REFERENCES
- Lander ES, Linton LM, Birren B, , et al. Initial sequencing and analysis of the human genome. Nature. 2001;409(6822):860–921. [INFOTRIEVE], [CSA]
- Venter JC, Adams MD, Myers EW, , et al. The sequence of the human genome. Science. 2001;291(5507):1304–1351. [INFOTRIEVE], [CSA], [CROSSREF]
- Southern E, Mir K, Shchepinov M. Molecular interactions on microarrays. Nat Genet. 1999;21(1 Suppl):5–9. [INFOTRIEVE], [CSA], [CROSSREF]
- Holloway AJ, van Laar RK, Tothill RW, Bowtell DD. Options available—from start to finish—for obtaining data from DNA microarrays II. Nat Genet. 2002;32(Suppl):481–489. [INFOTRIEVE], [CSA], [CROSSREF]
- Schena M, Heller RA, Theriault TP, Konrad K, Lachenmeier E, Davis RW. Microarrays: biotechnology's discovery platform for functional genomics. Trends Biotechnol. 1998;16:301–306. [INFOTRIEVE], [CSA], [CROSSREF]
- Barrett JC, Kawasaki ES. Microarrays: the use of oligonucleotides and cDNA for the analysis of gene expression. Drug Discov Today. 2003;8:134–141. [INFOTRIEVE], [CSA], [CROSSREF]
- Granjeaud S, Bertucci F, Jordan BR. Expression profiling: DNA arrays in many guises. Bioessays. 1999;21:781–790. [INFOTRIEVE], [CSA], [CROSSREF]
- Schena M, Shalon D, Davis RW, Brown PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science. 1995;270(5235):467–470. [INFOTRIEVE], [CSA]
- Cheung VG, Morley M, Aguilar F, Massimi A, Kucherlapati R, Childs G. Making and reading microarrays. Nat Genet. 1999;21 (1 Suppl):15–19. [INFOTRIEVE], [CSA], [CROSSREF]
- Duggan DJ, Bittner M, Chen Y, Meltzer P, Trent JM. Expression profiling using cDNA microarrays. Nat Genet. 1999;21(1 Suppl):10–14. [INFOTRIEVE], [CSA], [CROSSREF]
- Lipshutz RJ, Fodor SP, Gingeras TR, Lockhart DJ. High density synthetic oligonucleotide arrays. Nat Genet. 1999;21(1 Suppl):20–24. [INFOTRIEVE], [CSA], [CROSSREF]
- Fodor SP, Read JL, Pirrung MC, Stryer L, Lu AT, Solas D. Light-directed, spatially addressable parallel chemical synthesis. Science. 1991;251(4995):767–773. [INFOTRIEVE], [CSA]
- Hughes TR, Mao M, Jones AR, , et al. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat Biotechnol. 2001;19:342–347. [INFOTRIEVE], [CSA], [CROSSREF]
- Sendera TJ, Dorris D, Ramakrishnan R, Nguyen A, Trakas D, Mazumder A. Expression profiling with oligonucleotide arrays: technologies and applications for neurobiology. Neurochem Res. 2002;27:1005–1026. [INFOTRIEVE], [CSA], [CROSSREF]
- Mir KU, Southern EM. Sequence variation in genes and genomic DNA: methods for large-scale analysis. Annu Rev Genomics Hum Genet. 2000;1:329–360. [INFOTRIEVE], [CSA], [CROSSREF]
- Kruglyak L, Nickerson DA. Variation is the spice of life. Nat Genet. 2001;27:234–236. [INFOTRIEVE], [CSA], [CROSSREF]
- Negm RS, Verma M, Srivastava S. The promise of biomarkers in cancer screening and detection. Trends Mol Med. 2002;8:288–293. [INFOTRIEVE], [CSA], [CROSSREF]
- Kristensen VN, Kelefiotis D, Kristensen T, Borresen-Dale AL. High-throughput methods for detection of genetic variation. Biotechniques. 2001;30:318–322, 324, 326. [INFOTRIEVE], [CSA]
- Sachidanandam R, Weissman D, Schmidt SC, , et al. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature. 2001;409(6822):928–933. [INFOTRIEVE], [CSA], [CROSSREF]
