62
Views
49
CrossRef citations to date
0
Altmetric
Original Articles

Structure and functional analyses of bacterial communities changes in microbial mats following petroleum exposure

, , , , &
Pages 195-203 | Published online: 19 Dec 2011

References

  • Abed , R.M. , Safi , N.M. , Koster , J. , de Beer , D. , El-Nahhal , Y , Rullkotter , J. and Garcia-Pichel , F. 2002 . Microbial diversity of a heavily polluted microbial mat and its community changes following degradation of petroleum compounds . Appl. Environ. Microbiol. , 68 ( 4 ) : 1674 – 1683 .
  • Blackwood , C.B. , Marsh , T. , Kim , S.H. and Paul , E.A. 2003 . Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities . Appl. Environ. Microbiol. , 69 ( 2 ) : 926 – 932 .
  • Brezna , B. , Khan , AA and Cerniglia , C.E. 2003 . Molecular characterization of dioxygenases from polycyclic aromatic hydrocarbon-degrading Mycobacterium spp. . FEMS Microbiol. Lett. , 223 ( 2 ) : 177 – 183 .
  • Caumette , P , Matheron , R , Raymond , N. and Relexans , J.-C. 1994 . Microbial mats in the hypersaline ponds of Mediterranean salterns (Salins-de-Giraud, France). . FEMS Microbiol. Ecol. , 13 : 273 – 286 .
  • Cerniglia , C.E. , Van Baalen , C. and Gibson , D.T. 1980 . Oxidation of biphenyl by the cyanobacterium, Oscillatoria sp., strain JCM . Arch. Microbiol. , 125 ( 3 ) : 203 – 207 .
  • Contzen , M. and Stolz , A. 2000 . Characterization of the genes for two protocatechuate 3, 4-dioxygenases from the 4-sulfocatechol-degrading bacterium Agrobacterium radiobacter strain S2 . J. Bacteriol. , 182 ( 21 ) : 6123 – 6129 .
  • Dahllof , I. 2002 . Molecular community analysis of microbial diversity . Curr. Opin. Biotechnol. , 13 ( 3 ) : 213 – 217 .
  • Ensley , B.D. , Gibson , D.T. and Laborde , A.L. 1982 . Oxidation of naphthalene by a multicomponent enzyme system from Pseudomonas sp. strain NCIB 9816 . J. Bacteriol. , 149 ( 3 ) : 948 – 954 .
  • Feng , Y. , Khoo , H.E. and Poh , C.L. 1999 . Purification and characterization of gentisate 1,2-dioxygenases from Pseudomonas alcaligenes NCIR 9867 and Pseudomonas putida NCIB 9869 . Appl. Environ. Microbiol. , 65 ( 3 ) : 946 – 950 .
  • Giani , D , Seeler , J , Giani , L. and Wolfgang , E.K. 1989 . Microbial mats and physiochemistry in a saltern in the Bretagne (France) and in a laboratory scale saltern model. . FEMS Microbiol. Ecol. , 62 : 151 – 162 .
  • Haddad , S. , Eby , D.M. and Neidle , E.L. 2001 . Cloning and expression of the benzoate dioxygenase genes from Rhodococcus sp. strain 19070 . Appl. Environ. Microbiol. , 67 ( 6 ) : 2507 – 2514 .
  • Hoffmann , L. 1996 . “ Recolonisation of the intertidal flats by microbial mats after the Gulf War oil spill ” . In A marine wildlife sanctuary for the Arabian Gulf: environmental research and conservation following the 1991 Gulf War oil spill , Edited by: Krupp , F. , Abuzinada , A.H. and Nader , I.A . 96 – 115 . Frankfurt, , Germany : Riyad, Saudi Arabia, and Seneckenberg Research Institue . In
  • Kanaly , RA , Bartha , R. , Watanabe , K. and Harayama , S. 2000 . Rapid mineralization of benzo[a]pyrene by a microbial consortium growing on diesel fuel . Appl. Environ. Microbiol. , 66 ( 10 ) : 4205 – 4211 .
  • Kanaly , R.A. , Harayama , S. and Watanabe , K. 2002 . Rhodanobacter sp. strain BPC1 in a benzo[a]pyrenemineralizing bacterial consortium . Appl. Environ. Microbiol. , 68 ( 12 ) : 5826 – 5833 .
  • Rang , B.S. , Ha , J.Y. , Lim , J.C. , Lee , J. , Kim , C.K. , Min , K.R. and Kim , Y. 1998 . Structure of catechol 2,3-dioxygenase gene from Alcaligenes eutrophus 335 . Biochem. Biophys. Res. Commun. , 245 ( 3 ) : 791 – 796 .
  • Kasai , Y. , Kishira , H. , Syutsubo , K. and Harayama , S. 2001 . Molecular detection of marine bacterial populations on beaches contaminated by the Nakhodka tanker oil-spill accident . Environ. Microbiol. , 3 ( 4 ) : 246 – 255 .
  • Khan , A.A. , Wang , R.F. , Cao , W.W. , Doerge , D.R. , Wennerstrom , D. and Cerniglia , C.E. 2001 . Molecular cloning, nucleotide sequence, and expression of genes encoding a polycyclic aromatic ring dioxygenase from Mycobactenum sp. strain PYR-1 . Appl. Environ. Microbiol. , 67 ( 8 ) : 3577 – 3585 .
  • Lane , D.J. 1991 . “ 16S/23S rRNA sequencing ” . In Nucleic acid techniques in bacterial systematics , Edited by: Stackenbradt , E. and Goodfellow , M. 115 – 175 . Chichester : Wiley . In
  • Leahy , J.G. and Colwell , R.R. 1990 . Microbial degradation of hydrocarbons in the environment . Microbiol. Rev. , 54 ( 3 ) : 305 – 315 .
