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Articles

Characterization of lesions induced in linear-formed plasmid DNA by valence ionization and Auger decay at carbon, nitrogen and oxygen

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Pages 1082-1092 | Received 14 Jan 2008, Accepted 23 Sep 2008, Published online: 03 Jul 2009

References

  • Akamatsu K. A novel methodology for characterizing strand-break termini and damaged bases in plasmid DNA exposed to ionizing radiation. Analytical Biochemistry 2007; 362: 229–235
  • Akamatsu K, Fujii K, Yokoya A. Infrared spectral change in 2-deoxy-D-ribose by irradiation with monochromatic photons around oxygen K-edge. Nuclear Instruments and Methods in Physics Research B 2003; 199: 328–331
  • Akamatsu K, Fujii K, Yokoya A. Qualitative and quantitative analyses of the decomposition products that arise from the exposure of thymine to monochromatic ultrasoft X rays and 60Co gamma rays in the solid state. Radiation Research 2004a; 161: 442–450
  • Akamatsu K, Fujii K, Yokoya A. Low-energy Auger- and photo-electron effects on the degradation of thymine by ultrasoft X-irradiation. International Journal of Radiation Biology 2004b; 80: 849–853
  • Akamatsu K, Yokoya A. X-ray absorption near edge structures of DNA or its components around the oxygen K-shell edge. Radiation Research 2001a; 155: 449–452
  • Akamatsu K, Yokoya A. X-ray absorption near edge structures (XANES) spectral change of 2-deoxy-D-ribose by irradiation with the energy region around the oxygen K-shell absorption edge. Journal of Synchrotron Radiation 2001b; 8: 1001–1002
  • Becker D, Sevilla M D. The chemical consequences of radiation damage to DNA. Advanced in Radiation Biology 1993; 17: 121–180
  • Bernhard W A, Close D M. DNA damage dictates the biological consequences of ionizing irradiation: The chemical pathway. Charge particle and photon interactions with matter – chemical, physicochemical, and biological consequences with applications, A Mozumder, Y Hatano. Marcel Dekker Inc, New York, NY 2003; 431–470
  • Burrows C J, Muller J G. Oxidative nucleobase modifications leading to strand scission. Chemical Reviews 1998; 98: 1109–1151
  • Datta K, Weinfeld M, Neumann R D, Winters T A. Determination and analysis of site-specific 125I decay-induced DNA double-strand break end-group structures. Radiation Research 2007; 167: 152–166
  • Debije M G, Razskazovskiy Y, Bernhard W A. The yield of strand breaks resulting from direct-type effects in crystalline DNA X-irradiated at 4 K and room temperature. Journal of the American Chemical Society 2001; 123: 2917–2918
  • Fayard B, Touati A, Abel F, Hervé du Penhoat M A, Despiney-Bailly I, Gobert F, Ricoul M, L'Hoir A, Politis M F, Hill M A, Stevens D L, Sage E, Goodhead D T, Chetioui A. Cell inactivation and double-strand breaks: The role of core ionizations, as probed by ultrasoft X rays. Radiation Research 2002; 157: 128–140
  • Fujii K, Akamatsu K, Muramatsu Y, Yokoya A. X-ray absorption near edge structure of DNA bases around oxygen and nitrogen K-edge. Nuclear Instruments and Methods in Physics Research B 2003a; 199: 249–254
  • Fujii K, Akamatsu K, Yokoya A. The measurement of molecular fragments from DNA components using synchrotron radiation. Surface Science 2003b; 528: 249–254
  • Fujii K, Akamatsu K, Yokoya A. Decomposition of 2-deoxy-D-ribose by irradiation with 0.6 keV electrons and by 0.5 keV ultrasoft X-rays. International Journal of Radiation Biology 2004a; 80: 909–914
  • Fujii K, Akamatsu K, Yokoya A. Near-edge X-ray absorption fine structure of DNA nucleobases thin film in the nitrogen and oxygen K-edge region. The Journal of Physical Chemistry B 2004b; 108: 8031–8035
  • Goodhead D T. Initial events in the cellular effects of ionizing radiations: Clustered damage in DNA. International Journal of Radiation Biology 1994; 65: 7–17
  • Haraguchi K, Delaney M O, Wiederholt C J, Sambandam A, Hantosi Z, Greenberg M M. Synthesis and characterization of oligodeoxynucleotides containing formamidopyrimidine lesions and nonhydrolyzable analoges. Journal of the American Chemical Society 2002; 124: 3263–3269
  • Henke B L, Gullikson E M, Davis J C. X-ray interactions: Photoabsorption, scattering, transmission, and reflection at E = 50 to 30000 eV, Z = 1 to 92. Atomic Data and Nuclear Data Tables 1993; 54: 181–342, [see http://henke.lbl.gov/optical_constants/pert_form.html/]
  • Henle E S, Roots R, Holley W R, Chatterjee A. DNA strand breakage is correlated with unaltered base release after gamma irradiation. Radiation Research 1995; 143: 144–150
  • Henner W D, Grunberg S M, Haseltine W A. Site and structure of γ radiation-induced DNA strand breaks. The Journal of Biological Chemistry 1982; 257: 11750–11754
  • Hervé du Penhoat M A, Fayard B, Abel F, Touati A, Gobert F, Despiney-Bailly I, Ricoul M, Sabatier L, Hill M A, Goodhead D T, Chetioui A. Lethal effect of carbon K-sell photoionizations in Chinese hamster V79 cell nuclei: Experimental method and theoretical analysis. Radiation Research 1999; 151: 649–658
