Publication Cover
Chronobiology International
The Journal of Biological and Medical Rhythm Research
Volume 36, 2019 - Issue 1
305
Views
14
CrossRef citations to date
0
Altmetric
Original Articles

Daily expression of clock genes in central and peripheral tissues of tree sparrow (Passer montanus)

, , &
Pages 110-121 | Received 03 Aug 2018, Accepted 10 Sep 2018, Published online: 26 Oct 2018

References

  • Abe H, Honma S, Namihira M, Tanahashi Y, Ikeda M, Yu W, Honma K. 1999. Phase dependent induction by light of rat clock gene expression in the suprachiasmatic nucleus. Mol Brain Res. 66:104–10.
  • Abraham U, Albrecht U, Brandsta¨Tter R. 2003. Hypothalamic circadian organization in birds. II. Clock Gene Expression. Chronobiol Int. 20:657–69.
  • Abraham U, Albrecht U, Gwinner E, Brandstätter R. 2002. Spatial and temporal variation of passer per2 gene expression in two distinct cell groups of the suprachiasmatic hypothalamus in the house sparrow (Passer domesticus). Eur J Neurol. 16:429–36.
  • Albrecht U, Sun ZS, Eichele G, Lee CC. 1997. A differential response of two putative mammalian circadian regulators, mPer1 and mPer2, to light. Cell. 91:1055–64.
  • Bailey MJ, Beremand PD, Hammer R, Bell-Pedersen D, Thomas TL, Cassone VM. 2003. Transcriptional profiling of the chick pineal gland, a photoreceptive circadian oscillator and pacemaker. Mol Endocrinol. 17:2084–95.
  • Bailey MJ, Beremand PD, Hammer R, Bell-Pedersen D, Thomas TL, Cassone VM. 2004. Transcriptional profiling of circadian patterns of mRNA expression in the chick retina. J Biol Chem. 279:52247–54.
  • Brandstatter R, Abraham U, Albrecht U. 2001. Initial demonstration of rhythmic per gene expression in the hypothalamus of a non-mammalian vertebrate, the house sparrow. Neuroreport. 12:1167–70.
  • Cassone VM, Menaker M. 1984. Is the avian circadian system a neuroendocrine loop? J Exp Zool. 232:539–49.
  • Chen R, Schirmer A, Lee Y, Lee H, Kumar V, Yoo SH, Takahashi JS, Lee C. 2009. Rhythmic PER abundance defines a critical nodal point for negative feedback within the circadian clock mechanism. Mol Cell. 36:417–30.
  • Cuesta M, Clesse D, Pe´Vet p, Challet E. 2009. From daily behaviour to hormonal and neurotransmitters rhythms: Comparison between diurnal and nocturnal rat species. Horm Behav. 55:338–47.
  • Darlington TK, Wager-Smith K, Ceriani MF, Staknis D, Gekakis N, Steeves TD, Weitz CJ, Takahashi JS, Kay SA. 1998. Closing the circadian loop: CLOCK-induced transcription of its own inhibitors per and tim. Science (80- ). 280:1599–603.
  • Doi M, Nakajima Y, Okano T, Fukada Y. 2001. Light-induced phase-delay of the chicken pineal circadian clock is associated with the induction of cE4bp4, a potential transcriptional repressor of cPer2 gene. Proc Natl Acad Sci U S A. 98:8089–94.
  • Doi R, Oishi K, Ishida N. 2010. CLOCK regulates circadian rhythms of hepatic glycogen synthesis through transcriptional activation of Gys2. J Bio. Chem. 285:22114–21.
  • Fu Z, Inaba M, Noguchi T, Kato H. 2002. Molecular cloning and circadian regulation of cryptochrome genes in Japanese quail (Coturnix coturnix japonica). J Biol Rhythms. 17:14–27.
  • Guillaumond F, Gréchez-Cassiau A, Subramaniam M, Brangolo S, Peteri-Brünback B, Staels B, Fiévet C, Spelsberg TC, Delaunay F, Teboul M. 2010. Kruppel-like factor KLF10 is a link between the circadian clock and metabolism in liver. Mol Cell Biol. 30:3059–70.
  • Gwinner E, Brandstatter R. 2001. Complex bird clocks. Phil Trans R Soc Lond B. 356:1801–10.
  • Haque R, Chaurasia SS, Wessel JH, Iuvone PM. 2002. Dual regulation of cryptochrome1 mRNA expression in chicken retina by light and circadian oscillators. Neuroreport. 13:2247–51.
