Entrainment of the Neurospora Circadian Clock

References

• Aronson B. D., Johnson K. A., Dunlap J. C. The circadian clock locus frequency: a single ORF defines period length and temperature compensation. Proc. Natl. Acad. Sci. USA. 1994a; 91: 7683–7687
   PubMed Web of Science ®Google Scholar
• Aronson B. D., Johnson K. A., Loros J. J., Dunlap J. C. Negative feedback defining a circadian clock: autoregulation of the clock gene frequency. Science 1994b; 263: 1578–1584
   PubMed Web of Science ®Google Scholar
• Aschoff J., Gerecke U., Wever R. Desynchronization of human circadian rhythms. Jap. J. Physiol. 1967; 17: 450–457
   PubMedGoogle Scholar
• Ballario P., Vittorioso P., Magrelli A., Talora C., Cabibbo A., Macino G. White collar‐1, a central regulator of blue light responses in Neurospora, is a zinc finger protein. EMBO J. 1996; 15: 1650–1657
   PubMed Web of Science ®Google Scholar
• Balsalobre A., Damiola F., Schibler U. A serum shock induces gene expression in mammalian tissue culture cells. Cell 1998; 93: 929–937
   PubMed Web of Science ®Google Scholar
• Collett M. A., Garceau N., Dunlap J. C., Loros J. J. Light and clock expression of the Neurospora clock gene frequency is differentially driven by but dependent on WHITE COLLAR‐2. Genetics 2002; 160: 149–158
   PubMedGoogle Scholar
• Crosthwaite S. K., Loros J. J., Dunlap J. C. Light‐induced resetting of a circadian clock is mediated by a rapid increase in frequency transcript. Cell 1995; 81: 1003–1012
   PubMedGoogle Scholar
• Crosthwaite S. K., Dunlap J. C., Loros J. J. Neurospora wc‐1 and wc‐2: Transcription, photoresponses, and the origin of circadian rhythmicity. Science 1997; 276: 763–769
   PubMed Web of Science ®Google Scholar
• Diernfellner A. C., Schafmeier T., Merrow M. W., Brunner M. Molecular mechanisms of temperature sensing by the circadian clock of Neurospora crassa. Genes Dev. 2005; 19: 1968–1973
   PubMedGoogle Scholar
• Elvin M., Loros J. J., Dunlap J. C., Heintzen C. The PAS/LOV protein VIVID supports a rapidly dampened daytime oscillator that facilitates entrainment of the Neurospora circadian clock. Genes Dev. 2005; 19: 2593–2605
   PubMedGoogle Scholar
• Feldman J. F., Hoyle M. N. Isolation of circadian clock mutants of Neurospora crassa. Genetics 1973; 75: 605–613
   PubMed Web of Science ®Google Scholar
• Froehlich A. C., Liu Y., Loros J. J., Dunlap J. C. WHITE COLLAR‐1, a circadian blue light photoreceptor, binding to the frequency promoter. Science 2002; 297: 815–819
   PubMed Web of Science ®Google Scholar
• Galagan J. E., Calvo S. E., Borkovich K. A., Selker E. U., Read N. D., Jaffe D., et al. The genome sequence of the filamentous fungus Neurospora crassa. Nature 2003; 422: 859–868
   PubMed Web of Science ®Google Scholar
• Grima B., Chélot E., Xia R., Rouyer F. Morning and evening peaks of activity rely on different clock neurons of the Drosophila brain. Nature 2004; 431: 869–873
   PubMed Web of Science ®Google Scholar
• He Q., Cheng P., Yang Y., Wang L., Gardner K. H., Liu Y. WHITE COLLAR‐1, a DNA binding transcription factor and light sensor. Science 2002; 297: 840–843
   PubMed Web of Science ®Google Scholar
• Heintzen C., Loros J. J., Dunlap J. C. The PAS protein VIVID defines a clock‐associated feedback loop that represses light input, modulates gating, and regulates clock resetting. Cell 2001; 104: 453–464
   PubMed Web of Science ®Google Scholar
• Hoffmann K. Zur Beziehung zwischen Phasenlage und Spontanfrequenz bei der endogenen Tagesperiodik. Z. Naturforschg. 1963; 18 b: 154–157
   Google Scholar
• Honma K., von Goetz C., Aschoff J. Effects of restricted daily feeding on free running circadian rhythms in rats. Physiol. Behav. 1983; 30: 905–913
   PubMed Web of Science ®Google Scholar
• Johnson C. H. Endogenous timekeepers in photosynthetic organisms. Annu. Rev. Physiol. 2001; 63: 695–728
   PubMed Web of Science ®Google Scholar
• Konopka R., Benzer S. Clock mutants of Drosophila melanogaster. Proc. Natl. Acad. Sci. USA. 1971; 68: 2112–2116
   PubMed Web of Science ®Google Scholar
• Lee K., Loros J. J., Dunlap J. C. Interconnected feedback loops in the Neurospora circadian system. Science 2000; 289: 107–110
   PubMed Web of Science ®Google Scholar
• Linden H., Macino G. White collar 2, a partner in blue‐light signal transduction controlling expression of light‐regulated genes in Neurospora crassa. EMBO J. 1997; 16: 98–109
   PubMed Web of Science ®Google Scholar
• Liu Y. Molecular mechanisms of entrainment in the Neurospora circadian clock. J. Biol. Rhythms 2003; 18: 195–205
   PubMedGoogle Scholar
• Liu Y., Merrow M., Loros J. L., Dunlap J. C. How temperature changes reset a circadian oscillator. Science 1998; 281: 825–829
   PubMed Web of Science ®Google Scholar
• Loros J. J., Feldman J. F. Loss of temperature compensation of circadian period length in the frq‐9 mutant of Neurospora crassa. J. Biol. Rhythms 1986; 1: 187–198
