Expression, purification, crystallization, and diffraction analysis of a selenomethionyl lipase Lip8 from Yarrowia lipolytica

ABSTRACT

Yarrowia lipolytica is a nonconventional model micro-organism with multiple biotechnological applications. It is also considered to be an excellent producer for lipase. Genome survey shows that Y. lipolytica possesses various paralogs of genes coding for extracellular, cell-bound, and intracellular lipolytic enzymes. However, little structural information on these isoenzymes is available. With the aim to facilitate crystal structure solution of Lip8, one of the most valuable lipases from Y. lipolytica, a less conventional protein expression technique—selenomethionyl protein expression was used to produce recombinant selenomethionine (SeMet)-Lip8 in Escherichia coli. Finally, three Met residues of Lip8 were all substituted with SeMet. A total of 72 mg of SeMet-Lip8 was obtained from a liter of the SeMet medium. Using sodium acetate as a precipitant and ammonium sulfate as an additive, crystals of the SeMet-Lip8 with 1.9 Å were successfully cultured through hanging-drop vapor diffusion method. The estimated crystal dimensions were 0.11 × 0.11 × 0.14 mm². The crystal belonged to the space group I4 with unit cell parameters a = b = 128.87 Å, c = 171.77 Å, α = β = γ = 90°. It is the second member of lipase crystal family from Y. lipolytica. This work will provide a platform for further studying lipases from a structural insight.

KEYWORDS:

• Crystal
• diffraction analysis
• expression
• lipase
• purification
• selenomethionine

Author’s contributions

Sheng Jun conceived of the study and participated in its design and coordination and helped to draft the manuscript. We thank Zheng Yuan for formatting and line-editing work on the manuscript. Ji XiaoFeng offered expertise in data collection of crystal. Sun Mi designed and supervised the research and helped to draft the manuscript.