- Wang DG, Fan JB, Siao CJ, , et al. Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science. 1998;280(5366):1077–1082. [INFOTRIEVE], [CSA], [CROSSREF]
- Warrington JA, Shah NA, Chen X, , et al. New developments in high-throughput resequencing and variation detection using high density microarrays. Hum Mutat. 2002;19:402–409. [INFOTRIEVE], [CSA], [CROSSREF]
- Pastinen T, Kurg A, Metspalu A, Peltonen L, Syvanen AC. Minisequencing: a specific tool for DNA analysis and diagnostics on oligonucleotide arrays. Genome Res. 1997;7:606–614. [INFOTRIEVE], [CSA]
- Pastinen T, Raitio M, Lindroos K, Tainola P, Peltonen L, Syvanen AC. A system for specific, high-throughput genotyping by allele-specific primer extension on microarrays. Genome Res. 2000;10:1031–1042. [INFOTRIEVE], [CSA], [CROSSREF]
- Fan JB, Chen X, Halushka MK, Berno A, Huang X, Ryder T , et al. Parallel genotyping of human SNPs using generic high-density oligonucleotide tag arrays. Genome Res. 2000;10:853–860. [INFOTRIEVE], [CSA], [CROSSREF]
- Hacia JG. Resequencing and mutational analysis using oligonucleotide microarrays. Nat Genet. 1999;21(1 Suppl):42–47. [INFOTRIEVE], [CSA], [CROSSREF]
- Hacia JG, Sun B, Hunt N, , et al. Strategies for mutational analysis of the large multiexon ATM gene using high-density oligonucleotide arrays. Genome Res. 1998;8:1245–1258. [INFOTRIEVE], [CSA]
- Ahrendt SA, Halachmi S, Chow JT, , et al. Rapid p53 sequence analysis in primary lung cancer using an oligonucleotide probe array. Proc Natl Acad Sci U S A. 1999;96:7382–7387. [INFOTRIEVE], [CSA], [CROSSREF]
- Nal B, Mohr E, Ferrier P. Location analysis of DNA-bound proteins at the whole-genome level: untangling transcriptional regulatory networks. Bioessays. 2001;23:473–476. [INFOTRIEVE], [CSA], [CROSSREF]
- Orlando V. Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation. Trends Biochem Sci. 2000;25:99–104. [INFOTRIEVE], [CSA], [CROSSREF]
- Kurdistani SK, Robyr D, Tavazoie S, Grunstein M. Genome-wide binding map of the histone deacetylase Rpd3 in yeast. Nat Genet. 2002;31:248–254. [INFOTRIEVE], [CSA], [CROSSREF]
- Iyer VR, Horak CE, Scafe CS, Botstein D, Snyder M, Brown PO. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature. 2001;409(6819):533–538. [INFOTRIEVE], [CSA], [CROSSREF]
- Weinmann AS, Farnham PJ. Identification of unknown target genes of human transcription factors using chromatin immunoprecipitation. Methods. 2002;26:37–47. [INFOTRIEVE], [CSA], [CROSSREF]
- Weinmann AS, Yan PS, Oberley MJ, Huang TH, Farnham PJ. Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis. Genes Dev. 2002;16:235–244. [INFOTRIEVE], [CSA], [CROSSREF]
- Kallioniemi A, Kallioniemi OP, Sudar D, , et al. Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science. 1992;258(5083):818–821. [INFOTRIEVE], [CSA]
- Solinas-Toldo S, Lampel S, Stilgenbauer S, , et al. Matrix-based comparative genomic hybridization: biochips to screen for genomic imbalances. Genes Chromosomes Cancer. 1997;20:399–407. [INFOTRIEVE], [CSA], [CROSSREF]
- Cai WW, Mao JH, Chow CW, Damani S, Balmain A, Bradley A. Genome-wide detection of chromosomal imbalances in tumors using BAC microarrays. Nat Biotechnol. 2002;20:393–396. [INFOTRIEVE], [CSA], [CROSSREF]
