Analysis of tomatoes showing iron deficiency symptoms in winter under heavy fruit load

References

• Bereczky, Z., H. Y. Wang, V. Schubert, M. Ganal, and P. Bauer. 2003. Differential regulation of nramp and irt metal transporter genes in wild type and iron uptake mutants of tomato. The Journal of Biological Chemistry 278 (27):24697–704. doi: 10.1074/jbc.M301365200.
   PubMed Web of Science ®Google Scholar
• Bolger, A. M., M. Lohse, and B. Usadel. 2014. Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics (Oxford, England) 30 (15):2114–20. doi: 10.1093/bioinformatics/btu170.
   PubMed Web of Science ®Google Scholar
• Briat, J. F., C. Duc, K. Ravet, and F. Gaymard. 2010. Ferritins and iron storage in plants. Biochimica et Biophysica Acta 1800 (8):806–14. doi: 10.1016/j.bbagen.2009.12.003.
   PubMed Web of Science ®Google Scholar
• Brumbarova, T., and P. Bauer. 2005. Iron-mediated control of the basic helix-loop-helix protein FER, a regulator of iron uptake in tomato. Plant Physiology 137 (3):1018–26. doi: 10.1104/pp.104.054270.
   PubMed Web of Science ®Google Scholar
• Chen, W. W., H. H. Zhu, J. Y. Wang, G. H. Han, R. N. Huang, Y. G. Hong, and J. L. Yang. 2021. Comparative physiological and transcriptomic analyses reveal altered fe-deficiency responses in tomato epimutant colorless non-ripening. Frontiers in Plant Science 12:796893. doi: 10.3389/fpls.2021.796893.
   PubMed Web of Science ®Google Scholar
• Colangelo, E. P., and M. L. Guerinot. 2004. The essential basic helix-loop-helix protein FIT1 is required for the iron deficiency response. The Plant Cell 16 (12):3400–12. doi: 10.1105/tpc.104.024315.
   PubMed Web of Science ®Google Scholar
• Dobin, A., C. A. Davis, F. Schlesinger, J. Drenkow, C. Zaleski, S. Jha, P. Batut, M. Chaisson, and T. R. Gingeras. 2013. STAR: Ultrafast universal RNA-seq aligner. Bioinformatics (Oxford, England) 29 (1):15–21. doi: 10.1093/bioinformatics/bts635.
   PubMed Web of Science ®Google Scholar
• Du, J., Z. Huang, B. Wang, H. Sun, C. Chen, H. Q. Ling, and H. Wu. 2015. SlbHLH068 interacts with FER to regulate the iron-deficiency response in tomato. Annals of Botany 116 (1):23–34. doi: 10.1093/aob/mcv058.
   PubMed Web of Science ®Google Scholar
• Eckhardt, U., A. Mas Marques, and T. J. Buckhout. 2001. Two iron-regulated cation transporters from tomato complement metal uptake-deficient yeast mutants. Plant Molecular Biology 45 (4):437–48. doi: 10.1023/a:1010620012803.
   PubMed Web of Science ®Google Scholar
• Ge, S. X., E. W. Son, and R. Yao. 2018. iDEP: An integrated web application for differential expression and pathway analysis of RNA-Seq data. BMC Bioinformatics 19 (1):534. doi: 10.1186/s12859-018-2486-6.
   PubMed Web of Science ®Google Scholar
• Gollhofer, J., R. Timofeev, P. Lan, W. Schmidt, and T. J. Buckhout. 2014. Vacuolar-iron-transporter1-like proteins mediate iron homeostasis in Arabidopsis. PloS One 9 (10):e110468. doi: 10.1371/journal.pone.0110468.
   PubMed Web of Science ®Google Scholar
• Guerinot, M. L., and Y. Yi. 1994. Iron: Nutritious, noxious, and not readily available. Plant Physiology 104 (3):815–20. doi: 10.1104/pp.104.3.815.
   PubMed Web of Science ®Google Scholar
• Ishimaru, Y., Y. Kakei, H. Shimo, K. Bashir, Y. Sato, Y. Sato, N. Uozumi, H. Nakanishi, and N. K. Nishizawa. 2011. A rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele. The Journal of Biological Chemistry 286 (28):24649–55. doi: 10.1074/jbc.M111.221168.
