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Research Article

Molecular Biology and DNA Microarray Technology for Microbial Quality Monitoring of Water

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Pages 145-172 | Published online: 19 Oct 2008

REFERENCES

  • Akiyoshi D. E., Dilo J., Pearson C., Chapman S., Tumwine J., Tzipori S.. 2003. Characterization of Cryptosporidium meleagridis of human origin passaged through different host species. Infect. Immun.. 71(4)1828–1832. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Alexandre I., Hamels S., Dufour S., Collet J., Zammatteo N., De, Longueville F., Gala J. L., Remacle J.. 2001. Colorimetric silver detection of DNA microarrays. Anal. Biochem.. 295(1)1–8. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Anthony R. M., Brown T. J., French G. L.. 2000. Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide array. J. Clin. Microbiol.. 38(2)781–788. [PUBMED], [INFOTRIEVE]
  • Ashbolt N. J., Grabow W. O.K., Snozzi M.. 2001. Indicators of microbial water quality, in Water Quality: Guidelines, Standards and Health (World Health Organization). Fewtrell L., Bartram J., LondonUK, IWA Publishing. 289–316
  • Battaglia C., Salani G., Consolandi C., Bernardi L. R., De, Bellis G.. 2000. Analysis of DNA microarrays by non-destructive fluorescent staining using SYBR green II. Biotechniques. 29(1)78–81. [PUBMED], [INFOTRIEVE]
  • Beaucage S. L.. 2001. Strategies in the preparation of DNA oligonucleotide arrays for diagnostic applications. Curr. Med. Chem.. 8(10)1213–1244. [PUBMED], [INFOTRIEVE]
  • Becker P. M., Wand H., Martius G. G., Weissbrodt E., Stottmeister U.. 1998. Functional and structural successions in arbitrary samples of heterotrophic bacteria during aerobic treatments of lignite-carbonization wastewater in in situ enclosures. Can. J. Microbiol.. 44(3)211–220. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Beekwilder J., Nieuwenhuizen R., Havelaar A. H., van, Duin J.. 1996. An oligonucleotide hybridization assay for the identification and enumeration of F-specific RNA phages in surface water. J. Appl. Bacteriol.. 80(2)179–186. [PUBMED], [INFOTRIEVE]
  • Bej A. K., Di, Cesare J. L., Haff L., Atlas R. M.. 1991b. Detection of Escherichia coli and Shigella spp. in water by using the polymerase reaction and gene probes for uid. Appl. Environ. Microbiol.. 57(4)1013–1017. [PUBMED], [INFOTRIEVE]
  • Bej A. K., Mc, Carty S. C., Atlas R. M.. 1991a. Detection of coliform bacteria and Escherichia coli by multiplex polymerase chain reaction: Comparison with defined substrate and plating mathods for water quality monitoring. Appl. Environ. Microbiol.. 57(8)2429–2432. [PUBMED], [INFOTRIEVE]
  • Bej A. K., Steffan R. J., Di, Cesare J., Haff L., Atlas R. M.. 1990. Detection of coliform bacteria in water by polymerase chain reaction and gene probes. Appl. Environ. Microbiol.. 56(2)307–314. [PUBMED], [INFOTRIEVE]
  • Bekal S., Brousseau R., Masson L., Préfontaine G., Fairbrother J., Harel J.. 2003. Rapid identification of E. coli pathotypes through virulence gene detection by DNA microarrays. J. Clin. Microbiol.. 41(5)2113–2125. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Bell K. S., Kuyukina M. S., Heidbrink S., Philp J. C., Aw D. W., Ivshina I. B., Christofi N.. 1999. Identification and environmental detection of Rhodococcus species by 16S rDNA-targeted PCR. J. Appl. Microbiol.. 87(4)472–480. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Belosludtsev Y., Iverson B., Lemeshko S., Eggers R., Wiese R., Lee S., Powdrill T., Hogan M.. 2001. DNA microarrays based on noncovalent oligonucleotide attachment and hybridization in two dimensions. Anal. Biochem.. 292(2)250–256. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Bernhardt A. E., Field K. G.. 2000. Identification of nonpoint sources of fecal pollution in coastal waters using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes. Appl. Environ. Microbiol.. 66(4)1587–1594
