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Research Article

Altered association of transcriptionally active DNA with the nuclear-matrix after heat shock

Pages 875-883 | Published online: 03 Jul 2009

  • BELGRADER, P., SIEGEL, A. J. and BEREZNEY, R., 1991, A comprehensive study on the isolation and characterization of the HeLa S3 nuclear matrix. Journal of Cell Science, 98, 281-291.
  • BOUAYADI, K., VANDER LEER-VAN HOFFEN, A., BALAJEE, A. S., NATARAIAN, A. T., VANZEELAND, A. A. and MULLENDERS, L. H. F., 1997, Enzymatic activities involved in the DNA resynthesis step of nucleotide excision repair are firmly attached to chromatin. Nucleic Acids Research, 25, 1056-1063.
  • BURGMAN, P. W. J. J. and KONINGS, A. W. T., 1992, Heatinduced protein denaturation in the particulate fraction of HeLa S3 cells: effect of thermotolerance. Journal of Cellular Physiology, 153, 88-94.
  • CHU, G. L., Ross, G., WONG, R. S. L., WARTERS, R. L. and DEWEY, W. C., 1993, Content of non-histone protein in nuclei after hyperthermic treatment. Journal of Cellular Physiology, 514, 217-221.
  • COCKERILL, P. N. and GARRARD, W. T., 1986, Chromosomal loop anchorage sites appear to be evolutionarily conserved. Federation of European Biochemical Societies, 204, 5-7.
  • COOK, P. R., LANG, J., HAYDAY, A., LANIA, L., FRIED, M., CHISWELL, D. J. and WYKE, J. A., 1982, Active viral genes in transformed cells lie close to the nuclear cage. European Molecular Biology Organisation Journal, 1, 447-452.
  • COOK, P. R., 1989, The nucleoskeleton and the topology of transcription. European Journal of Biochemistry, 185, 487-501.
  • DICKSON, P., COOK, P. R. and JACKSON, D. A., 1990, Active RNA polymerase I is fixed within the nucleus of HeLa cells. European Molecular Biology Organisation Journal, 9, 2207-2214.
  • DIJKWEL, P. A., MULLENDERS, L. H. F. and WANKA, F., 1979, Analysis of the attachment of replicating DNA to a nuclear matrix in mammalian interphase nuclei. Nucleic Acid Research, 6, 219-230.
  • DIJKWEL, P. A. and HAMLIN, J. L., 1988, Matrix attachment regions are positioned near replication initiation sites, genes, and an interamplicon junction in the amplified dihydrofolate reductase domain of Chinese hamster ovary cells. Molecular Cellular Biology, 8, 5398-5409.
  • DWARAKANATH, B. S., WALLEN, C. A., ST CLAIR, D. K. and WHEELER, K. T., 1991, Characterization of nuclear matrices prepared without salt extraction. Analytical Biochemistry, 198, 68-74.
  • CASSER, S. M. and LAEMMLI, U. K., 1986, The organisation of chromatin loops: characterization of a scaffold attachment site. European Molecular Biology Organisation Journal, 5, 511-518.
  • GASSER, S. M., AMATI, B. B., CARDENAS, M. E. and HOFMANN, J. F. X., 1989, Studies on scaffold attachment sites and their relation to genome function. International Review Cytology, 119, 57-96.
  • HIGASHIKUBO, R. and ROTI Ron, J. L., 1993, Alterations in nuclear protein mass and macro-molecular synthesis following heat shock. Radiation Research, 134, 193-201.
  • IZAURRALDE, E., MIRKOVITCH, J. and LAEMMLI, U. K., 1988, Interaction of DNA with nuclear scaffolds in vitro. Journal of Molecular Biology, 200, 111-125.
  • JACKSON, D. A., DICKINSON, P. and COOK, P. R., 1990, Attachment of DNA to the nucleoskeleton of HeLa cells examined using physiological conditions. Nucleic Acids Research, 12, 1863-1874.
  • KAMPINGA, H. H., 1993, Thermotolerance in mammalian cells. Journal of Cell Science, 104, 11-17.
  • KAMPINGA, H. H., BRUNSTING, J. F. and KONINGS, A. W. T., 1992, Acquisition of thermotolerance induced by heat and arsenite in HeLa S3 cells: multiple pathways to induce tolerance? Journal of Cellular Physiology, 150, 406-415.
  • KAMPINGA, H. H., MULLENDERS, L. H. F. and KONINGS, A. W. T., 1988, Effect of hypothermia on DNA loopsize in HeLa S3 cells. International Journal of Radiation Biology, 53, 291-300.
  • KAMPINGA, H.H., TURKEL-UYGUR, N., ROTI Ron, J. L. and KONINGS, A. W. T., 1989b, The relationship of increased nuclear protein content induced by hypothermia to killing of HeLa cells. Radiation Research, 117, 511-522.
  • KAMPINGA, H.H., WRIGHT, W. D., KONINGS, A. W. T. and ROTI ROTI, J. L., 1989a, Changes in the structure of nucleoids isolated from heat-shocked HeLa cells. International Journal of Radiation Biology, 56, 369-382.
  • KOEHLER, D. R. and HANAWALT, P. C., 1996, Recruitment of damaged DNA to the nuclear matrix in hamster cells following ultraviolet irradiation. Nucleic Acids Research, 24, 2877-2884.