   PubMed Web of Science ®Google Scholar
• Jakoby, M., H. Y. Wang, W. Reidt, B. Weisshaar, and P. Bauer. 2004. FRU (BHLH029) is required for induction of iron mobilization genes in Arabidopsis thaliana. FEBS Letters 577 (3):528–34. doi: 10.1016/j.febslet.2004.10.062.
   PubMed Web of Science ®Google Scholar
• Kim, S. A., T. Punshon, A. Lanzirotti, L. Li, J. M. Alonso, J. R. Ecker, J. Kaplan, and M. L. Guerinot. 2006. Localization of iron in Arabidopsis seed requires the vacuolar membrane transporter VIT1. Science (New York, N.Y.) 314 (5803):1295–8. doi: 10.1126/science.1132563.
   PubMed Web of Science ®Google Scholar
• Kobayashi, T., and N. K. Nishizawa. 2012. Iron uptake, translocation, and regulation in higher plants. Annual Review of Plant Biology 63 (1):131–52. doi: 10.1146/annurev-arplant-042811-105522.
   PubMed Web of Science ®Google Scholar
• Lanquar, V., F. Lelièvre, S. Bolte, C. Hamès, C. Alcon, D. Neumann, G. Vansuyt, C. Curie, A. Schröder, U. Krämer, et al. 2005. Mobilization of vacuolar iron by AtNRAMP3 and AtNRAMP4 is essential for seed germination on low iron. The EMBO Journal 24 (23):4041–51. doi: 10.1038/sj.emboj.7600864.
   PubMed Web of Science ®Google Scholar
• Li, L., X. Cheng, and H. Q. Ling. 2004. Isolation and characterization of Fe(III)-chelate reductase gene LeFRO1 in tomato. Plant Molecular Biology 54 (1):125–36. doi: 10.1023/B:PLAN.0000028774.82782.16.
   PubMed Web of Science ®Google Scholar
• Ling, H. Q., P. Bauer, Z. Bereczky, B. Keller, and M. Ganal. 2002. The tomato fer gene encoding a bHLH protein controls iron-uptake responses in roots. Proceedings of the National Academy of Sciences of the United States of America 99 (21):13938–43. doi: 10.1073/pnas.212448699.
   PubMed Web of Science ®Google Scholar
• Marschner, H. 1995. Mineral nutrition of higher plants, 2nd ed. London Academic Press.
   Google Scholar
• Masuda, H., K. Usuda, T. Kobayashi, Y. Ishimaru, Y. Kakei, M. Takahashi, K. Higuchi, H. Nakanishi, S. Mori, and N. K. Nishizawa. 2009. Overexpression of the barley nicotianamine synthase gene HvNAS1 increases iron and zinc concentrations in rice grains. Rice 2 (4):155–66. doi: 10.1007/s12284-009-9031-1.
   Web of Science ®Google Scholar
• Matsuyama, T., H. Sasamoto, M. Nakazono, et al. 2008. The application of. tetsuriki-agri (and/or aqua) to the plants. In Proceedings of XIV International Symposium on Iron Nutrition and Interactions in Plants, 69.
   Google Scholar
• Paolacci, A. R., S. Celletti, G. Catarcione, M. J. Hawkesford, S. Astolfi, and M. Ciaffi. 2014. Iron deprivation results in a rapid but not sustained increase of the expression of genes involved in iron metabolism and sulfate uptake in tomato (Solanum lycopersicum L.) seedlings. Journal of Integrative Plant Biology 56 (1):88–100. doi: 10.1111/jipb.12110.
   PubMed Web of Science ®Google Scholar
• Pertea, M., G. M. Pertea, C. M. Antonescu, T. C. Chang, J. T. Mendell, and S. L. Salzberg. 2015. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads. Nature Biotechnology 33 (3):290–5. doi: 10.1038/nbt.3122.
   PubMed Web of Science ®Google Scholar
• Robinson, N. J., C. M. Procter, E. L. Connolly, and M. L. Guerinot. 1999. A ferric-chelate reductase for iron uptake from soils. Nature 397 (6721):694–7. doi: 10.1038/17800.
