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DNA Sequence Volume 19, 2008 - Issue 3
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Original

Genome-wide analysis of SINA family in plants and their phylogenetic relationships†

Meng Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Meng Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Ying Jin State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Meng Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Ying Jin State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Junjie Fu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Meng Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Ying Jin State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Junjie Fu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Yun Zhu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Meng Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Ying Jin State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Junjie Fu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Yun Zhu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Jun Zheng Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
,
Meng Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Ying Jin State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Junjie Fu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Yun Zhu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Jun Zheng Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
,
Jian Hu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Meng Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Ying Jin State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Junjie Fu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Yun Zhu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Jun Zheng Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
,
Jian Hu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
&
Guoying Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China; Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
 show all
Pages 206-216 | Received 15 Feb 2007, Accepted 18 Jun 2007, Published online: 11 Jul 2009
 
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Abstract

SINA genes in plants are part of a multigene family with 5 members in Arabidopsis thaliana, 10 members in Populus trichocarpa, 6 members in Oryza sativa, at least 6 members in Zea mays and at least 1 member in Physcomitrella patens. Six members in maize were confirmed by RT-PCR. All SINAs have one RING domain and one SINA domain. These two domains are highly conserved in plants. According to the motif organization and phylogenetic tree, SINA family members were divided into 2 groups. In addition, through semi-quantitative RT-PCR analysis of maize members and Digital Northern analysis of Arabidopsis and rice members, we found that the tissue expression patterns are more diverse in monocot than in Arabidopsis.

Acknowledgements

This work was supported by the National High-tech Program (2006AA10A106) and the CultivationFund of the Key Scientific and Technical Innovation Project, China Ministry of Education (No: 705009).

Notes

Sequence data from this article have been deposited with the GenBank Data Libraries under Accession Nos. EF434382, EF434383, EF434384, EF434385, EF434386, EF434387.

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