254
Views
0
CrossRef citations to date
0
Altmetric
Research Article

Changes in Biological Soil Health Properties in Response to Increased Crop Diversity in a Dryland Wheat-Based Cropping System

ORCID Icon, , ORCID Icon, ORCID Icon & ORCID Icon
Pages 2140-2156 | Received 12 May 2023, Accepted 15 Apr 2024, Published online: 24 Apr 2024

References

  • Acosta-Martínez, V., R. Lascano, F. Calderón, J. D. Booker, T. M. Zobeck, and D. R. Upchurch. 2011. Dryland cropping systems influence the microbial biomass and enzyme activities in a semiarid sandy soil. Biology and Fertility of Soils 47 (6):655–67. doi:10.1007/s00374-011-0565-1.
  • Acosta-Martínez, V., L. Pérez-Guzmán, and J. M. F. Johnson. 2019. Simultaneous determination of β-glucosidase, β-glucosaminidase, acid phosphomonoesterase, and arylsulfatase activities in a soil sample for a biogeochemical cycling index. Applied Soil Ecology 142:72–80. doi:10.1016/j.apsoil.2019.05.001.
  • Acosta-Martínez, V., and M. A. Tabatabai. 2000. Enzyme activities in a limed agricultural soil. Biology and Fertility of Soils 31 (1):85–91. doi:10.1007/s003740050628.
  • Agomoh, I. V., C. F. Drury, L. A. Phillips, W. D. Reynolds, and X. Yang. 2020. Increasing crop diversity in wheat rotations increases yields but decreases soil health. Soil Science Society of America Journal 84 (1):170–81. doi:10.1002/saj2.20000.
  • Ambus, P., L. K. Kure, and E. S. Jensen. 2002. Gross N transformation rates after application of household compost or domestic sewage sludge. Agronomie 22 (7–8):723–30. doi:10.1051/agro:2002041.
  • Aulakh, M. S., J. W. Doran, D. T. Walters, A. R. Mosier, and D. D. Francis. 1991. Crop residue type and placement effects on denitrification and mineralization. Soil Science Society of America Journal 55 (4):1020–25. doi:10.2136/sssaj1991.03615995005500040022x.
  • Baird, J. M., F. L. Walley, and S. J. Shirtliffe. 2010. Arbuscular mycorrhizal fungi colonization and phosphorus nutrition in organic field pea and lentil. Paphiopedilum, Dendrobium, and Cymbidium, Collected in Chiang Rai and Chiang Mai Provinces of Thailand Mycorrhiza 20 (8):541–49. doi:10.1007/s00572-010-0305-7.
  • Bates, D., M. Mächler, B. Bolker, and S. Walker. 2015. Fitting linear mixed-effects models using lme4. Journal of Statistical Software 67 (1). doi: 10.18637/jss.v067.i01.
  • Berti, M., R. Gesch, B. Johnson, Y. Ji, W. Seames, and A. Aponte. 2015. Double- and relay-cropping of energy crops in the northern Great Plains, USA. Industrial Crops and Products 75:26–34. doi:10.1016/j.indcrop.2015.05.012.
  • Biederbeck, V. O., R. P. Zentner, and C. A. Campbell. 2005. Soil microbial populations and activities as influenced by legume green fallow in a semiarid climate. Soil Biology and Biochemistry 37 (10):1775–84. doi:10.1016/j.soilbio.2005.02.011.
  • Bisanz, J. E. 2018. Qiime2R: Importing QIIME2 artifacts and associated data into R sessions. Version 0.99.6. R package. Accessed March 19, 2024. https://github.com/jbisanz/qiime2R.
  • Bolyen, E., J. R. Rideout, M. R. Dillon, N. A. Bokulich, C. C. Abnet, G. A. Al-Ghalith, H. Alexander, E. J. Alm, M. Arumugam, F. Asnicar, et al. 2019. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature Biotechnology 37 (8):852–57. doi:10.1038/s41587-019-0209-9.