  • Bonhert J., Hübner B., Botzenhart K.. 2000. Rapid identification of Enterobacteriaceae using a novel 23S rRNA-targeted oligonucleotide probe. Int. J. Hyg. Environ. Health. 203: 77–82
  • Bourrain M., Achouak W., Urbain V., Heulin T.. 1999. DNA extraction from activated sludges. Curr. Microbiol.. 38: 315–319. [PUBMED], [INFOTRIEVE]
  • Bradley G., Carter J., Gaudie D., King C.. 1999. Distribution of the human faecal bacterium Bacteroides fragilis, its bacteriophages and their relationship to current sewage pollution indicators in bathing water. J. Appl. Microbiol. Symp. Supp. 85: 90S–100S
  • Brandi G., Sisti M., Giardini F., Schiavano G.-F., Albano A.. 1999. Survival ability of cytotoxic strains of motile Aeromonas spp. in different types of water. Lett. Appl. Microbiol.. 29: 211–215. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Brennhovd O., Kapperud G., Langeland G.. 1992. Survey of thermotolerant Campylobacter spp. and Yersinia spp. in three surface water sources in Norway. Int. J. Food Microbiol.. 15(3–4)327–338. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Broude N. E., Woodward K., Cavallo R., Cantor C. R., Englert D.. 2001. DNA microarrays with stem-loop DNA probes: Preparation and applications. Nucleic Acids Res. 29(19)e92, [PUBMED], [INFOTRIEVE]
  • Brousseau R., Hill J. E., Prefontaine G., Goh S. H., Harel J., Hemmingsen S. M.. 2001. Streptococcus suis serotypes characterized by analysis of chaperonin 60 gene sequences. Appl. Environ. Microbiol.. 67(10)4828–4833. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Caccio S., Pinter E., Fantini R., Mezzaroma I., Pozio E.. 2002. Human infection with Cryptosporidium felis: Case report and literature review. Emerg. Infect. Dis.. 8(1)85–86. [PUBMED], [INFOTRIEVE]
  • Call D. R., Chandler D. P., Brockman F.. 2001. Fabrication of DNA microarrays using unmodified oligonucleotide probes. Biotechniques. 30(2)368–379. [PUBMED], [INFOTRIEVE]
  • Campbell G. R., Prosser J., Glover A., Killham K.. 2001. Detection of Escherichia coli O157:H7 in soil and water using multiplex PCR. J. Appl. Microbiol.. 91: 1004–1010. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Cangelosi G. A., Brabant W. H.. 1997. Depletion of pre-16S rRNA in starved Escherichia coli cells. J. Bacteriol.. 179(14)4457–4463. [PUBMED], [INFOTRIEVE]
  • Chandler D. P., Brown J., Call D. R., Wunschel S., Grate J. W., Holman D. A., Olson L., Stottlemyre M. S., Bruckner-Lea C. J.. 2001. Automated immunomagnetic separation and microarray detection of E. coli O157:H7 from poultry carcass rinse. Int. J. Food Microbiol.. 70: 143–154. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Chauret C., Springthorpe S., Sattar S.. 1999. Fate of Cryptosporidium oocysts, Giardia cysts, and microbial indicators during wastewater treatment and anaerobic sludge digestion. Can. J. Microbiol.. 45(3)257–262. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Chizhikov V., Rasooly A., Chumakov K., Levy D. D.. 2001. Microarray analysis of microbial virulence factors. Appl. Environ. Microbiol.. 67(7)3258–3263. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Cho J. C., Kim S. J.. 1999. Viable, but non-culturable, state of a green fluorescence protein-tagged environmental isolate of Salmonella typhi in groundwater and pond water. FEMS Microbiol. Lett.. 170(1)257–264. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Chung E., Aldom J. E., Carreno R. A., Chagla A. H., Kostrzynska M., Lee H., Palmateer G., Trevors J. T., Unger S., Xu R., De, Grandis S. A.. 1999. PCR-based quantitation of Cryptosporidium parvum in municipal water samples. J. Microbiol. Meth.. 38: 119–130
  • Cirillo J. D.. 1999. Exploring a novel perspective on pathogenic relationships. Trends Microbiol.. 7(3)96–98. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Cohen N. D., Martin L. J., Simpson R. B., Wallis D. E., Neibergs H. L.. 1996. Comparison of polymerase chain reaction and microbiological culture for detection of Salmonellae in equine feces and environmental samples. Am. J. Vet. Res.. 57(6)780–786. [PUBMED], [INFOTRIEVE]
