Seabed Habitat Determines Fish and Macroinvertebrate Community Associations in a Subarctic Marine Coastal Nursery

References

• Adams, S. M. 1976. The ecology of eelgrass, Zostera marina (L.), fish communities I: structural analysis. Journal of Experimental Marine Biology and Ecology 22:269–291.
   Web of Science ®Google Scholar
• Anderson, M. J., R. N. Gorley, and K. R. Clarke. 2008. PERMANOVA+ for PRIMER: guide to software and statistical methods. PRIMER-E, Plymouth, UK.
   Google Scholar
• Beck, M. B., K. L. Heck Jr., K. W. Able, D. L. Childers, D. B. Eggleston, R. M. Gillanders, B. Halpern, C. H. Hays, K. Hoshino, T. J. Minello, R. J. Orth, P. F. Sheridan, and M. P. Weinstein. 2001. The identification, conservation, and management of estuarine and marine nurseries for fish and invertebrates. Bioscience 51:633–641.
   Google Scholar
• Becker, A., P. D. Cowley, and A. K. Whitfield. 2010. Use of remote underwater video to record littoral habitat use by fish within a temporarily closed South African estuary. Journal of Experimental Marine Biology and Ecology 391:161–168.
   Web of Science ®Google Scholar
• Birt, M. J., E. S. Harvey, and T. J. Langlois. 2012. Within and between day variability in temperate reef fish assemblages: learned response to baited video. Journal of Experimental Marine Biology and Ecology 416–417:92–100.
   Web of Science ®Google Scholar
• Bradbury, I. R., B. J. Laurel, D. Robichaud, G. A. Rose, P. V. R. Snelgrove, R. S. Gregory, D. Cote, and M. J. S. Windle. 2008. Discrete spatial dynamics in a marine broadcast spawner: re-evaluating scales of connectivity and habitat associations in Atlantic Cod (Gadus morhua L.) in coastal Newfoundland. Fisheries Research 91:299–309.
   Web of Science ®Google Scholar
• Bray, J. R., and J. T. Curtis. 1957. An ordination of upland forest communities of southern Wisconsin. Ecological Monographs 27:325–349.
   Web of Science ®Google Scholar
• Cappo, M., E. Harvey, H. Malcolm, and P. Speare. 2003. Potential of video techniques to monitor diversity, abundance and size of fish in studies of marine protected areas. Pages 445–464 in J. P. Beumer, A. Grant, and D. C. Smith, editors. Aquatic protected areas—what works best and how do we know? World Congress on Aquatic Protected Areas Proceedings, Cairns, Australia.
   Google Scholar
• Cappo, M., P. Speare, and G. De’ath. 2004. Comparison of baited remote underwater video stations (BRUVS) and prawn (shrimp) trawls for assessments of fish biodiversity in inter-reefal areas of the Great Barrier Reef Marine Park. Journal of Experimental Marine Biology and Ecology 302:123–152.
   Web of Science ®Google Scholar
• Clarke, A., and N. M. Johnston. 1999. Scaling of metabolic rate with body mass and temperature in teleost fish. Journal of Animal Ecology 68:893–905.
   Web of Science ®Google Scholar
• Clarke, K. R., and R. N. Gorley. 2006. PRIMER v6: user manual/tutorial. PRIMER-E, Plymouth, UK.
   Google Scholar
• Clarke, K. R., and R. H. Green. 1988. Statistical design and analysis for a ‘biological effects’ study. Marine Ecology Progress Series 46:213–226.
   Web of Science ®Google Scholar
• Cote, D., R. S. Gregory, C. J. Morris, B. H. Newton, and D. C. Schneider. 2013. Elevated habitat quality reduces variance in fish community composition. Journal of Experimental Marine Biology and Ecology 440:22–28.
   Web of Science ®Google Scholar
• Cote, D., L. M. N. Ollerhead, D. A. Scruton, and R. S. McKinley. 2003. Microhabitat use of juvenile Atlantic Cod in a coastal area of Newfoundland determined by 2D telemetry. Marine Ecology Progress Series 265:227–234.
   Web of Science ®Google Scholar
• Crowder, L. B., and W. E. Cooper. 1982. Habitat structural complexity and the interaction between Bluegills and their prey. Ecology 63:1802–1813.
   Web of Science ®Google Scholar
• Dalley, E. L., and J. T. Anderson. 1997. Distribution and abundance of demersal juvenile cod Gadus morhua in inshore and offshore areas of northeast Newfoundland (NAFO Divisions 3KL) in the early 1990s. Science 54(Supplement 1):168–176.