  • Bradford, M. A., W. R. Wieder, G. B. Bonan, N. Fierer, P. A. Raymond, and T. W. Crowther. 2016. Managing uncertainty in soil carbon feedbacks to climate change. Nature Climate Change 6 (8):751–58. doi:10.1038/nclimate3071.
  • Calderón, F. J., D. Nielsen, V. Acosta-Martínez, M. F. Vigil, and D. Lyon. 2016. Cover crop and irrigation effects on soil microbial communities and enzymes in semiarid agroecosystems of the Central Great Plains of North America. Pedosphere 26 (2):192–205. doi:10.1016/s1002-0160(15)60034-0.
  • Callahan, B. J., P. J. McMurdie, M. J. Rosen, A. W. Han, A. J. Johnson, and S. P. Holmes. 2016. DADA2: High-resolution sample inference from illumina amplicon data. Nature Methods 13 (7):581–83. doi:10.1038/nmeth.3869.
  • Carr, P. M., J. M. Bell, D. L. Boss, P. DeLaune, J. O. Eberly, L. Edwards, H. Fryer, C. Graham, J. Holman, M. A. Islam, et al. 2021. Annual forage impacts on dryland wheat farming in the Great Plains. Agronomy Journal 113 (1):1–25. doi:10.1002/agj2.20513.
  • Carr, P. M., D. L. Boss, C. Chen, J. M. Dafoe, J. O. Eberly, S. Fordyce, R. M. Hydner, H. K. Fryer, J. A. Lachowiec, P. F. Lamb, et al. 2020. Warm‐season forage options in Northern Dryland Regions. Agronomy Journal 112 (5):3239–53. doi:10.1002/agj2.20261.
  • Daryanto, S., B. Fu, L. Wang, P.-A. Jacinthe, and W. Zhao. 2018. Quantitative synthesis on the ecosystem services of cover crops. Earth-Science Reviews 185:357–73. doi:10.1016/j.earscirev.2018.06.013.
  • de Mendiburu, F. 2021. Statistical procedures for agricultural research. agricolae: https://CRAN.R-project.org/package=agricolae.
  • Deng, S. P., J. M. Moore, and M. A. Tabatabai. 2000. Characterization of active nitrogen pools in soils under different cropping systems. Biology and Fertility of Soils 32 (4):302–09. doi:10.1007/s003740000252.
  • Deng, S. P., and M. A. Tabatabai. 2000. Effect of cropping systems on nitrogen mineralization in soils. Biology and Fertility of Soils 31 (3–4):211–18. doi:10.1007/s003740050647.
  • Ekenler, M., and M. A. Tabatabai. 2007. β-Glucosaminidase activity as an index of nitrogen mineralization in soils. Communications in Soil Science and Plant Analysis 35 (7–8):1081–94. doi:10.1081/css-120030588.
  • Fierer, N., S. A. Wood, and C. P. Bueno de Mesquita. 2021. How microbes can, and cannot, be used to assess soil health. Soil Biology & Biochemistry 153:108111. doi:10.1016/j.soilbio.2020.108111.
  • Figuerola, E. L. M., L. D. Guerrero, D. Türkowsky, L. G. Wall, and L. Erijman. 2014. Crop monoculture rather than agriculture reduces the spatial turnover of soil bacterial communities at a regional scale. Environmental Microbiology 17 (3):678–88. doi:10.1111/1462-2920.12497.
  • Frasier, I., E. Noellemeyer, E. Figuerola, L. Erijman, H. Permingeat, and A. Quiroga. 2016. High quality residues from cover crops favor changes in microbial community and enhance C and N sequestration. Global Ecology and Conservation 6:242–56. doi:10.1016/j.gecco.2016.03.009.
  • Ghimire, R., B. Ghimire, A. O. Mesbah, U. M. Sainju, and O. J. Idowu. 2019a. Soil health response of cover crops in winter wheat–fallow system. Agronomy Journal 111 (4):2108–15. doi:10.2134/agronj2018.08.0492.