  • Cooper R. C., Danielson R. E.. 1997; Detection of bacterial pathogens in wastewater and sludge, in Manual of Environmental Microbiology, Hurst C. J., Knudsen G. R., McInerney M. J., Stetzenbach L. D., Walter M. V., Washington, D.C., ASM Press. 222–230
  • Davies C. M., Long J. A., Donald M., Ashbolt N. J.. 1995. Survival of fecal microorganisms in marine and freshwater sediments. Appl. Environ. Microbiol.. 61(5)1888–1896. [PUBMED], [INFOTRIEVE]
  • Degrange V., Bardin R.. 1995. Detection and counting of Nitrobacter populations in soil by PCR. Appl. Environ. Microbiol.. 61(6)2093–2098. [PUBMED], [INFOTRIEVE]
  • Deisingh A. K., Thompson M.. 2002. Detection of infectious and toxigenic bacteria. Analyst. 127: 567–581. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Delabre K., Cervantes P., Lahoussine V., Roubin M.-R. d.. 1998. Detection of viable pathogenic bacteria from water samples by PCR, OECD Workshop INTERLAKEN'98 on Molecular Methods for Safe Drinking Water
  • Dennis P., Edwards E. A., Liss S. N., Fulthorpe R.. 2003. Monitoring gene expression in mixed microbial communities by using DNA microarrays. Appl. Environ. Microbiol.. 69(2)769–778. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Di, Giovanni G. D., Hashemi F. H., Shaw N. J., Abrams F. A., Le, Chevallier M. W., Abbaszadegan M.. 1999. Detection of infectious Cryptosporidium parvum oocysts in surface and filter backwash water samples by immunomagnetic separation and integrated cell culture-PCR. Appl. Environ. Microbiol.. 65(8)3427–3432. [PUBMED], [INFOTRIEVE]
  • Donlan R. M.. 2002. Biofilms: Microbial life on surfaces. Emerg. Infect. Dis.. 8(9)881–890. [PUBMED], [INFOTRIEVE]
  • Dowd S. E., Gerba C. P., Pepper I. L.. 1998. Confirmation of the human-pathogenic microsporidia Enterocytozoon bieneusi, Encephalitozoon intestinalis and Vittaforma corneae in water. Appl. Environ. Microbiol.. 64(9)3332–3335. [PUBMED], [INFOTRIEVE]
  • Eisen M. B., Brown P. O.. 1999. DNA arrays for analysis of gene expression. Meth. Enzymol.. 303: 179–205. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Enroth H., Engstrand L.. 1995. Immunomagnetic separation and PCR for detection of Helicobacter pylori in water and stool specimens. J. Clin. Microbiol.. 33(8)2162–2165. [PUBMED], [INFOTRIEVE]
  • Farnleitner A. H., Kreuzinger N., Kavka G. G., Grillenberger S., Rath J., Mach R. L.. 2000. Simultaneous detection and differentiation of Escherichia coli populations from environmental freshwaters by means of sequence variations in a fragment of the beta-D-glucuronidase gene. Appl. Environ. Microbiol.. 66(4)1340–1346. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Fayer R., Morgan U., Upton S. J.. 2000. Epidemiology of Cryptosporidium: Transmission, detection and identification. Int. J. Parasitol.. 30(12–13)1305–1322. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Ferguson C. M., Coote B. G., Ashbolt N. J., Stevenson I. M.. 1996. Relationships between indicators, pathogens and water quality in an estuarine system. Wat. Res.. 30: 2045–2054
  • Feriotto G., Corradini R., Sforza S., Bianchi N., Mischiati C., Marchelli R., Gambari R.. 2001. Peptide nucleic acids and biosensor technology for real-time detection of the cystic fibrosis W1282X mutation by surface plasmon resonance. Laboratory Investigation. 81(10)1415–1427. [PUBMED], [INFOTRIEVE]
  • Fiksdal L., Maki J. S., La, Croix S. J., Staley J. T.. 1985. Survival and detection of Bacteroides spp., prospective indicator bacteria. Appl. Environ. Microbiol.. 49(1)148–150. [PUBMED], [INFOTRIEVE]
  • Fodor S. P., Read J. L., Pirrung M. C., Stryer L., Lu A. T., Solas D.. 1991. Light-directed, spatially addressable parallel chemical synthesis. Science. 251(4995)767–773. [PUBMED], [INFOTRIEVE]
  • Franssen, val Hal, N. L.W., Vorst O., Kramer E., Hall R. D., Keijer J.. 2002. Factors influencing cDNA microarray hybridization on silylated glass slides. Anal. Biochem.. 308(1)5–17
