328
Views
5
CrossRef citations to date
0
Altmetric
Original Paper

Development of a 16S rRNA-based Probe for Clostridium ramosum, C. spiroforme and C. cocleatum and its Application for the Quantification in Human Faeces from Volunteers of Different Age Groups

, , &
Pages 131-136 | Received 09 May 2003, Accepted 12 Sep 2003, Published online: 11 Jul 2009

REFERENCES

  • Falk PG, Hooper LV, Midtvedt T, Gordon JI. Creating and maintaining the gastrointestinal ecosystem: what we know and need to know from gnotobiology. Microbiol Mol Biol Rev 1998; 62: 1157–70.
  • Jousimies-Somer HR, Summanen P, Citron DM, Baron EJ, Wexler HM, Finegold. SM. Anaerobic Bacteriology Manual, 6th edn. Belmont, CA: Star Publishing Company, 2002.
  • Harmsen HJM, Wildeboer-Veloo ACM, Grijpstra J, Knol J, Degener JE, Welling GW. Development of 16S rRNA-based probes for the Coriobacterium group and the Atopobium cluster and their application for enumeration of Coriobacter-iaceae in human faeces from volunteers of different age groups. Appl Environ Microbiol 2000; 66: 4523–7.
  • Franks AH, Harmsen HJM, Raangs GC, Jansen GI Schut F, Welling GW. Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes. Appl En-viron Microbiol 1998; 64: 3336–45.
  • Zoetendal EG, Akkermans ADL, de Vos WM. Temperature gradient gel electrophoresis analysis of 16S rRNA from human faecal samples reveals stable and host-specific communities of active bacteria. Appl Environ Microbiol 1998; 64: 3854–9.
  • Maidak BL, Cole JR, Parker CT, Garrity GM, Larsen N, Li B, Lilbum TG, McCaughey MI Olsen GI Overbeek R, Pramanik S, Schmidt TM, Tiedje JM, Woese CR. A new version of the RDP (Ribosomal Database Project). Nucleic Acids Res 1999; 27: 171–3.
  • Harmsen HJM, Raangs GC, He T, Degener JE, Welling GW. Extensive set of 16S rRNA-based probes for the detection of bacteria in human feces. Appl Environ Micriobiol 2002; 68: 2982–90.
  • Suau A, Rochet V, Sghir A, Gramet G, Brewaeys S, Sutren M, Rigottier L, Dore J. Fusobacterium prausnitzii and related species represent a dominant group within the human fecal flora. Syst Appl Microbiol 2001; 24: 139–45.
  • Gibson GR, Roberfroid MB. Dietary modulation of the human colonic microbiota: introducing the concept of prebiotics. J Nutr 1995; 125: 1401–12.
  • Kalliomäki M, Kirjavanen P, Eerola E, Kero P, Salminen S, Esolauri E. Distinct patterns of neonatal gut microflora in infants in whom atopy was and was not developing. J Allergy Clin Immunol 2001; 107: 129–34.
  • Borriello SR Clostridial disease of the gut. Clin Infect Dis 1995; 20\(Suppl 2): S242–50.
  • Popoff MR. Interactions between bacterial toxins and intest-inal cells. Toxicon 1998; 36: 665–85.
  • Murray RGE, Brenner DJ, Bryant MP, Holt JG, Krieg NR, Moulder JW, Pfennig N, Sneath PHA, Staley JT. Bergey's Manual of Systematic Bacteriology, vol. 2, 1st edn. Baltimore: Williams and Wilkins, 1986.
  • Mackie RI, Sghir A, Gaskins HR. Developmental microbial ecology of the neonatal gastrointestinal tract. Am J Clin Nutr 1999; 69(Suppl): 1035S–45S.
  • Su WI Bourlioux P, Bournaud M, Besnier MO, Fourniat J. Transfer of the caecal flora of the hamster to the germfree C3H mouse: use of this model to study the flora of the anti-Clostridium difficile barrier. Can J Microbiol 1986; 32: 132–6.
  • Thomas V, Rochet V, Boureau H, Ekstrand C, Bulteau S, Doré J, Collignon A, Bourlioux P. Molecular characterization and spatial analysis of a simplified gut microbiota displaying colonization resistance against Clostridium difficile. Microb Ecol Health Dis 2002; 14: 203–10.
  • Bladen HA, Nylen MU, Fitzgerald RI Internal structures of a Eubacterium sp. demonstrated by the negative staining techni-que. J Bacteriol 1964; 88: 763–70.
  • Fitzgerald RI McBride JA, Jordan HV, Gustafson BE. Helically coiled micro-organism from caecum contents of the rat. Nature [London] 1965; 205: 1133–4.
  • Kaneuchi C, Miyazato T, Shinjo T, Mitsuoka T. Taxonomic study of helically coiled, sporeforming anaerobes isolated from the intestines of humans and other animals: Clostridium cocleatum sp. nov. and Clostridium spiroforme sp. nov. Int J Syst Bacteriol 1979; 29: 1–12.
  • Sugihara PT, Sutter VL, Bricknell KS, Finegold SM. Anaero-bic, non-sporulating, gram-positive bacilli with coiling char-acteristics isolated from human feces. Abstr Annu Meet Am Soc Microbiol 1977; C146: 59.
  • Senda S, Fujiyama Y, Ushijima T, Hodohara K, Bamba T, Hosoda S, Kobayashi K. Clostridium ramosum, an IgA protease-producing species and its ecology in the human intestinal tract. Microbiol Immunol 1985; 29: 1019–28.
  • Kikuchi E, Miyamoto Y, Narushima S, Itoh K. Design of species-specific primers to identify 13 species of Clostridium harbored in human intestinal tracts. Microbiol Immunol 2002; 46: 353–8.
  • Ludwig W, Strunk O, Klugbauer S, Klugbauer N, Weizenegger M, Neumaier J, Bachleitner M, Schleifer KH. Bacterial phylogeny based on comparative sequence analysis. Electro-phoresis 1998; 19: 554–68.
  • Amann RI, Binder BJ, Olson RI Chrisholm SW, Devereux R, Stahl DA. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 1990; 56: 1919–25.
  • Jansen GI Wildeboer-Veloo ACM, Tonk RHJ, Franks AH, Welling GW. Development and validation of an automated, microscopy-based method for the enumeration of groups of intestinal bacteria. J Microbiol Methods 1999; 37: 215–21.
  • Stark PL, Lee A. Clostridia isolated from the feces of infants during the first year of life. J Pediatr 1982; 100: 362–5.
  • Midtvedt AC, Carlstedt-Duke B, Norin KE, Saxerholt H, Midtvedt T. Development of five metabolic activities associated with the intestinal microflora of healthy infants. J Pediatr Gastroenterol Nutr 1988; 7: 559–67.
  • Fahmy K, Gray CH, Nicholson DC. The reduction of bile pigments by faecal and intestinal bacteria. Biochim Biophys Acta 1972; 264: 85–97.
  • Vitek L, Kotal P, Jirsa M, Malina J, Cema M, Chmelar D, Fevery J. Intestinal colonization leading to fecal urobilinoid excretion may play a role in the pathogenesis of neonatal jaundice. J Pediatr Gastroenterol Nutr 2000; 30: 294–8.
  • Cebra JC. Influences of microbiota on intestinal immune system development. Am J Clin Nutr 1999; 69(Suppl): 1046S–51S.
  • Holdeman LV, Cato EP, Moore WEC. Anaerobe Laboratory Manual, 4th edn. Blackburg: Virginia Polytechnic Institute and State University, 1977.