- Fiegler H, Carr P, Douglas EJ, , et al. DNA microarrays for comparative genomic hybridization based on DOP-PCR amplification of BAC and PAC clones. Genes Chromosomes Cancer. 2003;36:361–374. [INFOTRIEVE], [CSA], [CROSSREF]
- Pollack JR, Perou CM, Alizadeh AA, , et al. Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nat Genet. 1999;23:41–46. [INFOTRIEVE], [CSA], [CROSSREF]
- Antequera F, Bird A. Number of CpG islands and genes in human and mouse. Proc Natl Acad Sci U S A. 1993;90:11995–11999. [INFOTRIEVE], [CSA], [CROSSREF]
- Herman JG, Graff JR, Myohanen S, Nelkin BD, Baylin SB. Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands. Proc Natl Acad Sci U S A. 1996;93:9821–9826. [INFOTRIEVE], [CSA], [CROSSREF]
- Plass C. Cancer epigenomics. Hum Mol Genet. 2002;11:2479–2488. [INFOTRIEVE], [CSA], [CROSSREF]
- Adorjan P, Distler J, Lipscher E, , et al. Tumour class prediction and discovery by microarray-based DNA methylation analysis. Nucleic Acids Res. 2002;30: e21. [CSA], [CROSSREF]
- Yan PS, Chen CM, Shi H, , et al. Dissecting complex epigenetic alterations in breast cancer using CpG island microarrays. Cancer Res. 2001;61:8375–8380. [INFOTRIEVE], [CSA]
- Yan PS, Perry MR, Laux DE, Asare AL, Caldwell CW, Huang TH. CpG island arrays: an application toward deciphering epigenetic signatures of breast cancer. Clin Cancer Res. 2000;6:1432–1438. [INFOTRIEVE], [CSA]
- Gitan RS, Shi H, Chen CM, Yan PS, Huang TH. Methylation-specific oligonucleotide microarray: a new potential for high-throughput methylation analysis. Genome Res. 2002;12:158–164. [INFOTRIEVE], [CSA], [CROSSREF]
- Hatada I, Kato A, Morita S, , et al. A microarray-based method for detecting methylated loci. J Hum Genet. 2002;47:448–451. [INFOTRIEVE], [CSA], [CROSSREF]
- Frischmeyer PA, Dietz HC. Nonsense-mediated mRNA decay in health and disease. Hum Mol Genet. 1999;8:1893–1900. [INFOTRIEVE], [CSA], [CROSSREF]
- Noensie EN, Dietz HC. A strategy for disease gene identification through nonsense-mediated mRNA decay inhibition. Nat Biotechnol. 2001;19:434–439. [INFOTRIEVE], [CSA], [CROSSREF]
- Ionov Y, Nowak N, Perucho M, Markowitz S, Cowell JK. Manipulation of nonsense mediated decay identifies gene mutations in colon cancer cells with microsatellite instability. Oncogene. 2004;23:639–645. [INFOTRIEVE], [CSA], [CROSSREF]
- Blow JJ. Control of chromosomal DNA replication in the early Xenopus embryo. EMBO J. 2001;20:3293–3297. [INFOTRIEVE], [CSA], [CROSSREF]
- Jares P, Donaldson A, Blow JJ. The Cdc7/Dbf4 protein kinase: target of the S phase checkpoint? EMBO Rep. 2000;1:319–322. [INFOTRIEVE], [CSA]
- Raghuraman MK, Winzeler EA, Collingwood D, , et al. Replication dynamics of the yeast genome. Science. 2001;294(5540):115–121. [INFOTRIEVE], [CSA]
- Schubeler D, Scalzo D, Kooperberg C, van Steensel B, Delrow J, Groudine M. Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing. Nat Genet. 2002;32:438–442. [INFOTRIEVE], [CSA], [CROSSREF]
- Woodfine K, Fiegler H, Beare DM, , et al. Replication timing of the human genome. Hum Mol Genet. 2004;13:191–202. [INFOTRIEVE], [CSA], [CROSSREF]