Prospective Study of Metal Fume-Induced Responses of Global Gene Expression Profiling in Whole Blood

REFERENCES

• S. P. Anderson, P. Howroyd, J. Liu, X. Qian, R. Bahnemann, C. Swanson, M. K. Kwak, T. W. Kensler, and J. C. Corton. (2004). The transcriptional response to a peroxisome proliferator-activated receptor alpha agonist includes increased expression of proteome maintenance genes. J. Biol. Chem. 279 (50):52390–52398.
   PubMed Web of Science ®Google Scholar
• J. M. Antonini. (2003). Health effects of welding. Crit. Rev. Toxicol. 33 (1):61–103.
   PubMed Web of Science ®Google Scholar
• M. Ashburner, C. A. Ball, J. A. Blake, D. Botstein, H. Butler, J. M. Cherry, A. P. Davis, K. Dolinski, S. S. Dwight, J. T. Eppig, M. A. Harris, D. P. Hill, L. Issel-Tarver, A. Kasarskis, S. Lewis, J. C. Matese, J. E. Richardson, M. Ringwald, G. M. Rubin, and G. Sherlock. (2000). Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25 (1):25–29.
   PubMed Web of Science ®Google Scholar
• K. Donaldson, L. Tran, L. A. Jimenez, R. Duffin, D. E. Newby, N. Mills, W. MacNee, and V. Stone. (2005). Combustion-derived nanoparticles: A review of their toxicology following inhalation exposure. Part. Fibre Toxicol. 2 (10):10.
   PubMedGoogle Scholar
• M. El-Zein, J. L. Malo, C. Infante-Rivard, and D. Gautrin. (2003). Incidence of probable occupational asthma and changes in airway calibre and responsiveness in apprentice welders. Eur. Respir. J. 22 (3):513–518.
   PubMed Web of Science ®Google Scholar
• B. G. Ferris. (1978). Epidemiology Standardization Project (American Thoracic Society). Am. Rev. Respir. Dis. 118 (6 Pt 2):1–120.
   PubMedGoogle Scholar
• M. Frohlich, M. Sund, H. Lowel, A. Imhof, A. Hoffmeister, and W. Koenig. (2003). Independent association of various smoking characteristics with markers of systemic inflammation in men. Results from a representative sample of the general population (MONICA Augsburg Survey 1994/95). Eur. Heart J. 24 (14):1365–1372.
   PubMed Web of Science ®Google Scholar
• M. Gleeson, and N. C. Bishop. (2005). The T cell and NK cell immune response to exercise. Ann. Transplant. 10 (4):43–48.
   PubMedGoogle Scholar
• L. Guo, E. K. Lobenhofer, C. Wang, R. Shippy, S. C. Harris, L. Zhang, N. Mei, T. Chen, D. Herman, F. M. Goodsaid, P. Hurban, K. L. Phillips, J. Xu, X. Deng, Y. A. Sun, W. Tong, Y. P. Dragan, and L. Shi. (2006). Rat toxicogenomic study reveals analytical consistency across microarray platforms. Nat. Biotechnol. 24 (9):1162–1169.
   PubMed Web of Science ®Google Scholar
• P. Hong, and W. H. Wong. (2005). GeneNotes—A novel information management software for biologists. BMC Bioinformatics 6:20.
   PubMed Web of Science ®Google Scholar
• J. Y. Kim, J. C. Chen, P. D. Boyce, and D. C. Christiani. (2005). Exposure to welding fumes is associated with acute systemic inflammatory responses. Occup. Environ. Med. 62 (3):157–163.
   PubMed Web of Science ®Google Scholar
• H. Koskinen, P. Pehkonen, E. Vehniainen, A. Krasnov, C. Rexroad, S. Afanasyev, H. Molsa, and A. Oikari. (2004). Response of rainbow trout transcriptome to model chemical contaminants. Biochem. Biophys. Res. Commun. 320 (3):745–753.
   PubMed Web of Science ®Google Scholar
• A. Krasnov, H. Koskinen, P. Pehkonen, C. E. Rexroad3rd, S. Afanasyev, and H. Molsa. (2005). Gene expression in the brain and kidney of rainbow trout in response to handling stress. BMC Genomics 6 (1):3.
   PubMedGoogle Scholar
• C. Li, and W. H. Wong. (2001). Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proc. Natl. Acad. Sci. USA 98 (1):31–36.
   PubMed Web of Science ®Google Scholar
• H. Li, and Y. Luan. (2005). Boosting proportional hazards models using smoothing splines, with applications to high-dimensional microarray data. Bioinformatics 21 (10):2403–2409.
   PubMed Web of Science ®Google Scholar
• S. Li, M. J. Becich, and J. Gilbertson. (2004). Microarray data mining using gene ontology. Medinfo 11 (Pt 2):778–82.
