134
Views
8
CrossRef citations to date
0
Altmetric
Article

Effect of formalin on extraction of mRNA from a formalin‐fixed sample: a basic investigation

, , &
Pages 229-236 | Received 23 Oct 2003, Accepted 20 Feb 2004, Published online: 08 Jul 2009

References

  • Chomczynski P, Sacchi N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-choloroform extraction. Anal Biochem 1987; 162: 156.
  • McAllister HA, Rock DL. Comparative use fullness of tissue fixatives for in situ viral nucleic acid hybridization. J Histochem Cytochem 1985; 33: 1026–32.
  • Nuovo GJ, Gallery F, Hom R, MacConnell P, Bloch W. Importance of different variables for enhancing in situ detection of PCR-amplified DNA. PCR Methods Appl 1993; 2: 305.
  • Xu X-C, Clifford JL, Hong WK, Lotan R. Detection of nuclear retinoic acid receptor mRNA in histological tissue section using hybri-dization histochemistry. Diagn Mol Pathol 1994; 3: 122.
  • Thomas BG, Tietjen CF, Mjaaedt CH, Yang VW. Cellular localization of the class I alcohol dehydrogenase transcript in adult rat tissues. Histochem J 1994; 26: 526.
  • Lacey RJ, Chan SLF, Cable HC, James RFL, Perrett CW, Scarpello JHB, Morgan NG. Expres-sion of adrenoceptor subtypes in human islets of Langerhans. J Endocrinol 1996; 148: 531.
  • Tsuji S, Hisaoka M, Morimitsu Y, Hashimoto H, Shimajiri S, Komiya S, Ushijima M, Nakamura T. Detection of SYT-SSX fusion transcripts in syn-ovial sarcoma reaction using archival paraffin-embedded tissues. Am J Pathol 1998; 153: 1807.
  • Karsten SL, Van Deerlin VMD, Sabatti C, Gill LH, Geschwind DH. An evaluation of tyramide signal amplification and archived fixed and frozen tissue in microarray gene expression analysis. Nucleic Acids Res 2002; 30
  • Urieli-shoval S, Meek RL, Hanson RH, Ferguson M, Gordon D, Benditt EP. Preservation of RNA for in situ hybridization: Camoy's versus form-aldehyde fixation. J Histochem Cytochem 1992; 40: 1879.
  • Mizuno T, Nagamura H, Iwamoto KS, Ito T, Fukuhara T, Tokunaga M, Tokuoka S, Mabuchi K, Seyama T. RNA from decades-old archival tissue blocks for retrospective studies. Diagn Mol Pathol 1998; 7: 202–8.
  • Leutenegger CM, von Rechenberg B, Huder JB, Zlinsky K, Mislin C, Akens MK, Auer J, Lutz H. Quantitative real-time PCR for equine cytokine mRNA in nondecalcified bone tissue embedded in methyl methacrylate. Calcif Tissue Int 1999; 65: 378.
  • Wei S-JC, Chang RL, Merkler KA, Gwynne M, Cui XX, Murthy B, Huang M-T, Xie J-G, Lu Y-P, Lou Y-R, Jerina DM, Conney AH. Dose-dependent mutation profile in the c-Ha-ras proto-oncogene of skin tumors in mice initiated with benzoapyrene. Carcinogenesis 1999; 29: 1689.
  • Sheils OM, Sweeney EC. TSH receptor status of thyroid neoplasms-Taqman RT-RCR analysis of archival material. J Pathol 1999; 188: 87–92.
  • Sato H, Fujiwara S, Terada K, Sato Y, Tsuto Y, Ikoma T, Aihara H, Yanagisawa A, Horiike T. mRNA detection of myosin heavy chain gene in the autopsy cases of hypertrophic cardiomyo-pathy. Nippon Hoigaku Zasshi 2000; 54: 408.
