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Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 28, 2017 - Issue 1
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The complete chloroplast genome sequence of Panax vietnamensis Ha et Grushv (Araliaceae)

Binh NguyenDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea,
,
Kyunghee KimDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea, ;Phyzen Genomics Institute, Gwanak-Gu, Seoul, Republic of Korea,
,
Young-Chang KimDepartment of Herbal Crop Research, National Institute of Horticultural and Herbal Science, Rural Development Administration, Eumseong-Gun, Chungcheongbuk-Do, Republic of Korea, and
,
Sang-Choon LeeDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea,
,
Ji Eon ShinPhyzen Genomics Institute, Gwanak-Gu, Seoul, Republic of Korea,
,
Junki LeeDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea,
,
Nam-Hoon KimDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea,
,
Woojong JangDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea,
,
Hong-Il ChoiDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea, ;Advanced Radiation Technology Institute, Korea Atomic Energy Research Institute, Jeongeup, Republic of Korea
&
Tae-Jin YangDepartment of Plant Science, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea, Correspondence[email protected]
 show all
Pages 85-86 | Received 10 Oct 2015, Accepted 18 Oct 2015, Published online: 28 Dec 2015
 
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Abstract

The complete chloroplast genome sequence of Panax vietnamensis, a medicinal herb belonging to Araliaceae family, was generated by de novo assembly using whole genome next-generation sequences. The chloroplast genome was a circular form of 155 992 bp long and showed typical chloroplast genome structure consisting of a large single-copy region of 86 177 bp, a small single copy region of 17 935 bp and a pair of inverted repeats of 25 940 bp. The chloroplast genome had 79 protein-coding genes, 29 tRNA genes and 4 rRNA genes. The phylogenetic analysis with the reported chloroplast genomes revealed that four Panax species were grouped in the same clade and P. vietnamensis is more closely related to P. notoginseng than P. ginseng and P. quinquefolius.

Declaration of interest

This work was carried out with the support of “Cooperative Research Program for Agriculture Science & Technology Development (Project No. PJ01100801)”, Rural Development Administration, Republic of Korea.

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