  • Ghimire, R., V. R. Thapa, A. Cano, and V. Acosta-Martinez. 2019b. Soil organic matter and microbial community responses to semiarid croplands and grasslands management. Applied Soil Ecology 141:30–37. doi:10.1016/j.apsoil.2019.05.002.
  • Hansen, J. C., W. F. Schillinger, T. S. Sullivan, and T. C. Paulitz. 2020. Decline in soil microbial abundance when camelina introduced into a monoculture wheat system. Frontiers in Microbiology 11:571178. doi:10.3389/fmicb.2020.571178.
  • Housman, M., S. Tallman, C. Jones, P. Miller, and C. Zabinski. 2021. Soil biological response to multi-species cover crops in the Northern Great Plains. Agriculture, Ecosystems & Environment 313:313. doi:10.1016/j.agee.2021.107373.
  • Ishaq, S. L., S. P. Johnson, Z. J. Miller, E. A. Lehnhoff, S. Olivo, C. J. Yeoman, and F. D. Menalled. 2017. Impact of cropping systems, soil inoculum, and plant species identity on soil bacterial community structure. Microbial Ecology 1–18. doi:10.1007/s00248-016-0861-2.
  • Jenkinson, D. S., and D. S. Powlson. 1976. The effects of biocidal treatments on metabolism in soil—V: A method for measuring soil biomass. Soil Biology & Biochemistry 8 (3):209–13. doi:10.1016/0038-0717(76)90005-5.
  • Kandel, T. P., P. H. Gowda, B. K. Northup, and A. C. Rocateli. 2019. Soil respiration from winter wheat-based cropping systems in the US Southern Great Plains as influenced by tillage managements. Acta Agriculturae Scandinavica 69 (5):377–85. doi:10.1080/09064710.2019.1582691.
  • Kassambara, A. (2020). Ggpubr: ‘Ggplot2’ based publication ready plots. https://CRAN.R-project.org/package=ggpubr.
  • Kolberg, R. L., C. R. Johnson, and G. A. Peterson. 1999. Influence of cropping intensity and nitrogen fertilizer rates on in situ nitrogen mineralization. Soil Science Society of America Journal 63 (1):129–34. doi:10.2136/sssaj1999.03615995006300010019x.
  • Kõljalg, U., H. R. Nilsson, D. Schigel, L. Tedersoo, K.-H. Larsson, T. W. May, A. F. S. Taylor, T. S. Jeppesen, T. G. Frøslev, B. D. Lindahl, et al. 2020. The taxon hypothesis paradigm—on the unambiguous detection and communication of taxa. Microorganisms [Internet] 8 (12):1910. doi:10.3390/microorganisms8121910.
  • Kuznetsova, A., P. B. Brockhoff, and R. H. B. 2017. Christensen 2017. lmerTest package: Tests in linear mixed effects models. Journal of Statistical Software 82 (13):1–26. doi:10.18637/jss.v082.i13.
  • Lambers, H., and F. P. Teste. 2013. Interactions between arbuscular mycorrhizal and non-mycorrhizal plants: Do non-mycorrhizal species at both extremes of nutrient availability play the same game? Plant, Cell & Environment 36 (11):1911–15. doi:10.1111/pce.12117.
  • Lenssen, A. W., and S. D. Cash. 2011. Annual warm-season grasses vary for forage yield, quality, and competitiveness with weeds. Archives of Agronomy and Soil Science 57 (8):839–52. doi:10.1080/03650340.2010.498012.
  • López-Fando, C., and M. T. Pardo. 2011. Soil carbon storage and stratification under different tillage systems in a semi-arid region. Soil and Tillage Research 111 (2):224–30. doi:10.1016/j.still.2010.10.011.
  • Lupwayi, N. Z., G. W. Clayton, K. G. Hanson, W. A. Rice, and V. O. Biederbeck. 2004. Endophytic rhizobia in barley, wheat and canola roots. Canadian Journal of Plant Science 84 (1):37–45. doi:10.4141/p03-087.
