Phylogeographical patterns in the northwestern European moss Scorpidium revolvens (Sw. ex Anonymo) Rubers (Scorpidiaceae, Bryophyta)

References

• Bączkiewicz A, Szczecińska M, Sawicki J, Stebel A, Buczkowska K. 2017. DNA barcoding, ecology and geography of the cryptic species of Aneura pinguis and their relationships with Aneura maxima and Aneura mirabilis (Metzgeriales, Marchantiophyta). PLOS One. 12(12):e0188837. https://doi.org/10.1371/journal.pone.0188837.
   PubMed Web of Science ®Google Scholar
• Bennike O, Colgan W, Hedenäs L, Heiri O, Lemdahl G, Wiberg-Larsen P, Ribeiro S, Pronzato R, Manconi R, Bjørk AA. 2022. An Early Pleistocene interglacial deposit at Pingorsuit, North-West Greenland. Boreas. 52(1):27–41. https://doi.org/10.1111/bor.12596.
   Web of Science ®Google Scholar
• Borgen L, Hultgård UM. 2003. Parnassia palustris: a genetically diverse species in Scandinavia. Botanical Journal of the Linnean Society. 142(4):347–372. https://doi.org/10.1046/j.1095-8339.2003.00186.x.
   Web of Science ®Google Scholar
• Clement M, Posada D, Crandall KA. 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology. 9(10):1657–1659. https://doi.org/10.1046/j.1365-294x.2000.01020.x.
   PubMed Web of Science ®Google Scholar
• Eriksson G, Andersson S, Eiche V, Ifver J, Persson A. 1980. Severity index and transfer effects on survival and volume production of Pinus sylvestris in northern Sweden. Studia Forestalia Suecica. 156:1–32. https://pub.epsilon.slu.se/5442/1/SFS156.pdf.
   Google Scholar
• Excoffier L, Lischer HEL. 2010. Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources. 10(3):564–567. https://doi.org/10.1111/j.1755-0998.2010.02847.x.
   PubMed Web of Science ®Google Scholar
• Feliner GN, Rosselló JA. 2007. Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants. Molecular Phylogenetics and Evolution. 44(2):911–919. https://doi.org/10.1016/j.ympev.2007.01.013.
   PubMed Web of Science ®Google Scholar
• Frankham R. 1996. Relationship of genetic variation to population size in wildlife. Conservation Biology. 10(6):1500–1508. https://doi.org/10.1046/j.1523-1739.1996.10061500.x. https://jstor.org/stable/2387021.
   Web of Science ®Google Scholar
• Fu Y. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics. 147(2):915–925. https://doi.org/10.1093/genetics/147.2.915.
   PubMed Web of Science ®Google Scholar
• Goloboff P, Farris J, Nixon K. 2003. Tree analysis using new technology. [accessed 2017 May 3]. http://www.lillo.org.ar/phylogeny/tnt/.
   Google Scholar
• Graham J, Farr G, Hedenäs L, Devez A, Watts MJ. 2019. Using water chemistry to define ecological preferences within the moss genus Scorpidium, from Wales, UK. Journal of Bryology. 41(3):197–204. https://doi.org/10.1080/03736687.2019.1603416.
   Web of Science ®Google Scholar
• Hedenäs L. 1989. The genera Scorpidium and Hamatocaulis, gen. nov., in Northern Europe. Lindbergia. 15(1):8–36.
   Web of Science ®Google Scholar
• Hedenäs L. 2003a. Amblystegiaceae (Musci). Flora Neotropica Monograph. 89:i–iv, 1–107.
   Google Scholar
• Hedenäs L. 2003b. The European species of the Calliergon–Scorpidium–Drepanocladus complex, including some related or similar species. Meylania. 28:1–116. https://www.bryolich.ch/pdfs/Meylania_ganze_Hefte/Meylania%2028.pdf.
   Google Scholar
• Hedenäs L. 2009. Relationships among Arctic and non-Arctic haplotypes of the moss species Scorpidium cossonii and Scorpidium scorpioides (Calliergonaceae). Plant Systematics and Evolution. 277:217–231. https://doi.org/10.1007/s00606-008-0131-y.
   Web of Science ®Google Scholar
• Hedenäs L. 2014. Intraspecific genetic variation in selected mosses of Scandinavian interglacial refugia suggests contrasting distribution history patterns. Botanical Journal of the Linnean Society. 176(3):295–310. https://doi.org/10.1111/boj.12210.
   Web of Science ®Google Scholar
• Hedenäs L. 2015. Rhytidium rugosum (Bryophyta) colonized Scandinavia from at least two glacial refugial source populations. Botanical Journal of the Linnean Society. 179(4):635–657. https://doi.org/10.1111/boj.12341.
   Web of Science ®Google Scholar
• Hedenäs L. 2019. On the frequency of northern and mountain genetic variants of widespread species: essential biodiversity information in a warmer world. Botanical Journal of the Linnean Society. 191(4):440–474. https://doi.org/10.1093/botlinnean/boz061.
