19
Views
2
CrossRef citations to date
0
Altmetric
Research Article

Genetic variation observed at two tetrameric short tandem repeat loci on chromosome 12 (D12S66 and D12S67) among five distinct ethnic groups of India: detection of two new alleles

, &
Pages 513-525 | Published online: 09 Jul 2009

  • BANERJEE, S., ROY, M., DEY, B., MUKHERJEE, B. N.; and BHATTACHARJEE, S. K., 1988, Genetic polymorphism of red cell antigen, enzyme, haemoglobin and serum protein in fifteen endogamous groups of south India. Journal of Indian Anthropological Society, 23, 250-262.
  • BOTSTEIN, D., WHITE, R. L., SKOLNICK, M., and DAVIS, R. W., 1980, Construction of a genetic linkage map in man using restriction length polymorphism. American Journal of Human Genetics, 32, 314331.
  • CAVALLI-SFORZA, L. L., MENOZZI, P., and PIAZZA, A., 1994, The History and Geography of Human Genes (Princeton, NJ: Princeton University Press).
  • CAVALLI-SFORZA, L. L., 1998, The DNA revolution in population genetics. Trends in Genetics, 14, 60-65.
  • CHATTOPADHYAY, P., CLEEF, S., DUELMER, M., HENKE, L., and HENKE, J., 2000, Human autosomal short tandem repeat types in Jat Sikhs from North India. Forensic Science International, 113, 29-32.
  • CHATTOPADHYAY, P., DUTTA, R., and KASHYAP, V. K.,2001, Population data for nine fluorescent based STR loci among four important tribal population of India. Journal of Forensic Sciences, 46, 184188.
  • CHATTOPADHYAY, P., and KASHYAP, V. K., 2001, Distribution of alleles of three tetrameric STR loci HUMHPRTB, HUMF13B, HUMLPL, and other six PCR based loci HLADQAl, LDLR, GYPA, HBGG, D7S8, Gc in eight predominant populations of India. Forensic Science International, 119, 134-137.
  • DAS, K., MALHOTRA, K. C., MUKHERJEE, B. N., WALTER, H., MAJUMDAR, P. P., and PAPIHA, S. S., 1996, Population structure and genetic differentiation among sixteen tribal populations of Central India. Human Biology, 68, 679-705.
  • DEKA, R., SHRIVER, M. D., Yu, L. M., FERREL, R. E., and CHAKRABORTY, R., 1995, intra- and interpopulation diversity at short tandem repeat loci in diverse populations of the world. Electrophoresis, 16, 1659-1664.
  • DEKA, R., SHRIVER, M. D., Yu, L. M., HEIDREICH, E. M., JIN, L., ZHONG, Y., MCGARVEY, S. T., AGARWAL, S. S., BUNKER, C. H., MIKI, T., HUNDRIESER, J., YIN, S-J., RASKIN, S., BARRANTES, R., FERREL, R. E., and CHAKRABORTY, R., 1999, Genetic variation at twenty-three microsatellite loci in sixteen human populations. Journal of Genetics, 78, 99-121.
  • DUTTA, R., CHATTOPADHYAY, P., and KASHYAP, V. K., 2000, STR data for AMPFlSTR profiler plus loci among four predominant populations of eastern India. Journal of Forensic Science, 45, 13531357.
  • DUTTA, R., and KASHYAP, V. K., 2000, Allele frequency of six STR loci among three predominant population groups of Eastern India. Forensic Science International, 297, 1-2.
  • DUTTA, R., and KASHYAP, V. K., 2001, Genetic variation observed at three tetrameric short tandem repeat loci HUM THOl, TPOX, CSFlPO in five ethnic population groups of Northeastern India. American Journal of Human Biology, 13, 23-29.
  • EDWARDS, A., CIVITELLO, A., HAMMOND, H. A., and CASKEY, C. T., 1991a, DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. American Journal of Human Genetics, 49, 746-756.