   Google Scholar
• Ebner, B. C., and D. L. Morgan. 2013. Using remote underwater video to estimate freshwater fish species richness. Journal of Fish Biology 82:1592–1612.
   PubMed Web of Science ®Google Scholar
• Franco, A., A. Pérez-Ruzafa, H. Drouineau, P. Franzoi, E. T. Koutrakis, M. Lepage, D. Verdiell-Cubedo, M. Bouchoucha, A. López-Capel, F. Riccato, A. Sapounidis, C. Marcos, F. J. Oliva-Paterna, M. Torralva-Forero, and P. Torricelli. 2012. Assessment of fish assemblages in coastal lagoon habitats: effect of sampling method. Estuarine, Coastal, and Shelf Science 112:115–125.
   Web of Science ®Google Scholar
• Fretwell, S. D. 1972. Populations in a seasonal environment. Princeton University Press, Princeton, New Jersey.
   Google Scholar
• Gorman, A. M., R. S. Gregory, and D. C. Schneider. 2009. Eelgrass patch size and proximity to the patch edge affect predation risk of recently settled age-0 cod (Gadus). Journal of Experimental Marine Biology and Ecology 371:1–9.
   Web of Science ®Google Scholar
• Gotceitas, V., S. Fraser, and J. A. Brown. 1997. Use of eelgrass beds (Zostera marina) by juvenile Atlantic Cod (Gadus morhua). Canadian Journal of Fisheries and Aquatic Sciences 54:1306–1319.
   Web of Science ®Google Scholar
• Gotceitas, V. S., and J. A. Brown. 1993. Substrate selection by juvenile Atlantic Cod (Gadus morhua): effects of predation risk. Oecologia 93:31–37.
   PubMed Web of Science ®Google Scholar
• Gower, J. C. 1966. Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika 53:325–338.
   Web of Science ®Google Scholar
• Gregory, R. S., and J. T. Anderson. 1997. Substrate selection and use of protective cover by juvenile Atlantic Cod Gadus morhua in inshore waters of Newfoundland. Marine Ecology Progress Series 146:9–20.
   Web of Science ®Google Scholar
• Gregory, R. S., J. T. Anderson, and E. L. Dalley. 1997. Distribution of juvenile Atlantic Cod (Gadus morhua) relative to available habitat in Placentia Bay, Newfoundland. Northwest Atlantic Fisheries Organization Scientific Council Studies 29:3–12.
   Google Scholar
• Gregory, R. S., C. Morris, B. Newton, and P. Sargent. 2016. Relative strength of the 2010, 2011 and 2012 year-classes from nearshore surveys of demersal age-0 and 1 Atlantic Cod in Newman Sound, Bonavista Bay. Canadian Science Advisory Secretariat Research Document 2016/081.
   Google Scholar
• Heck, K. L. Jr., G. Hays, and R. J. Orth. 2003. Critical evaluation of the nursery role hypothesis for seagrass meadows. Marine Ecology Progress Series 253:123–136.
   Web of Science ®Google Scholar
• Hurst, T. P., D. W. Cooper, J. T. Duffy-Anderson, and E. V. Farley. 2015. Contrasting coastal and shelf nursery habitats of Pacific Cod in the southeastern Bering Sea. ICES Journal of Marine Science 72:515–527.
   Web of Science ®Google Scholar
• Jenkins, G. P., T. Kenner, A. Brown, and R. Coleman. 2015. Fish assemblages in locations with alternative structured habitats in an eelgrass, Zostera, dominated bay: biodiversity value and potential for refuge. Estuarine, Coastal, and Shelf Science 161:25–37.
   Web of Science ®Google Scholar
• Johnson, A. F., S. R. Jenkins, J. G. Hiddink, and H. Hinz. 2013. Linking temperate demersal fish species to habitat: scales, patterns and future directions. Fish and Fisheries 14:256–280.
   Web of Science ®Google Scholar
• Kimirei, I. A., I. Nagelkerken, B. Griffioen, C. Wagner, and Y. D. Mgaya. 2011. Ontogenetic habitat use by mangrove/seagrass-associated coral reef fishes shows flexibility in time and space. Estuarine, Coastal, and Shelf Science 92:47–58.
   Web of Science ®Google Scholar
• Koster, F. W., H.-H. Hinrichsen, D. Schnack, M. A. St. John, B. R. Mackenzie, J. Tomkiewicz, C. Mollmann, G. Kraus, M. Plikshs, A. Makarchouk, and E. Aro. 2003. Recruitment of Baltic Cod and Sprat stocks: identification of critical life stages and incorporation of environmental variability into stock-recruitment relationships. Scientia Marina 67(Supplement A):129–154.