  • Liu , W.T. , Marsh , T.L. , Cheng , H. and Forney , L.J. 1997 . Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA . Appl. Environ. Microbiol. , 63 ( 11 ) : 4516 – 4522 .
  • MacNaughton , S.J. , Stephen , J.R. , Venosa , A.D. , Davis , G.A. , Chang , Y.J. and White , D.C. 1999 . Microbial population changes during bioremediation of an experimental oil spill . Appl. Environ. Microbiol. , 65 ( 8 ) : 3566 – 3574 .
  • Megharaj , M. , Singleton , I. , McClure , N.C. and Naidu , R. 2000 . Influence of petroleum hydrocarbon contamination on microalgae and microbial activities in a long-term contaminated soil . Arch. Environ. Contam. Toxicol. , 38 ( 4 ) : 439 – 445 .
  • Moser , R. and Stahl , U. 2001 . Insights into the genetic diversity of initial dioxygenases from PAH-degrading bacteria . Appl. Microbiol. Biotechnol. , 55 ( 5 ) : 609 – 618 .
  • Muyzer , G. , de Waal , E.C. and Uitterlinden , A.G. 1993 . Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA . Appl. Environ. Microbiol. , 59 ( 3 ) : 695 – 700 .
  • Muyzer , G. , Teske , A. , Wirsen , C.O. and Jannasch , H.W. 1995 . Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments . Arch. Microbiol. , 164 ( 3 ) : 165 – 172 .
  • Narro , M.L. , Cerniglia , C.E. , Van Baalen , C. and Gibson , D.T. 1992 . Metabolism of phenanthrene by the marine cyanobacterium Agmenellum quadruplicatum PR-6 . Appl. Environ. Microbiol. , 58 ( 4 ) : 1351 – 1359 .
  • Nogales , B. , Moore , E.R. , Llobet-Brossa , E. , Rossello-Mora , R. , Amann , R. and Timmis , K.N. 2001 . Combined use of 16S ribosomal DNA and 16S rRNA to study the bacterial community of polychlorinated biphenyl-polluted soil . Appl. Environ. Microbiol. , 67 ( 4 ) : 1874 – 1884 .
  • Olsen , G.J , Lane , D.J , Giovannoni , S.J , Pace , N.R. and Stahl , D.A. 1986 . Microbial ecology and evolution: a ribosomal RNA approach. . Annu. Rev. Microbiol. , 40 : 337 – 365 .
  • Precigou , S. , Goulas , P. and Duran , R. 2001 . Rapid and specific identification of nitrile hydratase (NHase)-encoding genes in soil samples by polymerase chain reaction . FEMS Microbiol. Lett. , 204 ( 1 ) : 155 – 161 .
  • Radwan , S.S. and Al-Hasan , R.H. 2000 . “ Oil pollution and cyanobacteria ” . In The ecology of cyanobacteria , Edited by: Whitton , B. A. and Potts , M. 307 – 319 . Dordrecht, , The Netherlands : Kluwer Academic Publishers . In
  • Resnick , S.M. and Gibson , D.T. 1996 . Regio- and stereospecific oxidation of fluorene, dibenzofuran, and dibenzothiophene by naphthalene dioxygenase from Pseudomonas sp. strain NCIB 9816-4 . Appl. Environ. Microbiol. , 62 ( 11 ) : 4073 – 4080 .
  • Richardson , R.E. , Bhupathiraju , V.K. , Song , D.L. , Goulet , T.A. and Alvarez-Cohen , L. 2002 . Phylogenetic characterization of microbial communities that reductively dechlorinate TCE based upon a combination of molecular techniques . Environ. Sci. Technol. , 36 ( 12 ) : 2652 – 2662 .
  • Rios-Hernandez , LA. , Gieg , L.M. and Suflita , J.M. 2003 . Biodegradation of an alicyclic hydrocarbon by a sulfate-reducing enrichment from a gas condensate-contaminated aquifer . Appl. Environ. Microbiol. , 69 ( 1 ) : 434 – 443 .
  • Röling , W. F. M. , Milner , M. G. , Martin , Jones D. , Fratepietro , E. , Swannell , R. P. J. , Daniel , F. and Head , I. M. 2004 . Bacterial Community Dynamics and Hydrocarbon Degradation during a Field-Scale Evaluation of Bioremediation on a Mudflat Beach Contaminated with Buried Oil . Appl. Environ. Microbiol. , 70 ( 5 ) : 2603 – 2613 .
  • Stach , J.E. and Burns , R.G. 2002 . Enrichment versus biofilm culture: a functional and phylogenetic comparison of polycyclic aromatic hydrocarbon-degrading microbial communities . Environ. Microbiol. , 4 ( 3 ) : 169 – 182 .
  • Van Gemerden , H. 1993 . Microbial mats: Ajoint of venture . Mar. Geol. , 113 : 3 – 25 .
  • Watts , J.E. , Wu , Q. , Schreier , S.B. , May , H.D. and Sowers , K.R. 2001 . Comparative analysis of polychlorinated biphenyl-dechlorinating communities in enrichment cultures using three different molecular screening techniques . Environ. Microbiol. , 3 ( 11 ) : 710 – 719 .
  • Wu , Q. , Watts , J.E. , Sowers , K.R. and May , H.D. 2002 . Identification of a bacterium that specifically catalyzes the reductive dechlorination of polychlorinated biphenyls with doubly flanked chlorines . Appl. Environ. Microbiol. , 68 ( 2 ) : 807 – 81 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.