  • Gillespie JW, Best CJM, Bichsel VE, Cole KA, Greenhut SF, Hewitt SM, Ahram M, Gathright YB, Merino MJ, Strausberg RL, Epstein JI, Hamilton SR, Gannot G, Baibakova GV, Calvert VS, Flaig MJ, Chuaqui RF, Herring JC, Pfeifer J, Petricoin EF, Linehan WM, Duray PH, Bova GS, Emmert-Buck MR. Evaluation of non-formalin tissue fixation for molecular profiling studies. Am J Pathol 2002; 160: 449.
  • Tamborini E, Agus V, Perrone F, Papini D, Romano R, Pasini B, Gronchi A, Colecchia M, Rosai J, Pierotti MA, Pilotti S. Lack of SYT-SSX fusion transcripts in malignant peripheral nerve sheath tumors on RT-PCR analysis of 34 archival cases. Lab Invest 2002; 82: 609–18.
  • Neubauer A, Neubauer B, He M, Effert P, Iglehart D, Frye RA, Liu E. Analysis of gene amplification in archival tissue by differential poly-merase chain reaction. Oncogene 1992; 7: 1019–25.
  • Finke J, Fritzen R, Temes P, Lange W, Dolken G. An improved strategy and a useful housekeeping gene for RNA analysis from formalin-fixed, paraffin-embedded tissue by PCR. Biotechniques 1993; 14: 448–53.
  • Foss RD, Thakurta NG, Conran RM, Gutman P. Effects of fixative and fixation time on the extraction and polymerase chain reaction amplifi-cation of RNA from paraffin-embedded tissue. Diagn Mol Pathol 1994; 3: 148.
  • Bresters D, Schipper ME, Reesink HW, Boeser-Nunnink BD, Cuypers HT. The duration of fixation influences the yield of HCV cDNA-PCR products from formalin-embedded liver tissue. J Virol Methods 1994; 48: 267–72.
  • Toyooka KO, Toyooka S, Maitra A, Feng Q, Kiviat NC, Smith A, Minna JD, Ashfaq R, Gazdar AF. Establishment and validation of real-time polymerase chain reaction method for CDH1 promoter methylation Am J Pathol 2002; 161: 629–34.
  • Brachtel EF, Mascola JR, Wear DJ, Ehrenberg PK, Dayhoff DE, Sanders-Buell E, Michael NL, Frankel SS. Demonstration of de novo HIV type 1 production by detection of multiply spliced and unspliced HIV type 1 RNA in paraffin-embedded tonsils. AIDS Res Hum Retroviruses 2002; 18: 785–90.
  • Masuda N, Ohnishi T, Kawamoto S, Monden M, Okubo K. Analysis of chemical modification of RNA from formalin-fixed samples and optimiza-tion of molecular biology application for such samples. Nucleic Acids Res 1999; 27: 4436.
  • Lewis F, Maughan NJ, Smith V, Hillan K, Quirke P. Unlocking the archive- gene expression in paraffin-embedded tissue. J Pathol 2001; 195: 66.
  • El-Sherif AM, Seth R, Tighe PJ, Jenkins D. Quantitative analysis of IL-10 and IFN mRNA levels in normal cervix and human papillomavirus type 16 associated cervical precancer. J Pathol 2001; 195: 179.
  • Yongkun W, Jian W, Xiongzeng Z, Daren S, Hisaoka M, Hashimoto H. Detection of SYT-SSX fusion transcripts in paraffin-embedded tissues of synovial sarcoma by reverse transcription-polymerase chain reaction. Chin Med J (Engl) 2002; 115: 1043–7.
  • Specht K, Kremer M, Muller U, Dimhofer S, Rosemann M, Hofler H, Quintanilla-Martinez L, Fend F. Identification of cyclin D1 mRNA overexpression in B-cell neoplasias by real-time reverse transcription-PCR of microdissected par-affin sections. Clin Cancer Res 2002; 8: 2902–11.
  • Argani P, Zakowski MF, Klimstra DS, Rosai J, Ladanyi M. Detection of the SYT-SSX chimeric RNA of synovial sarcoma in paraffin-embedded tissue and its application in problematic cases. Mod Pathol 1998; 11: 65.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.