  • Fricker E. J., Fricker C. R.. 1994. Application of the polymerase chain reaction to the identification of Escherichia coli and coliforms in water. Lett. Appl. Microbiol.. 19(1)44–46. [PUBMED], [INFOTRIEVE]
  • Furuse K.. 1987; Distribution of coliphages in the environment: General considerations, in Phage Ecology, Goyal S. M., Gerba C. P., Bitton G.. Wiley Interscience. 87–124
  • Gabutti G., De, Donno A., Bagordo F., Montagna M. T.. 2000. Comparative survival of faecal and human contaminants and use of Staphylococcus aureus as an effective indicator of human pollution. Mar. Poll. Bul.. 40: 697–700
  • Gavini F., Pourcher A. M., Neut C., Monget D., Romond C., Oger C., Izard D.. 1991. Phenotypic differentiation of bifidobacteria of human and animal origins. Int. J. Syst. Bacteriol.. 41(4)548–557. [PUBMED], [INFOTRIEVE]
  • Geldreich E., Kenner B.. 1969. Concepts of fecal Streptococci in stream pollution. Journal of the Water Pollution Control Federation. 41(8)336–352
  • Gingeras T. R., Ghandour G., Wang E. G., Berno A., Small P. M., Drobniewski F., Alland D., Desmond E., Holodniy M., Drenkow J.. 1998. Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays. Genome Res.. 8(5)435–448. [PUBMED], [INFOTRIEVE]
  • Goni-Urriza M., Capdepuy M., Arpin C., Raymond N., Caumette P., Quentin C.. 2000. Impact of an urban effluent on antibiotic resistance of riverine Enterobacteriaceae and Aeromonas spp. Appl. Environ. Microbiol.. 66(1)125–132. [PUBMED], [INFOTRIEVE]
  • Goyal S. M., Zerda K. S., Gerba C. P.. 1980. Concentration of coliphages from large volumes of water and wastewater. Appl. Environ. Microbiol.. 39(1)85–91. [PUBMED], [INFOTRIEVE]
  • Grabow W.. 1996. Waterborne diseases: Update on water quality assessment and control. Water SA. 22(2)193–202
  • Greer C. W., Whyte L. G., Lawrence J. R., Masson L., Brousseau R.. 2001. Genomics technologies for environmental science. Environ. Sci. Technol.. 35(17)364A–370A
  • Griffin D. W., Gibson C. J., 3rd, Lipp E. K., Riley K., Paul J. H., 3rd, Rose J. B.. 1999. Detection of viral pathogens by reverse transcriptase PCR and of microbial indicators by standard methods in the canals of the Florida Keys. Appl. Environ. Microbiol.. 65(9)4118–4125. [PUBMED], [INFOTRIEVE]
  • Guyot K., Follet-Dumoulin A., Lelievre E., Sarfati C., Rabodonirina M., Nevez G., Cailliez J. C., Camus D., Dei-Cas E.. 2001. Molecular characterization of Cryptosporidium isolates obtained from humans in France. J. Clin. Microbiol.. 39(10)3472–3480. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Gyllenberg H., Niemela S., Sormunen T.. 1960. Survival of bifidobacteria in water as compared with that of coliforms bacteria and enterococci. Appl. Microbiol.. 40: 697–700
  • Harwood V. J., Whitlock J., Withington V.. 2000. Classification of antibiotic resistance patterns of indicator bacteria by discriminant analysis: Use in predicting the source of fecal contamination in subtropical waters. Appl. Environ. Microbiol.. 66(9)3698–3704. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Havelaar A. H., Pot-Hogeboom W. M., Furuse K., Pot R., Hormann M. P.. 1990. F-specific RNA bacteriophages and sensitive host strains in faeces and wastewater of human and animal origin. J. Appl. Bacteriol.. 69(1)30–37. [PUBMED], [INFOTRIEVE]
  • Havelaar A. H., van, Olphen M., Drost Y. C.. 1993. F-specific RNA bacteriophages are adequate model organisms for enteric viruses in fresh water. Appl. Environ. Microbiol.. 59(9)2956–2962. [PUBMED], [INFOTRIEVE]
  • Henke L., Krull U. J.. 1999. Immobilization technologies used for nucleic acid biosensors: A review. Can. J. Anal. Sci. Spect.. 44(2)61–70
  • Hervio-Heath D., Colwell R. R., Derrien A., Robert-Pillot A., Fournier J. M., Pommepuy M.. 2002. Occurrence of pathogenic vibrios in coastal areas of France. J. Appl. Microbiol.. 92(6)1123–1135. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Hill J. E., Seipp R. P., Betts M., Hawkins L., Van, Kessel A. G., Crosby W. L., Hemmingsen S. M.. 2002. Extensive profiling of a complex microbial community by high-throughput sequencing. Appl. Environ. Microbiol.. 68(6)3055–3066. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Holben W. E., Jansson J. K., Chelm B. K., Tiedje J. M.. 1988. DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl. Environ. Microbiol.. 54(3)703–711