  • LEADON, S. A. and COOPER, P. K., 1993, Preferential repair of ionizing radiation-induced damage in the transcribed strand of an active human gene is defective in Cockayne syndrome. Proceedings of the National Academy of Sciences, USA, 90, 10499-10503.
  • LEPOCK, J. R., 1987, Membrane lipids and proteins. In K. J. Henle (ed.), Thermotolerance (Boca Raton: CRC Press), II, pp. 47-82.
  • MIRKOVITCH, J., MIRAULT, M. E. and LAEMMLI, U. K., 1984, Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold. Cell, 39, 223-232.
  • MULLENDERS, L. H. F., VAN KESTEREN, A. C., BUSSMANN, C. J. M., VANZEELAND, A. A. and NATARAJAN, A. T., 1986, Distribution of u.v.-induced repair events in higher-order chromatin loops in human and hamster fibroblasts. Carcinogeaesis, 7, 995-1002.
  • NELSON, W. G., PIENTA, K. J., BARRACK, E. R. and COFFEY, D. S., 1986, The role of the nuclear matrix in the organization and function of DNA. Annual Reviews Biophysical Chemistry, 15, 457-475.
  • PHI-VAN, L. and STRATLING, W. H., 1988, The matrix attachment regions of the chicken lysozyme gene co-map with the boundaries of the chromatin domain. European Molecular Biology Organisation Journal, 7, 655-664.
  • RAZIN, S. V. and YAROVAYA, O. V., 1985, Initiated complexes of RNA polymerase II are concentrated in the nuclear skeleton associated DNA. Experimental Cell Research, 158, 273-275.
  • RAZIN, S. V., YAROVAYA, O. V. and GEORGIEV, G. P., 1985, Low ionic strength extraction of nuclease-treated nuclei destroys the attachment of transcriptionally active DNA to the nuclear skeleton. Nucleic Acids Research, 13, 7427-7444.
  • ROBINSON, S. I., NELKIN, B. D. and VOGELSTEIN, B., 1982, The ovalbumin gene is associated with the nuclear matrix of chicken oviduct cells. Cell, 28, 99-106.
  • ROTI ROTI, J. L. and WINWARD, R. T., 1978, The effects of hypothermia on the protein-to-DNA ratio of isolated HeLa cells chromatin. Radiation Research, 74, 159-169.
  • ROTI ROTI, J. L. and PAINTER, R. B., 1982, Effects of hyperthermia on the sedimentation of nucleoids from HeLa cells in sucrose gradients. Radiation Research, 89, 166-175.
  • ROTI ROTI, J. L., WRIGHT, W. D., HIGASHIKUBO, R. and DETHLEFSEN, L. A., 1985, DNase I sensitivity of nuclear DNA measured by flow cytometry. Cytametry, 6, 101-108.
  • SAKKERS, R. J., FILON, A. R., BRUNSTING, J. F., KAMPINGA, H.H., MULLENDERS, L. H. F. and Konings, A. W. T., 1993, Heat-shock treatment selectively affects induction and repair of cyclobutane pyrimidine dimers in transcriptionally active genes in ultraviolet-irradiated human fibroblasts. Radiation Research, 135, 343-350.
  • SAKKERS R. J., FILON, A. R., KAMPINGA, H. H., KONINGS, A. W. T. and MULLENDERS, L. H. F., 1995a, Repair of UV-induced pyrimidine 6-4 pyrimidone photoproducts is selectively inhibited in transcriptionally active genes after heat treatment of human fibroblasts. International Journal of Radiation Biology, 5, 495-499.
  • SAKKERS, R. J., FILON, A. R., BRUNSTING, J. F., KAMPINGA, H.H., KONINGS, A. W. T. and MULLENDERS, L. H. F., 1995b, Selective inhibition of repair of active genes by hypothermia is due to inhibition of global and transcription coupled repair pathways. Carcinogenesis, 16, 743-748.
  • TOMASOVIC, S. P., TURNER, G. N. and DEWEY, W. C. 1978 Effects of hypothermia on non-histone proteins isolated with DNA. Radiation Research, 73, 535-552.
  • VANH OFFEN, A, NATARAJAN, A. T., MAYNE, L. V., VANZEELAND,A. A., MULLENDERS, L. H. F. and VENEMAJ., 1993, Deficient repair of the transcribed strand of active genes in Cockayne's syndrome cells. Nucleic Acids Research, 21, 5890-5895.
  • VENEMA, J., VAN HOFFEN, A., KARCAGI, V., NATARAJAN, A. T., VANZEELAND, A. A. and MULLENDERS, L. H. F., 1991, Xeroderma pigmentosum complementation group C cells remove pyrimidine dimers selectively from the transcribed strand of active genes. Molecular Cellular Biology, 11, 4128-4134.
  • WARTERS, R. L. and ROTI Ron, J. L., 1978, Production and excision of 5',6'-dihydroxydihydrothymine type products in the DNA of preheated cells. International Journal of Radiation Biology, 34, 381-384.
  • WARTERS, R. L., 1988, Hyperthermia blocks DNA processing at the nuclear matrix. Radiation Research, 115, 258-272.
  • WHEELER, K. T. and WARTERS, R. L., 1982, Influence of heat on the chromatin structure in HeLa nuclei. Radiation Research, 90, 205-215.
  • WRIGHT, W. D., HIGASHIKUBO, R. and ROTI ROTI, J. L., 1989, Flow cytometric studies of the nuclear matrix. Cytometry, 10, 303-311.

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