   Web of Science ®Google Scholar
• Hedenäs L. 2021. Relationships within Timmia, especially within T. austriaca Hedw. (Musci, Timmiaceae). Journal of Bryology. 43(3):283–291. https://doi.org/10.1080/03736687.2021.1963914.
   Web of Science ®Google Scholar
• Hedenäs L. 2022. Potentially misleading phylogenetic signal and its explanation in single species studies – contrasting Loeskypnum badium, Sarmentypnum exannulatum and Warnstorfia fluitans. The Bryologist. 125(1):102–114. https://doi.org/10.1639/0007-2745-125.1.102.
   Web of Science ®Google Scholar
• Hedenäs L, Bennike O. 2008. A Plio-Pleistocene moss assemblage from Store Koldewey, NE Greenland. Lindbergia. 33(1):23–37. https://www.jstor.org/stable/27809535.
   Google Scholar
• Hedenäs L, Bisang I. 2019. Are the remains of the Central European population of Drepanocladus turgescens genetically distinct from Scandinavian populations? Herzogia. 32(1):209–218. https://doi.org/10.13158/heia.32.1.2019.209.
   Web of Science ®Google Scholar
• Hedenäs L, Collart F, Heras P, Infante M, Kooijman A, Kučera J. 2022. Distributions and habitats of the two partly allopatric cryptic species of the vulnerable moss Hamatocaulis vernicosus (Bryophyta) in Europe. Botanical Journal of the Linnean Society. 200(2):233–254. https://doi.org/10.1093/botlinnean/boac011.
   Web of Science ®Google Scholar
• Hedenäs L, Eldenäs P. 2007. Cryptic speciation, habitat differentiation, and geography in Hamatocaulis vernicosus (Calliergonaceae, Bryophyta). Plant Systematics and Evolution. 268:131–145. https://doi.org/10.1007/s00606-007-0529-y.
   Web of Science ®Google Scholar
• Hedenäs L, Eldenäs P. 2008. Relationships in Scorpidium (Calliergonaceae, Bryophyta), especially between S. cossonii and S. scorpioides. Taxon. 57(1):121–130. https://www.jstor.org/stable/25065953.
   Web of Science ®Google Scholar
• Hedenäs L, Heinrichs J, Gallego MT. 2019. The Scandinavian Syntrichia ruralis complex (Musci, Pottiaceae): a chaos of diversification. Plant Systematics and Evolution. 305:639–661. https://doi.org/10.1007/s00606-019-01596-0.
   Web of Science ®Google Scholar
• Hedenäs L, Larsson P, Cronholm B, Bisang I. 2021. Evidence of horizontal gene transfer between land plant plastids has surprising conservation implications. Annals of Botany. 127(7):903–908. https://doi.org/10.1093/aob/mcab021.
   PubMed Web of Science ®Google Scholar
• Huson DH, Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution. 23(2):254–267. https://doi.org/10.1093/molbev/msj030.
   PubMed Web of Science ®Google Scholar
• Hutcheson K. 1970. A test for comparing diversities based on the Shannon formula. Journal of Theoretical Biology. 29(1):151–154. https://doi.org/10.1016/0022-5193(70)90124-4.
   PubMed Web of Science ®Google Scholar
• Kolari THM, Korpelainen P, Kumpula T, Tahvanainen T. 2021. Accelerated vegetation succession but no hydrological change in a boreal fen during 20 years of recent climate change. Ecology and Evolution. 11(12):7602–7621. https://doi.org/10.1002/ece3.7592.
   PubMed Web of Science ®Google Scholar
• Kooijman AM. 2012. ‘Poor rich fen mosses’: atmospheric N-deposition and P-eutrophication in base-rich fens. Lindbergia. 35:42–52. https://www.jstor.org/stable/lindbergia.35.42.
   Google Scholar
• Kooijman AM, Hedenäs L. 1991. Differentiation in habitat requirements within the genus Scorpidium, especially between S. revolvens and S. cossonii. Journal of Bryology. 16(4):619–627. https://doi.org/10.1179/jbr.1991.16.4.619.
   Web of Science ®Google Scholar
• Košnar J, Herbstová M, Kolář F, Koutecký P, Kučera J. 2012. A case study of intragenomic ITS variation in bryophytes: assessment of gene flow and role of polyploidy in the origin of European taxa of the Tortula muralis (Musci: Pottiaceae) complex. Taxon. 61(4):709–720. https://doi.org/10.1002/tax.614001.
   Web of Science ®Google Scholar
• Kučera J, Kuznetsova OI, Manukjanová A, Ignatov MS. 2019. A phylogenetic revision of the genus Hypnum: towards completion. Taxon. 68(4):628–660. https://doi.org/10.1002/tax.12095.
