The whole mitochondrial genome of the Cynomolgus macaque (Macaca fascicularis)

Abstract

Macaca fascicularis, known as the long-tailed macaque, is widely distributed in southern of East Asia and Southeast Asia. It was one of the most commonly used non-human primates in biomedical research. Thus, to illustrate the maternal phylogenetic status of M. fascicularis in primates based on the whole mitochondrial DNA (mtDNA) genome and determine a reference sequence for future population genetic studies by taking mtDNA as molecular marker, in this study, the high quality whole mtDNA genome of M. fascicularis was amplified and sequenced. Our data showed that the whole mtDNA genome of M. fascicularis includes 16,571 base pairs (bps). Further phylogenetic analyses of M. fascicularis were performed by incorporating the 83 available whole mtDNA genomes belonging to 77 primate species with Tupaia belangeri as out-group. Our result supported that M. fascicularis belongs to Macaca. Cercopithecinae. Cercopithecidae. Anthropoidea. Primates, which has the closest genetic affinity with Macaca mulatta. In addition, the ancestral divergence between the tarsier and other primate species was supported with evidence from the whole mtDNA genomes.

• Macaca fascicularis
• phylogenetic analysis
• whole mitochondrial DNA genome

Declaration of interest

This research was supported by the Natural Science Foundation of Yunnan Province (No. 2011FB106), the West Light Foundation of the Chinese Academy of Science, and the Foundation of State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academic of Science. The authors declare no conflicts of interest. The authors alone are responsible for the content and writing of this article.