  • Lupwayi, N. Z., and A. Kennedy. 2007. Grain legumes in northern great plains. Agronomy Journal 99 (6):1700–09. doi:10.2134/agronj2006.0313s.
  • McMurdie, P. J., S. Holmes, and M. Watson. 2013. Phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data. Public Library of Science ONE 8 (4):e61217. doi:10.1371/journal.pone.0061217.
  • Meccage, E., P. M. Carr, M. Bourgault, K. McVay, and D. Boss. 2019. Potential of annual forages in the Northern Great Plains. Crops & Soils 52 (1):18–22. doi:10.2134/cs2019.52.0101.
  • Mori, T., R. Aoyagi, K. Kitayama, and J. Mo. 2021. Does the ratio of β-1,4-glucosidase to β-1,4-N-acetylglucosaminidase indicate the relative resource allocation of soil microbes to C and N acquisition? Soil Biology and Biochemistry 160:160. doi:10.1016/j.soilbio.2021.108363.
  • Murphy, C. J., E. M. Baggs, N. Morley, D. P. Wall, and E. Paterson. 2017. Nitrogen availability alters rhizosphere processes mediating soil organic matter mineralisation. Plant and Soil 417 (1–2):499–510. doi:10.1007/s11104-017-3275-0.
  • Norris, C. E., G. M. Bean, S. B. Cappellazzi, M. Cope, K. L. H. Greub, D. Liptzin, E. L. Rieke, P. W. Tracy, C. L. S. Morgan, C. W. Honeycutt, et al. 2020. Introducing the North American project to evaluate soil health measurements. Agronomy Journal 112 (4):3195–215. doi:10.1002/agj2.20234.
  • Oksanen, J. 2018. Vegan: Community Ecology Package. R Package Version 25-3 (2):1–2.
  • Ouverson, T., J. Eberly, T. Seipel, F. D. Menalled, and S. L. Ishaq. 2021. Temporal soil bacterial community responses to cropping systems and crop identity in dryland agroecosystems of the Northern Great Plains. Frontiers in Sustainable Food Systems 5 (75). doi: 10.3389/fsufs.2021.624242.
  • Parham, J. A., and S. P. Deng. 2000. Detection, quantification and characterization of β-glucosaminidase activity in soil. Soil Biology and Biochemistry 32 (8–9):1183–90. doi:10.1016/S0038-0717(00)00034-1.
  • Quast, C., E. Pruesse, P. Yilmaz, J. Gerken, T. Schweer, P. Yarza, J. Peplies, and F. O. Glockner. 2013. The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools. Nucleic Acids Research 41 (D1):D590–596. doi:10.1093/nar/gks1219.
  • Ryan, M. G., and B. E. Law. 2005. Interpreting, measuring, and modeling soil respiration. Biogeochemistry 73 (1):3–27. doi:10.1007/s10533-004-5167-7.
  • Sainju, U. M., J. D. Jabro, and T. Caesar-Tonthat. 2010. Tillage, cropping sequence, and nitrogen fertilization effects on dryland soil carbon dioxide emission and carbon content. Journal of Environmental Quality 39 (3):935–45. doi:10.2134/jeq2009.0223.
  • Schimel, J. P., and J. Bennett. 2004. Nitrogen mineralization: Challenges of a changing paradigm. Ecology 85 (3):591–602. doi:10.1890/03-8002.
  • Simmons, T., A. B. Styer, G. Pierroz, A. P. Gonçalves, R. Pasricha, A. B. Hazra, P. Bubner, and D. Coleman-Derr. 2020. Drought drives spatial variation in the millet root microbiome. Frontiers in Plant Science 11:11. doi:10.3389/fpls.2020.00599.
  • Stark, J. M., and M. K. Firestone. 1995. Mechanisms for soil moisture effects on activity of nitrifying bacteria. Applied and Environmental Microbiology 61 (1):218–21. doi:10.1128/aem.61.1.218-221.1995.