   PubMed Web of Science ®Google Scholar
• Sakamoto, Y., S. Watanabe, and K. Okano. No.15 pp.115-122 ref.24 Multishoot training in single-truss tomato cultivation. Bulletin of the National Research Institute of Vegetables, Ornamental Plants and Tea, 2000.
   Google Scholar
• Santi, S., and W. Schmidt. 2009. Dissecting iron deficiency-induced proton extrusion in Arabidopsis roots. The New Phytologist 183 (4):1072–84. doi: 10.1111/j.1469-8137.2009.02908.x.
   PubMed Web of Science ®Google Scholar
• Schwarz, B., and P. Bauer. 2020. FIT, a regulatory hub for iron deficiency and stress signaling in roots, and FIT-dependent and -independent gene signatures. Journal of Experimental Botany 71 (5):1694–705. doi: 10.1093/jxb/eraa012.
   PubMed Web of Science ®Google Scholar
• Suzuki, M., T. Matsuyama, and H. Kikuchi. 2018. Ferrous ion fertilizer to improve fe deficiency in plants caused by environmental stress. The Bulletin of Iron and Steel Institute of Japan 27 (9):627–31.
   Google Scholar
• Tamakoshi, K., and H. Inden. 2016. Effect of root mass on the growth and yield of long-term greenhouse tomato in a controlled environment. Shokubutsu Kankyo Kogaku 28 (2):104–12. doi: 10.2525/shita.28.104.
   Google Scholar
• Varotto, C., D. Maiwald, P. Pesaresi, P. Jahns, F. Salamini, and D. Leister. 2002. The metal ion transporter IRT1 is necessary for iron homeostasis and efficient photosynthesis in Arabidopsis thaliana. The Plant Journal: For Cell and Molecular Biology 31 (5):589–99. doi: 10.1046/j.1365-313x.2002.01381.x.
   PubMed Web of Science ®Google Scholar
• Vert, G., N. Grotz, F. Dédaldéchamp, F. Gaymard, M. L. Guerinot, J. F. Briat, and C. Curie. 2002. IRT1, an Arabidopsis transporter essential for iron uptake from the soil and for plant growth. The Plant Cell 14 (6):1223–33. doi: 10.1105/tpc.001388.
   PubMed Web of Science ®Google Scholar
• Wang, N., Y. Cui, Y. Liu, H. Fan, J. Du, Z. Huang, Y. Yuan, H. Wu, and H. Q. Ling. 2013. Requirement and functional redundancy of Ib subgroup bHLH proteins for iron deficiency responses and uptake in Arabidopsis thaliana. Molecular Plant 6 (2):503–13. doi: 10.1093/mp/sss089.
   PubMed Web of Science ®Google Scholar
• Yuan, Y. X., J. Zhang, D. W. Wang, and H. Q. Ling. 2005. AtbHLH29 of Arabidopsis thaliana is a functional ortholog of tomato FER involved in controlling iron acquisition in strategy I plants. Cell Research 15 (8):613–21. doi: 10.1038/sj.cr.7290331.
   PubMed Web of Science ®Google Scholar
• Yuan, Y., H. Wu, N. Wang, J. Li, W. Zhao, J. Du, D. Wang, and H. Q. Ling. 2008. FIT interacts with AtbHLH38 and AtbHLH39 in regulating iron uptake gene expression for iron homeostasis in Arabidopsis. Cell Research 18 (3):385–97. doi: 10.1038/cr.2008.26.
   PubMed Web of Science ®Google Scholar
• Zamboni, A., L. Zanin, N. Tomasi, M. Pezzotti, R. Pinton, Z. Varanini, and S. Cesco. 2012. Genome-wide microarray analysis of tomato roots showed defined responses to iron deficiency. BMC Genomics 13 (1):101. doi: 10.1186/1471-2164-13-101.
   PubMedGoogle Scholar
• Zhang, Y., Y. H. Xu, H. Y. Yi, and J. M. Gong. 2012. Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice. The Plant Journal: For Cell and Molecular Biology 72 (3):400–10. doi: 10.1111/j.1365-313X.2012.05088.x.
   PubMed Web of Science ®Google Scholar