  • Harbour VL, Weigl Y, Robinson B, Amir S. 2014. Phase differences in expression of circadian clock genes in the central nucleus of the amygdala. Dentate Gyrus, and Suprachiasmatic Nucleus in the Rat. PLoS One. 9(7):e103309.
  • Helfer G, Fidler AE, Vallone D, Foulkes NS, Brandstaetter R. 2006. Molecular analysis of clock gene expression in the avian brain. Chronobiol Int. 23:113–27.
  • Jiang N, Wang Z, Cao J, Dong Y, Chen Y. 2017. Effect of monochromatic light on circadian rhythmic expression of clock genes in the hypothalamus of chick. J Photochem Photobiol B. 173:476–84.
  • Karaganis SP, Kumar V, Beremand PD, Bailey MJ, Thomas TL, Cassone VM. 2008. Circadian genomics of the chick pineal gland in vitro. BMC Genomics. 3(9):206.
  • Karaganis SP, Bartell PA, Shende VR, Moore AF, Cassone VM. 2009. Modulation of metabolic and clock gene mRNA rhythms by pineal and retinal circadian oscillators. Gen Comp Endocrinol. 161(2):179–92.
  • Kumar V, Singh BP, Rani S. 2004. The bird clock: a complex, multi-oscillatory and highly diversified system. Biol Rhythm Res. 35:121–44.
  • Kumar V, Wingfield JC, Dawson A, Ramenofsky M, Rani S, Bartell P. 2010. Biological clocks and regulation of seasonal reproduction and migration in birds. Physiol Biochem Zool. 83:827–35.
  • Lavery DJ, Schibler U. 1993. Circadian transcription of the cholesterol 7alpha hydroxylase gene may involve the liver-enriched bZIP protein DBP. Genes Dev. 7:1871–84.
  • Le Martelot G, Claudel T, Gatfield D, Schaad O, Kornmann B, Lo Sasso G, Moschetta A, Schibler U. 2009. REV-ERBalpha participates in circadian SREBP signaling and bile acid homeostasis. PLoS Biol. 7(9):e1000181.
  • Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(–ddC(T)) method. Methods. 25:402–08.
  • Oishi K, Atsumi G, Sugiyama S, Kodomari I, Kasamatsu M, Machida K, Ishida N. 2006. Disrupted fat absorption attenuates obesity induced by a high-fat diet in Clock mutant mice. FEBS Lett. 580(1):127–30.
  • Oishi K, Sakamoto K, Okada T, Nagase T, Ishida N. 1998. Antiphase circadian expression between BMAL1 and Period homologue mRNA in the suprachiasmatic nucleus and peripheral tissues of rats. Biochem Biophys Res Commun. 253:199–203.
  • Okano T, Fukada Y. 2001. Photoreception and circadian clock system of the chicken pineal gland. Microsc Res Tech. 53:72–80.
  • Okano T, Yamamoto K, Okano K, Hirota T, Kasahara T, Sasaki M, Takanaka Y, Fukada Y. 2001. Chicken pineal clock genes: implication of BMAL2 as a bidirectional regulator in circadian clock oscillation. Genes Cells. 6:825–36.
  • Oster H, Yasui A, Gtj VDH, Albrecht U. 2002. Disruption of mCry2 restores circadian rhythmicity in mPer2 mutant mice. Genes Dev. 16:2633–38.
  • Pinzon-Rodriguez A, Bensch S, Muheim R. 2018. Expression patterns of cryptochrome genes in avian retina suggest involvement of Cry4 in light-dependent magnetoreception. J R Soc Interface. 15:20180058. doi:10.1098/rsif.2018.0058. pii.
  • Portaluppi F, Smolensky MH, Touitou Y. 2010. Ethics and methods for biological rhythm research on animals and human beings. Chronobiol Int. 27:1911–29.
  • Raspé E, Duez H, Mansén A, Fontaine C, Fiévet C, Fruchart JC, Vennström B, Staels B. 2001. Transcriptional regulation of apolipoprotein C-III gene expression by the orphan nuclear receptor RORalpha. J Biol Chem. 276:2865–71.
  • Raspé E, Duez H, Mansén A, Fontaine C, Fiévet C, Fruchart JC, Vennström B, Staels B. 2002. Identification of Rev-erbalpha as a physiological repressor of apoC-III gene transcription. J Lipid Res. 43:2172–79.
