Complete mitochondrial genome of the versicoloured emerald hummingbird Amazilia versicolor, a polymorphic species

Abstract

The genome of the versicoloured emerald hummingbird (Amazilia versicolor) was partially sequenced in one—sixth of an Illumina HiSeq lane. The mitochondrial genome was assembled using MIRA and MITObim software, yielding a circular molecule of 16,861 bp in length and deposited in GenBank under the accession number KF624601. The mitogenome contained 13 protein—coding genes, 22 transfer tRNAs, 2 ribosomal RNAs and 1 non—coding control region. The molecule was assembled using 21,927 sequencing reads of 100 bp each, resulting in ∼130 × coverage of uniformly distributed reads along the genome. This is the forth mitochondrial genome described for this highly diverse family of birds and may benefit further phylogenetic, phylogeographic, population genetic and species delimitation studies of hummingbirds.

• Atlantic Forest
• hummingbird
• mitochondrial genome
• next-generation-sequencing

Declaration of interest

This project was supported by Brazilian funding agency FAPERJ.