   Google Scholar
• D. Liao, G. Heiss, V. M. Chinchilli, Y. Duan, A. R. Folsom, H. M. Lin, and V. Salomaa. (2005). Association of criteria pollutants with plasma hemostatic/inflammatory markers: A population-based study. J. Expos. Anal. Environ. Epidemiol. 15 (4):319–328.
   PubMedGoogle Scholar
• W. M. Liu, R. Mei, X. Di, T. B. Ryder, E. Hubbell, S. Dee, T. A. Webster, C. A. Harrington, M. H. Ho, J. Baid, and S. P. Smeekens. (2002). Analysis of high density expression microarrays with signed-rank call algorithms. Bioinformatics 18 (12):1593–1599.
   PubMed Web of Science ®Google Scholar
• S. R. Magari, R. Hauser, J. Schwartz, P. L. Williams, T. J. Smith, and D. C. Christiani. (2001). Association of heart rate variability with occupational and environmental exposure to particulate air pollution. Circulation 104 (9):986–991.
   PubMed Web of Science ®Google Scholar
• V. Mello-Coelho, and K. L. Hess. (2005). A conceptual and practical overview of cDNA microarray technology: Implications for basic and clinical sciences. Braz. J. Med. Biol, Res. 38 (10):1543–1552.
   PubMed Web of Science ®Google Scholar
• J. G. Moggs. (2005). Molecular responses to xenoestrogens: Mechanistic insights from toxicogenomics. Toxicology 213 (3):177–193.
   PubMedGoogle Scholar
• V. K. Mootha, C. M. Lindgren, K. F. Eriksson, A. Subramanian, S. Sihag, J. Lehar, P. Puigserver, E. Carlsson, M. Ridderstrale, E. Laurila, N. Houstis, M. J. Daly, N. Patterson, J. P. Mesirov, T. R. Golub, P. Tamayo, B. Spiegelman, E. S. Lander, J. N. Hirschhorn, D. Altshuler, and L. C. Groop. (2003). PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. Nat. Genet. 34 (3):267–273.
   PubMed Web of Science ®Google Scholar
• M. E. Patti, A. J. Butte, S. Crunkhorn, K. Cusi, R. Berria, S. Kashyap, Y. Miyazaki, I. Kohane, M. Costello, R. Saccone, E. J. Landaker, A. B. Goldfine, E. Mun, R. DeFronzo, J. Finlayson, C. R. Kahn, and L. J. Mandarino. (2003). Coordinated reduction of genes of oxidative metabolism in humans with insulin resistance and diabetes: Potential role of PGC1 and NRF1. Proc. Natl. Acad. Sci. USA 100 (14):8466–8471.
   PubMed Web of Science ®Google Scholar
• J. Pekkanen, E. J. Brunner, H. R. Anderson, P. Tiittanen, and R. W. Atkinson. (2000). Daily concentrations of air pollution and plasma fibrinogen in London. Occup. Environ. Med. 57 (12):818–822.
   PubMed Web of Science ®Google Scholar
• A. Peters, D. W. Dockery, J. E. Muller, and M. A. Mittleman. (2001). Increased particulate air pollution and the triggering of myocardial infarction. Circulation 103 (23):2810–2815.
   PubMed Web of Science ®Google Scholar
• A. Peters, M. Frohlich, A. Doring, T. Immervoll, H. E. Wichmann, W. L. Hutchinson, M. B. Pepys, and W. Koenig. (2001). Particulate air pollution is associated with an acute phase response in men; Results from the MONICA–Augsburg Study. Eur. Heart J. 22 (14):1198–1204.
   PubMed Web of Science ®Google Scholar
• K. F. Petersen, S. Dufour, D. Befroy, R. Garcia, and G. I. Shulman. (2004). Impaired mitochondrial activity in the insulin-resistant offspring of patients with type 2 diabetes. N. Engl. J. Med. 350 (7):664–671.
   PubMed Web of Science ®Google Scholar
• D. M. Sadlier, S. B. Connolly, N. E. Kieran, S. Roxburgh, D. P. Brazil, L. Kairaitis, Y. Wang, D. C. Harris, P. Doran, and H. R. Brady. (2004). Sequential extracellular matrix-focused and baited-global cluster analysis of serial transcriptomic profiles identifies candidate modulators of renal tubulointerstitial fibrosis in murine adriamycin-induced nephropathy. J. Biol. Chem. 279 (28):29670–29680.
   PubMed Web of Science ®Google Scholar
• J. M. Samet, F. Dominici, F. C. Curriero, I. Coursac, and S. L. Zeger. (2000). Fine particulate air pollution and mortality in 20 U.S. cities, 1987–1994. N. Engl. J. Med. 343 (24):1742–1749.
   PubMed Web of Science ®Google Scholar
• J. Schwartz. (2001). Air pollution and blood markers of cardiovascular risk. Environ. Health Perspect. 109 (Suppl. 3):405–409.