  • Reppert SM, Weaver DR. 2002. Coordination of circadian timing in mammals. Nature. 418:935–41.
  • Rudic RD, McNamara P, Curtis AM, Boston RC, Panda S, Hogenesch JB, Fitzgerald GA. 2004. BMAL1 and CLOCK, two essential components of the circadian clock, are involved in glucose homeostasis. PLoS Biol. 2(11):e377.
  • Rusak B, Zucker I. 1979. Neural regulation of circadian rhythms. Physiol Rev. 59:449–526.
  • Schibler U, Ripperger J, Brown SA. 2003. Peripheral circadian oscillators in mammals: Time and food. J Biol Rhythms. 18(3):250–60.
  • Singh D, Rani S, Kumar V. 2013. Daily expression of six clock genes in central and peripheral tissues of a night-migratory songbird: Evidence for tissue-specific circadian timing. Chronobiol Int. 30:1208–17.
  • Singh D, Trivedi AK, Rani S, Panda S, Kumar V. 2015. Circadian timing in central and peripheral tissues in a migratory songbird: Dependence on annual life-history states. FASEB J. 29:1–8.
  • Soper DS. 2013. F-Value and p-Value Calculator for Multiple Regression [online software]. Available at: http://www.danielsoper.com/statcalc. Accessed April 6, 2013
  • Trivedi AK, Malik S, Rani S, Kumar V. 2016. Pinealectomy abolishes circadian behavior and interferes with circadian clock gene oscillations in brain and liver but not retina in a
migratory songbird. Physiol Behav. 156:156–63.
  • Wang Y, Kumar N, Solt LA, Richardson TI, Helvering LM, Crumbley C, Garcia-Ordonez RD, Stayrook KR, Zhang X, Novick S, Chalmers MJ, Griffin PR, Burris TP. 2009. Modulation of ROR {alpha} and ROR{gamma} activity by 7-oxygenated sterol ligands. J Biol Chem. 285:5013–25.
  • Welsh DK, Logthetis DE, Meister M, Reppert SM. 1995. Individual neurons dissociated from rat suprachiasmatic nucleus express independently phased circadian firing rhythms. Neuron. 14:697–706.
  • Yamamoto Y, Yagita K, Okamura H. 2005. Role of cyclic mPer2 expression in the mammalian cellular clock. Mol Cell Biol. 25:1912–21.
  • Yamazaki S, Numano R, Abe M, Hida A, Takahashi R, Ueda M, Block GD, Sakaki Y, Menaker M, Tei H. 2000. Resetting central and peripheral circadian oscillators in transgenic rats. Science (80- ). 288:682–85.
  • Yasuo S, Watanabe M, Okabayashi N, Ebihara S, Yoshimura T. 2003. Circadian clock genes and photoperiodism: Comprehensive analysis of clock gene expression in the mediobasal hypothalamus, the suprachiasmatic nucleus, and the pineal gland of Japanese quail under various light schedules. Endocrinology. 144:3742–48.
  • Yasuo S, Yoshimura T, Bartell PA, Iigo M, Makino E, Okabayashi N, Ebihara S. 2002. Effect of melatonin administration on qPer2, qPer3, and qClock gene expression in the suprachiasmatic nucleus of Japanese quail. Eur J Neurol. 16:1541–46.
  • Yin L, Wu N, Lazar MA. 2010. Nuclear receptor rev-erbalpha: A heme receptor that coordinates circadian rhythm and metabolism. Nucl Recept Signal. 8:e001.
  • Yoshimura T, Suzuki Y, Makino E, Suzuki T, Kuroiwa A, Matsuda Y, Namikawa T, Ebihara S. 2000. Molecular analysis of avian circadian clock genes. Mol Brain Res. 78:207–15.
  • Yoshimura T, Yasuo S, Suzuki Y, Makino E, Yokota Y, Ebihara S. 2001. Identification of the suprachiasmatic nucleus in birds. Am J Physiol Regul Integr Comp Physiol. 280:1185–89.
  • Zhang EE, Liu Y, Dentin R, Pongsawakul PY, Liu AC, Hirota T, Nusinow DA, Sun X, Landais S, Kodama Y, Brenner DA, Montminy M, Kay SA. 2010. Cryptochrome mediates circadian regulation of cAMP signaling and hepatic gluconeogenesis Cryptochrome mediates circadian regulation of cAMP signaling and hepatic gluconeogenesis. Nat Med. 16:1152–56.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.