmentation and 3D reformation software. Computers in Biology and Medicine 30:6, pages 329-340.
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Ulrich Raff, Gonzalo M. Rojas, Michael Hutchinson & Jack H. Simon. (2000) Quantitation of T2 lesion load in patients with multiple sclerosis: A novel semiautomated segmentation technique. Academic Radiology 7:4, pages 237-247.
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P. Dastidar, T. Heinonen, T. Lehtimäki, M. Ukkonen, J. Peltola, T. Erilä, E. Laasonen & I. Elovaara. (1999) Volumes of brain atrophy and plaques correlated with neurological disability in secondary progressive multiple sclerosis. Journal of the Neurological Sciences 165:1, pages 36-42.
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P. Dastidar, T. Heinonen, T. Vahvelainen, I. Elovaara & H. Eskola. (1999) Computerised volumetric analysis of lesions in multiple sclerosis using new semi-automatic segmentation software. Medical & Biological Engineering & Computing 37:1, pages 104-107.
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