  • EDWARDS, A., HAMMOND, H. A., CHAKRABORTY, R., and CASKEY, C. T., I991b, DNA typing with trimeric and tetrameric tandem repeats: polymorphic loci, detection system, and population genetics. In Proceedings from the Second International Symposium on Human Identification, Madision, WI, Promega Corporation, pp. 31-52.
  • FALCONE, E., SPADAFORA, P., DE LUCA, M., RUFFOLO, R., BRANCATI, C., and DE BENEDICTIS, G., 1995, DYS19, D12S67 and D1S80 polymorphisms in population samples from Southern Italy and Greece. Human Biology, 67, 689-701.
  • FISHER, R., 1951, Standard calculations for evaluating a blood group system. Heredity, S, 95-102.
  • FULLER, C. L., 1975, The Nairs Today, edited by J. Goody (Cambridge University Press, Cambridge), pp. 1-172.
  • GOMOLKA, M., HUNDRIESER, J., NURNBERG, P., ROEWER, L., EPPLEN, J. T.; and EPPLEN, C., 1994, Selected di- and tetranucleotide microsatellites from chromosome 7, 12, 14, and Y in various Eurasian populations. Human Genetics, 3, 592-596.
  • Guo, S. W., and THOMPSON, E. A., 1992, Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics, 48, 361-372.
  • HAWI, Z. H., MASTANA, S. S., and PAPIHA, S. S., 1995, Restriction fragment length polymorphism of HLA-DR and HLA-DQ allotypes in four endogamous groups of Western India. Human Biology, 68, 739-754.
  • LAHIRI, K., and NURNBERGER, J. I., JR, 1991, A rapid non-enzymatic method for the preparation of HMW DNA from blood for RFLP studies. Nucleic Acids Research, 19, 5444.
  • LINNS, A. M., SPRECHER, C. J., PUERS, C., and SCHUUM, J. W., 1995, Multiplex sets for the amplification of polymorphic short tandem repeat loci-silver stain and fluorescence detection. Biotechniques, 20, 882-888.
  • MAJUMDAR, P. P., 1993, People of India: biological diversity and affinities. Evolutionary Anthropology, 6, 100-110.
  • MALHOTRA, K. C. 1934. Population structure among the Dhanger caste-cluster of Maharashtra, India. In The People of South Asia, edited by J. R. Lukas (New York: Plenum), pp. 295.
  • MEENAKSHI, K., 1995, In Recent Perspectives of Early Indian History, edited by R. Thappar (Mumbai: Popular Prakashan), pp. 1-52.
  • MINAGUCHI, K., 1997, D12S67, a bipartite locus: differential amplification of parts of the nucleotide sequence reveals considerable polymorphism. Electrophoresis, 18, 1923-1927.
  • MINAGUCHI, A., and HAGA, T., 2000, Polymorphism of the D12S66 system in the Japanese population and its detection using degraded DNA. Bulletin of Tokyo Dental College, 41,15-20.
  • MITCHELL, R. J., FEDERLE, L., SOFRO, A. S. M., PAPIHA, S. S., BRICENO, l., and BERNAL, J. E., 2000, Further data on the microsatellite locus D12S67 in Worldwide populations: an unusual distribution of D12S67 alleles in Native Americans. Human Biology, 72, 697-705.
  • MUKHERIEE, N., MAJUMDAR, P. P., ROY, B., ROY, M., DEY, B., CHAKRABORTY, M., and BANERJEE, S., 1999, Variation at 4 short tandem repeat loci in 8 population groups of India. Human Biology, 71, 439-446.
  • NEI, M., 1973, Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences. USA, 70, 3321-3323.
  • NEI, M., 1978, Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583-590.
  • OTA, T., 1993, DISPAN: Genetic Distance and Phylogenetic Analysis (University Park, Pennsylvania: Tatsuya Ota and Pennsylvania State University).
  • PANNEERCHELVAN, S., VANAJA, N., BASKAR, D., SIVAPRIYA, V., and DAMODARAN, C., 2001a, Distribution of alleles of 12 STR loci in Tamil population (South India). Forensic Sciences International, 119, 126-128.
