COL1A2 (type I collagen) polymorphisms in the Colorado Indians of Ecuador

References

• Barbujani G, Goldstein DB. Africans and Asians abroad: Genetic diversity in Europe. Annu Rev Genomics Hum Genet 2004; 5: 119–150
   PubMed Web of Science ®Google Scholar
• Barriga López F. Cayapas o Chachis. Etnologia ecuatoriana. Graficas Duque, Quito 1987; 4, Instituto Ecuatoriano de Credito Educativo y Becas
   Google Scholar
• Bolnick DA, Shook BA, Campbell L, Goddard I. Problematic use of Greenberg's linguistic classification of the Americas in studies of Native American genetic variation. Am J Hum Genet 2004; 75: 519–522
   PubMedGoogle Scholar
• Bortolini MC, Baptista C, Callegari-Jacques SM, Weimer TA, Salzano FM. Diversity in protein, nuclear DNA and mtDNA in South Amerinds—agreement or discrepancy?. Ann Hum Genet 1998; 62: 133–145
   PubMedGoogle Scholar
• Carrasco E. El pueblo Chachi. El jeengume avanza. Ediciones Abya-Yala, Quito 1988
   Google Scholar
• Cavalli-Sforza LL, Edwards AWF. Phylogenetic analysis: Models and estimation procedures. Evolution 1967; 32: 550–570
   Web of Science ®Google Scholar
• De Stefano GF, Martínez-Labarga C, Casalotti R, Tartaglia M, Novelletto A, Pepe G, Rickards O. Analysis of three RFLPs of the COL1A2 (type I collagen) in the Amhara and Oromo of Ethiopia. Ann Hum Biol 2002; 29: 432–441
   PubMed Web of Science ®Google Scholar
• De Wet W, Bernard M, Benson-Chanda V, Chu ML, Dickson L, Weil D, Ramirez F. Organization of the human pro-2 (I) collagen gene. J Biol Chem 1987; 262: 16032–16036
   PubMed Web of Science ®Google Scholar
• Excoffier L, Slatkin M. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol Biol Evol 1995; 12: 921–927
   PubMed Web of Science ®Google Scholar
• Excoffier L, Smouse P, Quattro J. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics 1992; 131: 479–491
   PubMed Web of Science ®Google Scholar
• Felsenstein J. PHYLIP (Phylogeny Inference Package), Vesion 3.5c. Department of Genetics, University of Washington, Seattle, Washington 1993
   Google Scholar
• Greenberg JH. Language in the Americas. Stanford University Press, Stanford, California 1987
   Google Scholar
• Loukotka C. Classification of South American Indian languages. University of California, Los Angeles 1968
   Google Scholar
• Martinez-Labarga C, Rickards O, Scacchi R, Corbo RM, Biondi G, Peña JA, Varas de Vieira C, Guevara AEB, Mesa Santurino MS, De Stefano GF. Genetic population structure of two African–Ecuadorian communities of Esmeraldas. Am J Phys Anthropol 1999; 109: 159–174
   PubMedGoogle Scholar
• Matson GA, Sutton HE, Swanson J, Robinson AR, Santiana A. Distribution of heredity blood group among Indians of South America. I. Ecuador. Am J Phys Anthropol 1966; 24: 51–70
   PubMedGoogle Scholar
• Miller SA, Dykes KK, Polesky HF. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 1988; 16: 1215
   PubMed Web of Science ®Google Scholar
• Pepe G, Muglia M, Brancati C, Modiano G. Studies of four restriction fragment length polymorphisms of the type I collagen genes in two Italian populations. Hum Hered 1990; 40: 368–380
   PubMed Web of Science ®Google Scholar
• Pepe G, Buè C, Orlandi P, Ena F, Meloni T, Modiano G. COL1A2 gene (α2 gene of type I collagen) at the haplotype level as a new valuable anthropogenetic marker: A study on Sardinians. Hum Biol 1994a; 66: 613–623
   PubMedGoogle Scholar
• Pepe G, Rickards O, Bué C, Martínez-Labarga C, Tartaglia M, De Stefano GF. EcoRI, RsaI, and MspI RFLPs of the COL1A2 Gene (Type I Collagen) in the Cayapa, a Native American population of Ecuador. Hum Biol 1994b; 66: 979–989
   PubMedGoogle Scholar
• Pepe G, Rickards O, Jodice C, Modiano G. Allele and haplotype frequency distribution of theEcoRI,RsaI,MspI COL1A2 RFLPs among various human populations. Hum Biol 1995; 67: 905–920
   PubMed Web of Science ®Google Scholar
• Retief E, Parker MI, Retief AE. Regional chromosome mapping of human collagen genes alpha 2(1) and alpha I(1) (COL1A2 and COL1A1). Hum Genet 1985; 69: 304–308
   PubMed Web of Science ®Google Scholar
• Reynolds J, Weir BS, Cockerham CC. Estimation of the coancestry coefficient: Basis for a short-term genetic distance. Genetics 1983; 105: 767–779
   PubMed Web of Science ®Google Scholar
• Richards M, Macaulay V, Hickey E, Vega E, Sykes B, Guida V, Rengo C, Sellitto D, Cruciani F, Kivisild T, et al. Tracing European founder lineages in the Near Eastern mtDNA pool. Am J Hum Genet 2000; 67: 1251–1276
   PubMed Web of Science ®Google Scholar
• Rickards O, Tartaglia M, Martínez-Labarga C, De Stefano GF. Genetic characterization of the Cayapa Indians of Ecuador, and their genetic relationships with the other Native American populations. Hum Biol 1994; 66: 299–322
   PubMedGoogle Scholar
• Rickards O, Martínez-Labarga C, Lum JK, De Stefano GF, Cann RL. Mitochondrial DNA history of the Cayapa Amerinds of Ecuador: Detection of additional founding lineages for Native American populations. Am J Hum Genet 1999; 65: 519–530
   PubMed Web of Science ®Google Scholar
• Rickards O, Martínez-Labarga C, Trucchi E, Renzi F, Casalotti R, Biondi G, Pepe G, De Stefano GF. Restriction fragment length polymorphisms of the type I collagen locus 2 (COL1A2) in two communities of African ancestry and other mixed populations of northwestern Ecuador. Hum Biol 2005; 77: 115–123
   PubMed Web of Science ®Google Scholar
• Scacchi R, Corbo RM, Rickards O, De Stefano GF. The Cayapa Indians of Ecuador: A population study of seven protein genetic polymorphisms. Ann Hum Biol 1994; 21: 67–77
   PubMed Web of Science ®Google Scholar
• Schneider S, Roessli D, Excoffier L. Arlequin ver 2.000: A software for population genetic data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland 2000
   Google Scholar
• StatSoft Inc. STATISTICA for Windows (computer program manual). Tulsa. StatSoft Inc, Oklahoma 1995
   Google Scholar
• Stephens M, Donnelly P. A comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet 2003; 73: 1162–1169
   PubMed Web of Science ®Google Scholar
• Stephens M, Smith N, Donnelly P. A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 2001; 68: 978–989
   PubMed Web of Science ®Google Scholar
• Tarazona-Santos E, Carvalho-Silva DR, Pettener D, Luiselli D, De Stefano GF, Martínez-Labarga C, Rickards O, Tyler-Smith C, Pena SDJ, Santos FR. Genetic differentiation in South Amerindians is related to environmental and cultural diversity: Evidence from the Y chromosome. Am J Hum Genet 2001; 68: 1485–1496
   PubMed Web of Science ®Google Scholar