   PubMedGoogle Scholar
• McClung C. R., Fox B. A., Dunlap J. C. The Neurospora clock gene frequency shares a sequence element with the Drosophila clock gene period. Nature 1989; 339: 558–562
   PubMed Web of Science ®Google Scholar
• Merrow M., Roenneberg T. Enhanced phenotyping of complex traits with a circadian clock model. Meth. Enzymol. 2005; 393: 251–265
   PubMedGoogle Scholar
• Merrow M., Brunner M., Roenneberg T. Assignment of circadian function for the Neurospora clock gene frequency. Nature 1999; 399: 584–586
   PubMed Web of Science ®Google Scholar
• Merrow M., Franchi L., Dragovic Z., Görl M., Johnson J., Brunner M., Macino G., Roenneberg T. Circadian regulation of the light input pathway in Neurospora crassa. EMBO J. 2001; 20: 307–315
   PubMedGoogle Scholar
• Mrosovsky N., Hattar S. Diurnal mice (Mus musculus) and other examples of temporal niche switching. J. Comp. Physiol. A Neuroethol. Sens. Behav. Physiol. 2005; 191: 1011–1024
   PubMed Web of Science ®Google Scholar
• Pittendrigh C. S., Daan S. A functional analysis of circadian pacemakers in nocturnal rodents. IV. Entrainment: Pacemaker as clock. J. Comp. Physiol. A 1976; 106: 291–331
   Web of Science ®Google Scholar
• Pittendrigh C. S., Bruce V. G., Rosensweig N. S., Rubin M. L. Growth patterns in Neurospora crassa. Nature 1959; 184: 169–170
   Web of Science ®Google Scholar
• Pregueiro A., Price‐Lloyd N., Bell‐Pedersen D., Heintzen C., Loros J. J., Dunlap J. C. Assignment of an essential role for the Neurospora frequency gene in circadian entrainment to temperature cycles. Proc. Natl. Acad. Sci. USA. 2005; 102: 2210–2215
   PubMedGoogle Scholar
• Roden L., Song H., Jackson S., Morris K., Carre I. A. Floral responses to photoperiod are correlated with timing of rhythmic expression relative to dawn and dusk in Arabidopsis. Proc. Natl. Acad. Sci. USA. 2002; 99: 13313–13318
   PubMed Web of Science ®Google Scholar
• Roenneberg T., Merrow M. Molecular circadian oscillators—an alternative hypothesis. J. Biol. Rhythms 1998; 13: 167–179
   PubMedGoogle Scholar
• Roenneberg T., Merrow M. Circadian clocks and metabolism. J. Biol. Rhythms 1999; 14: 449–459
   PubMed Web of Science ®Google Scholar
• Roenneberg T., Merrow M. Life before the clock—modeling circadian evolution. J. Biol. Rhythms 2002a; 17: 495–505
   PubMed Web of Science ®Google Scholar
• Roenneberg T., Merrow M. “What watch? — such much!” — complexity and evolution of circadian clocks. Cell Tissue Res. 2002b; 309: 3–9
   PubMed Web of Science ®Google Scholar
• Roenneberg T., Taylor W. Automated recordings of bioluminescence with special reference to the analysis of circadian rhythms. Meth. Enzymol. 2000; 305: 104–119
   PubMed Web of Science ®Google Scholar
• Roenneberg T., Merrow M., Eisensamer B. Cellular mechanisms of circadian systems. Zoology 1998; 100: 273–286
   Google Scholar
• Roenneberg T., Dragovic Z., Merrow M. Demasking biological oscillators: Properties and principles of entrainment exemplified by the Neurospora circadian clock. Proc. Natl. Acad. Sci. USA. 2005; 102: 7742–7747
   PubMedGoogle Scholar
• Sargent M. L., Briggs W. R., Woodward D. O. Circadian nature of a rhythm expressed by an invertaseless strain of Neurospora crassa. Plant Physiol. 1956; 41: 1343–1349
   Google Scholar
• Schwerdtfeger C., Linden H. VIVID is a flavoprotein and serves as a fungal blue light photoreceptor for photoadaptation. EMBO J. 2003; 22: 4846–4855
   PubMed Web of Science ®Google Scholar
• Schafmeier T., Haase A., Kaldi K., Scholz J., Fuchs M., Brunner M. Transcriptional feedback of Neurospora circadian clock gene by phosphorylation‐dependent inactivation of its transcription factor. Cell 2005; 122: 235–246
   PubMedGoogle Scholar
• Shrode L. B., Lewis Z. A., White L. D., Bell‐Pedersen D., Ebbole D. J. vvd is required for light adaptation of conidiation‐specific genes of Neurospora crassa, but not circadian conidiation. Fung. Gen. Biol. 2001; 32: 169–181
   PubMed Web of Science ®Google Scholar
• Stoleru D., Peng Y., Agosto J., Rosbash M. Coupled oscillators control morning and evening locomotor behaviour of Drosophila. Nature 2004; 431: 862–868
   PubMed Web of Science ®Google Scholar
• Tan Y., Merrow M., Roenneberg T. Photoperiodism in Neurospora crassa. J. Biol. Rhythms 2004a; 19: 135–143
   PubMedGoogle Scholar
• Tan Y., Dragovic Z., Roenneberg T., Merrow M. Entrainment of the circadian clock: translational and post‐translational control as key elements. Curr. Biol. 2004b; 14: 433–438
   PubMedGoogle Scholar
• Welsh D. K., Logothetis D. E., Meister M., Reppert S. M. Individual neurons dissociated from rat suprachiasmatic nucleus express independently phased circadian firing rhythms. Neuron 1995; 14: 697–706
   PubMed Web of Science ®Google Scholar