   Web of Science ®Google Scholar
• Laurel, B. J., and J. A. Brown. 2006. Influence of cruising and ambush predators on three-dimensional habitat use in age-0 juvenile Atlantic Cod Gadus morhua. Journal of Experimental Marine Biology and Ecology 329:34–46.
   Web of Science ®Google Scholar
• Laurel, B. J., R. S. Gregory, and J. A. Brown. 2003. Settlement and distribution of age-0 juvenile cod, Gadus morhua and G. ogac, following a large-scale habitat manipulation. Marine Ecology Progress Series 262:241–252.
   Web of Science ®Google Scholar
• Laurel, B. J., R. S. Gregory, J. A. Brown, J. K. Hancock, and D. C. Schneider. 2004. Behavioural consequences of density-dependent habitat use in juvenile cod Gadus morhua and G. ogac: the role of movement and aggregation. Marine Ecology Progress Series 272:257–270.
   Web of Science ®Google Scholar
• Laurel, B. J., A. W. Stoner, C. H. Ryer, T. P. Hurst, and A. A. Abookire. 2007. Comparative habitat associations in juvenile Pacific Cod and other gadids using seines, baited cameras and laboratory techniques. Journal of Experimental Marine Biology and Ecology 351:42–55.
   Web of Science ®Google Scholar
• Lilley, R. J., and R. K. F. Unsworth. 2014. Atlantic Cod (Gadus morhua) benefits from the availability of seagrass (Zostera marina) nursery habitat. Global Ecology and Conservation 2:367–377.
   Web of Science ®Google Scholar
• Linehan, J. E., R. S. Gregory, and D. C. Schneider. 2001. Predation of age-0 cod (Gadus) relative to depth and substrate in coastal waters. Journal of Experimental Marine Biology and Ecology 263:25–44.
   Web of Science ®Google Scholar
• Lough, R. G., P. C. Valentine, D. C. Potter, P. J. Auditore, G. R. Bolz, J. D. Neilson, and R. I. Perry. 1989. Ecology and distribution of juvenile cod and haddock in relation to sediment type and bottom currents on eastern Georges Bank. Marine Ecology Progress Series 56:1–12.
   Web of Science ®Google Scholar
• Lowry, M., H. Folpp, M. Gregson, and I. Suthers. 2012. Comparison of baited remote underwater video (BRUV) and underwater visual census (UVC) for assessment of artificial reefs in estuaries. Journal of Experimental Marine Biology and Ecology 416–417:243–253.
   Web of Science ®Google Scholar
• Mallet, D., and D. Pelletier. 2014. Underwater video techniques for observing coastal marine biodiversity: a review of 60 years of publications (1952–2012). Fisheries Research 154:44–62.
   Web of Science ®Google Scholar
• Mumby, P. J., A. J. Edwards, J. E. Arias-Gonzalez, K. C. Lindeman, P. G. Blackwell, A. Gall, M. I. Gorczynska, A. R. Harborne, C. L. Pescod, H. Renken, C. C. C. Wabnitz, and G. Llewellyn. 2004. Mangroves enhance the biomass of coral reef fish communities in the Caribbean. Nature 427:533–536.
   PubMed Web of Science ®Google Scholar
• Peterson, M. S., B. H. Comyns, J. R. Hendon, P. J. Bond, and G. A. Duff. 2000. Habitat use by early life-history stages of fishes and crustaceans along a changing estuarine landscape: differences between natural and altered shoreline sites. Wetlands Ecology and Management 8:209–219.
   Google Scholar
• Pierce, C. L., J. B. Rasmussen, and W. C. Leggett. 1990. Sampling littoral fish with a seine: corrections for variable capture efficiency. Canadian Journal of Fisheries and Aquatic Sciences 47:1004–1010.
   Web of Science ®Google Scholar
• Priede, I. G., and N. R. Merrett. 1996. Estimation of abundance of abyssal demersal fishes; a comparison of data from trawls and baited cameras. Journal of Fish Biology 49(Supplement A):207–216.
   Google Scholar
• R Core Team. 2013. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. Available: http://www.R-project.org/. (August 2017).
   Google Scholar
• Renkawitz, M. D., R. S. Gregory, and D. C. Schneider. 2011. Habitat dependent growth of three species of bottom settling fish in a coastal fjord. Journal of Experimental Marine Biology and Ecology 409:79–88.
   Web of Science ®Google Scholar
• Sargent, P. S., R. S. Gregory, and D. C. Schneider. 2006. Density responses of subarctic coastal marine fish and crabs to artificial reefs. Transactions of the American Fisheries Society 135:348–360.