  • PANNEERCHELVAN, S., GUNACHANDRAN, N., VANAJA, N., BACHANDRAN, R., SIVAPRIYA, V., BASKAR, D., NALINA, K., RAJMOHAN, S., and DAMODARAN, C., 2001b, Gene frequencies of 12 STR loci in an endogamous Badaga population (South India). Journal of Forensic Sciences, 46, 994-995.
  • PAPIHA S. S., 1996, Human Biology: Special Issue on the Level of Genetic Differentiation in Populations of the Indian Subcontinent, edited by S. S. Papiha, vol. 68 (Detroit, Michigan: Wayne State University Press), pp. 601-845.
  • PAPIHA, S. S., MASTANA, S. S., PURANDARE, C. A., JAYASEKHARA, R., and CHAKRABORTY, R., 1995, Population study of three VNTR loci (D2S44, D7S22, D12S11) in five ethnically defined population of the Indian sub-continent Human Biology, 68, 819-855.
  • PEREZ-LAZAUN, A., CALLAFELL, F., MATEU, E., OMAS, D., BOSCH, E.; and BERTRANPETIT, J., 1997, Allele frequencies for 20 microsatellites in a Worldwide population Survey. Human Heredity, 47, 189-196.
  • REDDY, B. M., SUN, G., LUIS, J. R., CRAWFORD, M. H., HEMAM, N. S.; and DEKA, R., 2001a, Genomic diversity at thirteen short tandem repeat loci in a sub-structured caste population, Golla, Southern Andhra Pradesh, India. Human Biology, 73, 175 -190.
  • REDDY, B. M., SUN, G., RANJAN, D., and DEKA, R., 2001b, STR data for the AmpF1STR profiler plus loci among Golla populations of Southern Andhra Pradesh. Journal of Forensic Sciences, 46, 734735.
  • ROEWER, L., ARNEMANN, J., SPURR, N. K., GRZESCHIK, K. H.; and EPPLEN, J. T., 1992, Simple repeat sequences on the human Y chromosome are equally polymorphic as their autosomal counterparts. Human Genetics, 89, 389-394.
  • ROEWER, L., NAGY, M., SCHMIDT, P., EPPLEN, J. T.; and HERZOG-SCHRODER, G., 1993, Microsatellite and HLA class II oligonucleotide typing in a population of Yanomami Indians. In DNA fingerprinting: State of the Science, edited by S. D. J. Pena, R. Chakraborty, J. T. Epplen and Alec Jeffereys (Basel, Switzerland: Birkhauser Verlag), pp. 222-230.
  • SAHA, N., KIRK, R. L., SHANBHAG, S., JOSHI, S. R., and BHATIA, H. M., 1975, Population genetic studies in Kerala and the Nilgiris (South West India). Human Heredity, 26, 175-197.
  • SANGHVI, L. D., 1954 Genetic diversity in the people of Western India. Eugenics Quarterly, 1, 235-239.
  • SANGHVI, L. D., and KHANOLKAR, V.R., 1949, Data relating to seven genetical characters in six endogamous groups in Bombay. Annals of Eugenics, 16, 52-76.
  • SCHNEIDER, S., KUEFFER, J. M., ROESSELI, D., and EXCOFFIER, L., 1999, ARLEQUIN version 1.1: a software for population genetic data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland.
  • SINGH, K. S., I998a, The Ezhavas. In People of India: India's Communities, V, edited by K. S. Singh (New Delhi: Oxford University Press), pp. 1318-21.
  • SINGH, K. S., 1998b, The Muslims. In People of India: India's Communities, VI, edited by K. S. Singh (New Delhi: Oxford University Press), pp. 2407-2425.
  • SINGH, K. S., 1998c, The Nairs. In People of India: India's Communities, VI, edited by K. S. Singh (New Delhi: Oxford University Press), pp. 2621-2624.
  • SLATKIN, M., and EXCOFFIER, L, 1995, Testing for linkage disequilibrium in genotypic data using the EM algorithm. Heredity, 76, 377-383.
  • WATSON, E. C., GILL, P., and MASTANA, S. S., 1998, Genetic diversity at the HUMTH01 locus. Annals of Human Biology, 25, 563-580.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.