Character-based identification key for commercially important fishes of Pulicat lake: tool for conservation and management

Abstract

Fishes are an important group of vertebrates in the animal world and make a significant contribution to global biodiversity. Fish is used as a source of food and contains many essential vitamins and fatty acids. The study of fish and their stability is important because, from year to year, fish stocks are often very important. For the conservation and management of these dwindling resources, correct identification of species is a prerequisite. Character-based methods of identification are of considerable use in this context, which classify specimens into species using classification rules that compactly describe species in terms of key diagnostic nucleotides in the gene sequences chosen. In this study, a total of 56 species of fishes distributed in Pulicat lake waters is taken as the target group. Mitochondrial CO1 sequences of each species were downloaded and modified. The species-specific diagnostic nucleotides for the selected group of species were identified using the BLOG version 2.0 software. Species-specific probes with a length range of 18–37 bp were designed on the basis of identified diagnostic nucleotide sites. The method is an effective tool for quickly and easily obtaining a significant amount of reliable information and could be used for forensic applications and conservation of fishes in Pulicat Lake.

Keywords:

• Pulicat lake
• BLOG2.0
• diagnostic nucleotides
• species specific-probes
• biodiversity

Disclosure statement

No potential conflict of interest was reported by the author(s).

Data availability statement

The NCBI database (https:/www.ncbi.nlm.nih.gov/nucleotide/) provides the data used in this analysis. Various molecular methods have been used to analyse the nucleotide data collected from NCBI and the results are presented in the manuscript. The specifics are given as a Supplementary Table 3.