   Web of Science ®Google Scholar
• Schneider, D. C., M. J. Norris, and R. S. Gregory. 2008. Predictive analysis of scale-dependent habitat association: juvenile cod (Gadus spp.) in eastern Newfoundland. Estuarine, Coastal, and Shelf Science 79:71–78.
   Google Scholar
• Shapiera, M., R. S. Gregory, C. J. Morris, C. J. Pennell, and P. V. R. Snelgrove. 2014. Season and site fidelity determine home range of dispersing and resident juvenile Greenland Cod Gadus ogac in a Newfoundland fjord. Marine Ecology Progress Series 503:235–246.
   Web of Science ®Google Scholar
• Smokorowski, K. E., and T. C. Pratt. 2007. Effect of a change in physical structure and cover on fish and fish habitat in freshwater ecosystems—a review and meta-analysis. Environmental Review 15:15–41.
   Google Scholar
• Sogard, S. M. 1992. Variability in growth rates of juvenile fishes in different estuarine habitats. Marine Ecology Progress Series 85:35–53.
   Web of Science ®Google Scholar
• Stobart, B., D. Díaz, F. Álvarez, C. Alonso, S. Mallol, and R. Goñi. 2015. Performance of baited underwater video: does it underestimate abundance at high population densities? PLOS (Public Library of Science) ONE [online serial] 10 (5):e0127559.
   Google Scholar
• Stobart, B., J. A. Garcia-Charton, C. Espejo, E. Rochel, R. Goñi, O. Renones, A. Herrero, R. Crec’hriou, S. Polti, C. Marcos, S. Planes, and A. Perez-Ruzafa. 2007. A baited underwater video technique to assess shallow-water Mediterranean fish assemblages: methodological evaluation. Journal of Experimental Marine Biology and Ecology 345:158–174.
   Web of Science ®Google Scholar
• Stoner, A. W., B. J. Laurel, and T. P. Hurst. 2008. Using a baited camera to assess relative abundance of juvenile Pacific Cod: field and Laboratory trials. Journal of Experimental Marine Biology and Ecology 354:202–211.
   Web of Science ®Google Scholar
• Thistle, M. E., D. C. Schneider, R. S. Gregory, and N. J. Wells. 2010. Fractal measures of habitat fragmentation: maximum densities of juvenile cod occur at intermediate eelgrass complexity. Marine Ecology Progress Series 405:39–56.
   Web of Science ®Google Scholar
• Tupper, M., and R. G. Boutilier. 1995a. Effects of conspecific density on settlement, growth and post-settlement survival of a temperate reef fish. Journal of Experimental Marine Biology and Ecology 191:209–222.
   Web of Science ®Google Scholar
• Tupper, M., and R. G. Boutilier. 1995b. Effects of habitat on settlement, growth, and postsettlement survival of Atlantic Cod (Gadus morhua). Canadian Journal of Fisheries and Aquatic Sciences 52:1834–1841.
   Web of Science ®Google Scholar
• Van De Wolfshaar, K. E., R. HilleRisLambers, and A. Gardmark. 2011. Effect of habitat productivity and exploitation on populations with complex life cycles. Marine Ecology Progress Series 438:175–184.
   Web of Science ®Google Scholar
• Walters, C. J., and F. Juanes. 1993. Recruitment limitation as a consequence of natural selection for use of restricted feeding habitats and predation risk taking by juvenile fishes. Canadian Journal of Fisheries and Aquatic Sciences 50:2058–2070.
   Web of Science ®Google Scholar
• Wentworth, C. K. 1922. A scale of grade and class terms for clastic sediments. Journal of Geology 30:377–392.
   Google Scholar
• Werner, E. E., and J. F. Gilliam. 1984. The ontogenetic niche and species interactions in size-structured populations. Annual Review of Ecology and Systematics 15:393–425.
   Google Scholar
• Whitmarsh, S. K., P. G. Fairweather, and C. Huveneers. 2017. What is big BRUVver up to? Methods and uses of baited underwater video. Reviews in Fish Biology and Fisheries 27:53–73.
   Web of Science ®Google Scholar
• Willis, T. J., and R. C. Babcock. 2000. A baited underwater video system for the determination of relative density of carnivorous reef fish. Marine Freshwater Research 51:755–763.
   Web of Science ®Google Scholar
• Yeh, J., and J. C. Drazen. 2011. Baited-camera observations of deep-sea megafaunal scavenger ecology on the California slope. Marine Ecology Progress Series 424:145–156.
   Web of Science ®Google Scholar