  • Hubbell J H. Photon mass attenuation and energy-absorption coefficients from 1 keV to 20 MeV. International Journal of Applied Radiation and Isotopes 1982; 33: 1269–1290, [see http://physics.nist.gov/PhysRefData/XrayMassCoef/tab4.html/]
  • Ito T, Saito M. Degradation of oligonucleotides by vacuum-UV radiation in solid: Roles of the phosphate group and bases. Photochemistry and Photobiology 1988; 48: 567–572
  • Ito T, Saito M. Effect of vacuum ultraviolet radiation on deoxyoligonucleotides in solids in the wavelength region around and above ionization potential – with special reference to the chain scission. Radiation Physics and Chemistry 1991; 37: 681–690
  • Jenner T J, deLara C M, O'Neill P, Stevens D L. Induction and rejoining of DNA double-strand breaks in V79-4 mammalian cells following γ- and α-irradiation. International Journal of Radiation Biology 1993; 64: 265–273
  • Kirtley S M, Mullins O C, Chen J, Elp J, George S J, Chen C T, O'Halloran T, Cramer S P. Nitrogen chemical structure in DNA and related molecules by X-ray absorption spectroscopy. Biochimica et Biophysica Acta 1992; 1132: 249–254
  • Kobayashi K, Hieda K, Maezawa Y, Furusawa Y, Suzuki M, Ito T. Effects of K-shell X-ray absorption of intracellular phosphorus on yeast cells. International Journal of Radiation Biology 1991; 59: 643–650
  • Lerman L S. A transition to a compact form of DNA in polymer solutions. Proceedings of the National Academy of Sciences of the USA 1971; 68: 1886–1890
  • Platzman R L. Superexcited states of molecules, and the primary action of ionizing radiation. The Vortex 1962; 12: 372–389
  • Pogozelski W K, Tullius T D. Oxidative strand scission of nucleic acids: Routes initiated by hydrogen abstraction from the sugar moiety. Chemical Reviews 1998; 98: 1089–1107
  • Razskazovskiy Y, Debije M G, Bernhard W A. Direct radiation damage to crystalline DNA: What is the source of unaltered base release. Radiation Research 2000; 153: 436–441
  • Razskazovskiy Y, Debije M G, Bernhard W A. Strand breaks produced in X-irradiated crystalline DNA: Influence of base sequence. Radiation Research 2003a; 159: 663–669
  • Razskazovskiy Y, Debije M G, Howerton S B, William L D, Bernhard W A. Strand breaks in X-irradiated crystalline DNA: alternating CG oligomers. Radiation Research 2003b; 160: 334–339
  • Roots R, Henle E S, Holley W R, Chatterjee A. Measurements of nucleic bases released after γ irradiation of DNA in solution in air. Radiation Research 1991; 125: 288–292
  • Saitoh Y, Nakatani T, Matsushita A, Agui A, Yoshigoe Y, Teraoka Y, Yokoya A. First results from the actinide science beamline BL23SU at SPring-8. Nuclear Instruments and Methods in Physics Research Section A 2001; 474: 253–258
  • Sluse-Goffart C, Natalis P. On the origin of the additional bands observed in the photoelectron spectra obtained with Ne or Ar resonance lines. Journal of Electron Spectroscopy and Related Phenomena 1973; 2: 215–223
  • Stuart G R, Chambers R W. Synthesis and properties of oligodeoxynucleotides with an AP site at a preselected position. Nucleic Acids Research 1987; 15: 7451–7462
  • Swarts S G, Sevilla M D, Becker D, Tokar C J, Wheeler K T. Radiation-induced DNA damage as a function of hydration. I. Release of unaltered bases. Radiation Research 1992; 129: 333–344
  • Tanaka H, Adachi M, Aoki T, Asaka T, Baron A, Daté S, Fukami K, Furukawa Y, Hanaki H, Hosoda N, et al. Stable top-up operation at SPring-8. Journal of Synchrotron Radiation 2006; 13: 378–391
  • Weinfeld M, Soderlind K-JM. 32P-postlabeling detection of radiation-induced DNA damage: Identification and estimation of thymine glycols and phosphoglycolate termini. Biochemistry 1991; 30: 1091–1097
  • Yokoya A, Akamatsu K. EPR spectrometer installed in a soft X-ray beamline at SPring-8 for biophysical studies. Nuclear Instruments and Methods in Physics Research A 2001; 467–468: 1333–1337
  • Yokoya A, Akamatsu K, Fujii K. Electron paramagnetic resonance induced by K-shell resonance excitation in DNA bases in solid state. Nuclear Instruments and Methods in Physics Research B 2003; 199: 366–369
  • Yokoya A, Akamatsu K, Fujii K, Ukai M. In situ observation of guanine radicals induced by ultrasoft X-ray irradiation around the K-edge regions of nitrogen and oxygen. International Journal of Radiation Biology 2004; 80: 833–839
  • Yokoya A, Sekiguchi T, Saitoh Y, Okane T, Nakatani T, Shimada T, Kobayashi H, Takao M, Teraoka Y, Sasaki T A. Soft X-ray beamline specialized for actinides and radioactive materials equipped with a variably polarizing undulator. Journal of Synchrotron Radiation 1998; 5: 10–16
  • Yokoya A, Watanabe R, Hara T. Single- and double-strand break in solid pBR322 DNA induced by ultrasoft X-rays at photon energies of 388, 435 and 573 eV. Journal of Radiation Research 1999; 40: 145–158

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