   Web of Science ®Google Scholar
• Leimu R, Mutikainen P, Koricheva J, Fischer M. 2006. How general are positive relationships between plant population size, fitness and genetic variation? Journal of Ecology. 94(5):942–952. https://doi.org/10.1111/j.1365-2745.2006.01150.x.
   Web of Science ®Google Scholar
• Manukjanová A, Košnar J, Kučera J. 2020. Genetic variation in two cryptic species of the rare fen moss Hamatocaulis vernicosus in the Czech Republic. Preslia. 92(1):57–72. https://doi.org/10.23855/preslia.2020.057.
   Google Scholar
• Meleshko O, Martin MD, Korneliussen TS, Schröck C, Lamkowski P, Schmutz J, Healey A, Piatkowski BT, Shaw AJ, Weston DJ, et al. 2021. Extensive genome-wide phylogenetic discordance is due to incomplete lineage sorting and not ongoing introgression in a rapidly radiated bryophyte genus. Molecular Biology and Evolution. 38(7):2750–2766. https://doi.org/10.1093/molbev/msab063.
   PubMed Web of Science ®Google Scholar
• Mikulášková E, Veleba A, Šmerda J, Knoll A, Hájek M. 2017. Microsatellite variation in three calcium-tolerant species of peat moss detected specific genotypes of Sphagnum warnstorfii on magnesium-rich bedrock. Preslia. 89(2):101–114. https://doi.org/10.23855/preslia.2017.101.
   Web of Science ®Google Scholar
• Müller K. 2005. SeqState. Applied Bioinformatics. 4:65–69. https://doi.org/10.2165/00822942-200504010-00008.
   PubMedGoogle Scholar
• Natcheva R, Cronberg N. 2007. Recombination and introgression of nuclear and chloroplast genomes between the peat mosses, Sphagnum capillifolium and Sphagnum quinquefarium. Molecular Ecology. 16(4):811–818. https://doi.org/10.1111/j.1365-294X.2006.03163.x.
   PubMed Web of Science ®Google Scholar
• Naturvårdsverket. 2007. Myllrande våtmarker. Underlagsrapport till fördjupad utvärdering av miljömålsarbetet. Naturvårdsverket Rapport. 5771:1–132.
   Google Scholar
• Naturvårdsverket. 2022. Bara naturlig försurning. Fördjupad utvärdering av miljömålen 2023. Naturvårdsverket Rapport. 7069:1–73.
   Google Scholar
• Peakall R, Smouse PE. 2006. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes. 6(1):288–295. https://doi.org/10.1111/j.1471-8286.2005.01155.x.
   Web of Science ®Google Scholar
• Peakall R, Smouse PE. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research – an update. Bioinformatics. 28(19):2537–2539. https://doi.org/10.1093/bioinformatics/bts460.
   PubMed Web of Science ®Google Scholar
• Ramírez-Soriano A, Ramos-Onsins SE, Rozas J, Calafell F, Navarro A. 2008. Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination. Genetics. 179(1):555–567. https://doi.org/10.1534/genetics.107.083006.
   PubMed Web of Science ®Google Scholar
• Schlesak S, Hedenäs L, Nebel M, Quandt D. 2018. Cleaning a taxonomic dustbin: placing the European Hypnum species in a phylogenetic context! Bryophyte Diversity and Evolution. 40(2):37–54. https://doi.org/10.11646/bde.40.2.3.
   Google Scholar
• Shaw AJ, McDaniel SF, Werner O, Ros RM. 2002. New frontiers in bryology and lichenology. Phylogeography and phylodemography. The Bryologist. 105(3):373–383. https://doi.org/10.1639/0007-2745(2002)105[0373:PAP]2.0.CO;2.
   Web of Science ®Google Scholar
• Simmons MP, Ochoterena H. 2000. Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology. 49(2):369–381. https://doi.org/10.1093/sysbio/49.2.369.
   PubMed Web of Science ®Google Scholar
• Skrede I, Eidensen PB, Portela RP, Brochmann C. 2006. Refugia, differentiation and postglacial migration in arctic-alpine Eurasia, exemplified by the mountain avens (Dryas octopetala L.). Molecular Ecology. 15(7):1827–1840. https://doi.org/10.1111/j.1365-294X.2006.02908.x.
   PubMed Web of Science ®Google Scholar
• Stenøien HK, Shaw AJ, Shaw B, Hassel K, Gunnarsson U. 2010. North American origin and recent European establishments of the Amphi-Atlantic peat moss Sphagnum angermanicum. Evolution. 65(4):1181–1194. https://doi.org/10.1111/j.1558-5646.2010.01191.x.
   PubMed Web of Science ®Google Scholar
• Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123(3):585–595. https://doi.org/10.1093/genetics/123.3.585.
   PubMed Web of Science ®Google Scholar
• Tyler T. 2002. Large-scale geographic patterns of genetic variation in Melica nutans, a widespread Eurasian woodland grass. Plant Systematics and Evolution. 236:73–87. https://doi.org/10.1007/s00606-002-0235-8.
   Web of Science ®Google Scholar