  • Stewart, R. D., J. Jian, A. J. Gyawali, W. E. Thomason, B. D. Badgley, M. S. Reiter, and M. S. Strickland. 2018. What we talk about when we talk about soil health. Agricultural & Environmental Letters 3 (1). doi:10.2134/ael2018.06.0033.
  • Tabatabai, M. A. 1994. Soil enzymes. Methods of soil analysis: Part 2—microbiological and biochemical properties. P. S. Bottomley, J. S. Angle and R. W. Weaver. Madison, WI: Soil Science Society of America.
  • Tabatabai, M. A., M. Ekenler, and Z. N. Senwo. 2010. Significance of enzyme activities in soil nitrogen mineralization. Communications in Soil Science and Plant Analysis 41 (5):595–605. doi:10.1080/00103620903531177.
  • Team, R. C. 2023. R: A language and environment for statistical computing. R foundation for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
  • Thapa, V. R., R. Ghimire, V. Acosta-Martínez, M. A. Marsalis, and M. E. Schipanski. 2021. Cover crop biomass and species composition affect soil microbial community structure and enzyme activities in semiarid cropping systems. Applied Soil Ecology 157:157. doi:10.1016/j.apsoil.2020.103735.
  • Tian, L., Y. Wang, J. Yang, L. Zhang, and B. Feng. 2022. Rhizosphere bacterial community structure of three minor grain crops: A case-study from paired field sites in northern China. Land Degradation & Development 33 (1):104–16. doi:10.1002/ldr.4132.
  • Tiemann, L. K., A. S. Grandy, E. E. Atkinson, E. Marin-Spiotta, M. D. McDaniel, and D. Hooper. 2015. Crop rotational diversity enhances belowground communities and functions in an agroecosystem. Ecology Letters 18 (8):761–71. doi:10.1111/ele.12453.
  • VandenBygaart, A. J., and D. A. Angers. 2006. Towards accurate measurements of soil organic carbon stock change in agroecosystems. Canadian Journal of Soil Science 86 (3):465–71. doi:10.4141/s05-106.
  • Vigil, M. F., B. Eghball, M. L. Cabrera, B. R. Jakubowski, and J. G. Davis. 2002. Accounting for seasonal nitrogen mineralization: An overview. Journal of Soil and Water Conservation 57 (6):464–69.
  • Voroney, R. P., and E. A. Paul. 1984. Determination of kC and kNin situ for calibration of the chloroform fumigation-incubation method. Soil Biology and Biochemistry 16 (1):9–14. doi:10.1016/0038-0717(84)90117-2.
  • Whitlock, C., W. Cross, B. Maxwell, N. Silverman, and A. Wade. 2017. 2017 Montana Climate Assessment, 318. Missoula, MT: Montana State University and University of Montana, Montana Institute on Ecosystems. doi:10.15788/m2ww8w.
  • Wickham, H. 2016. ggplot2: Elegant graphics for data analysis. New Yourk: Springer-Verlag.
  • Wienhold, B. J. 2007. Comparison of laboratory methods and an in situ method for estimating nitrogen mineralization in an irrigated silt‐loam soil. Communications in Soil Science and Plant Analysis 38 (13–14):1721–32. doi:10.1080/00103620701435498.
  • Wu, S. C., Z. H. Cao, Z. G. Li, K. C. Cheung, and M. H. Wong. 2005. Effects of biofertilizer containing N-fixer, P and K solubilizers and AM fungi on maize growth: A greenhouse trial. Geoderma 125 (1–2):155–66. doi:10.1016/j.geoderma.2004.07.003.
  • Zhao, J., H. Lange, and H. Meissner. 2020. Gap-filling continuously-measured soil respiration data: A highlight of time-series-based methods. Agricultural and Forest Meteorology 285-286:285–86. doi:10.1016/j.agrformet.2020.107912.