   PubMedGoogle Scholar
• A. Seaton, A. Soutar, V. Crawford, R. Elton, S. McNerlan, J. Cherrie, M. Watt, R. Agius, and R. Stout. (1999). Particulate air pollution and the blood. Thorax 54 (11):1027–1032.
   PubMed Web of Science ®Google Scholar
• L. Shi, L. H. Reid, W. D. Jones, R. Shippy, J. A. Warrington, S. C. Baker, P. J. Collins, F. de Longueville, E. S. Kawasaki, K. Y. Lee, Y. Luo, Y. A. Sun, J. C. Willey, R. A. Setterquist, G. M. Fischer, W. Tong, Y. P. Dragan, D. J. Dix, F. W. Frueh, F. M. Goodsaid, D. Herman, R. V. Jensen, C. D. Johnson, E. K. Lobenhofer, R. K. Puri, U. Schrf, J. Thierry-Mieg, C. Wang, M. Wilson, P. K. Wolber, L. Zhang, S. Amur, W. Bao, C. C. Barbacioru, A. B. Lucas, V. Bertholet, C. Boysen, B. Bromley, D. Brown, A. Brunner, R. Canales, X. M. Cao, T. A. Cebula, J. J. Chen, J. Cheng, T. M. Chu, E. Chudin, J. Corson, J. C. Corton, L. J. Croner, C. Davies, T. S. Davison, G. Delenstarr, X. Deng, D. Dorris, A. C. Eklund, X. H. Fan, H. Fang, S. Fulmer-Smentek, J. C. Fuscoe, K. Gallagher, W. Ge, L. Guo, X. Guo, J. Hager, P. K. Haje, J. Han, T. Han, H. C. Harbottle, S. C. Harris, E. Hatchwell, C. A. Hauser, S. Hester, H. Hong, P. Hurban, S. A. Jackson, H. Ji, C. R. Knight, W. P. Kuo, J. E. LeClerc, S. Levy, Q. Z. Li, C. Liu, Y. Liu, M. J. Lombardi, Y. Ma, S. R. Magnuson, B. Maqsodi, T. McDaniel, N. Mei, O. Myklebost, B. Ning, N. Novoradovskaya, M. S. Orr, T. W. Osborn, A. Papallo, T. A. Patterson, R. G. Perkins, E. H. Peters, R. Peterson, K. L. Philips, P. S. Pine, L. Pusztai, F. Qian, H. Ren, M. Rosen, B. A. Rosenzweig, R. R. Samaha, M. Schena, G. P. Schroth, S. Shchegrova, D. D. Smith, F. Staedtler, Z. Su, H. Sun, Z. Szallasi, Z. Tezak, D. Thierry-Mieg, K. L. Thompson, I. Tikhonova, Y. Turpaz, B. Vallanat, C. Van, S. J. Walker, S. J. Wang, Y. Wang, R. Wolfinger, A. Wong, J. Wu, C. Xiao, Q. Xie, J. Xu, W. Yang, L. Zhang, S. Zhong, Y. Zong, and W. SlikkerJr.. (2006). The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat. Biotechnol. 24 (9):1151–1161.
   PubMed Web of Science ®Google Scholar
• B. Sjogren, T. Fossum, T. Lindh, and J. Weiner. (2002). Welding and ischemic heart disease. Int. J. Occup. Environ. Health 8 (4):309–311.
   PubMed Web of Science ®Google Scholar
• A. Subramanian, P. Tamayo, V. K. Mootha, S. Mukherjee, B. L. Ebert, M. A. Gillette, A. Paulovich, S. L. Pomeroy, T. R. Golub, E. S. Lander, and J. P. Mesirov. (2005). Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA 102 (43):15545–15550.
   PubMed Web of Science ®Google Scholar
• A. Sureda, M. D. Ferrer, P. Tauler, I. Maestre, A. Aguilo, A. Cordova, J. A. Tur, E. Roche, and A. Pons. (2007). Intense physical activity enhances neutrophil antioxidant enzyme gene expression. Immunocytochemistry evidence for catalase secretion. Free Radical Res. 41 (8):874–883.
   PubMed Web of Science ®Google Scholar
• S. Tavazoie, J. D. Hughes, M. J. Campbell, R. J. Cho, and G. M. Church. (1999). Systematic determination of genetic network architecture. Nat. Genet. 22 (3):281–285.
   PubMed Web of Science ®Google Scholar
• Z. Wang, D. Neuburg, C. Li, L. Su, J. Y. Kim, J. C. Chen, and D. C. Christiani. (2005). Global gene expression profiling in whole-blood samples from individuals exposed to metal fumes. Environ. Health Perspect. 113 (2):233–241.
   PubMed Web of Science ®Google Scholar