  • Hrudey S. E., Huck P. M., Payment P., Gillham R. W., Hrudey E. J.. 2002. Walkerton: Lessons learned in comparison with waterborne outbreaks in the developed world. J. Environ. Eng. Sci.. 1(6)397–407
  • Hsu F. C., Shieh Y. S., van, Duin J., Beekwilder M. J., Sobsey M. D.. 1995. Genotyping male-specific RNA coliphages by hybridization with oligonucleotide probes. Appl. Environ. Microbiol.. 61(11)3960–3966. [PUBMED], [INFOTRIEVE]
  • Hübner I., Steinmetz I., Obst U., Giebel D., Bitter-suermann D.. 1992. Rapid determination of members of the family Enterobacteriaceae in drinking water by an immunological assay using a monoclonal antibody against enterobacterial common antigen. Appl. Environ. Microbiol.. 58(9)3187–3191
  • Hughes T. R., Mao M., Jones A. R., Burchard J., Marton M. J., Shannon K. W., Lefkowitz S. M., Ziman M., Schelter J. M., Meyer M. R., Kobayashi S., Davis C., Dai H. Y., He Y. D.D., Stephaniants S. B., Cavet G., Walker W. L., West A., Coffey E., Shoemaker D. D., Stoughton R., Blanchard A. P., Friend S. H., Linsley P. S.. 2001. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat. Biotechnol.. 19(4)342–347. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Hulten K., Enroth H., Nystrom T., Engstrand L.. 1998. Presence of Helicobacter species DNA in Swedish water. J. Appl. Microbiol.. 85(2)282–286. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Isaac-Marquez A. P., Lezama-Davila C. M., Eslava-Campos C., Navarro-Ocana A., Cravioto-Quintana A.. 1998. Serotypes of Vibrio cholerae non-O1 isolated from water supplies for human consumption in Campeche, Mexico and their antibiotic susceptibility pattern. Mem. I Oswaldo Cruz. 93: 17–22
  • Islam M. S., Hasan M. K., Miah M. A., Sur G. C., Felsenstein A., Venkatesan M., Sack R. B., Albert M. J.. 1993. Use of the polymerase chain reaction and fluorescent-antibody methods for detecting viable but nonculturable Shigella dysenteriae type 1 in laboratory microcosms. Appl. Environ. Microbiol.. 59(2)536–540. [PUBMED], [INFOTRIEVE]
  • Jagals P., Grabow W. O.K., de, Villers J. C.. 1995. Evaluation of indicators for assessment of human and animal faecal pollution of surface run-off. Wat. Sci. Tech.. 31: 235–241
  • Jofre J., Bosch A., Lucena F., Girones R., Tartera C.. 1986. Evaluation of Bacteroides fragilis as indicators of the cirological quality of water. Wat. Sci. Tech.. 18: 167–173
  • Josephson K. L., Gerba C. P., Pepper I. L.. 1993. Polymerase chain reaction detection of nonviable bacterial pathogens. Appl. Environ. Microbiol.. 59(10)3513–3515. [PUBMED], [INFOTRIEVE]
  • Kane M. D., Jatkoe T. A., Stumpf C. R., Lu J., Thomas J. D., Madore S. J.. 2000. Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays. Nucleic Acids Res.. 28(22)4552–4557. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Kapperud G.. 1991. Yersinia enterocolitica in food hygiene. Int. J. Food Microbiol.. 12(1)53–65. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Kelly J. J., Chernov B. K., Tovstanovsky I., Mirzabekov A. D., Bavykin S. G.. 2002. Radical-generating coordination complexes as tools for rapid and effective fragmentation and fluorescent labeling of nucleic acids for microchip hybridization. Anal. Biochem.. 311(2)103–118. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Kfir R., Du, Preez M., Genthe B.. 1993. The use of monoclonal antibodies for the detection of faecal bacteria in water. Wat. Sci. Tech.. 27: 257–260
  • Kreader C. A.. 1995. Design and evaluation of Bacteroides DNA probes for the specific detection of human fecal pollution. Appl. Environ. Microbiol.. 61(4)1171–1179. [PUBMED], [INFOTRIEVE]
  • Kricka L. J.. 2002. Stains, labels and detection strategies for nucleic acids assays. Ann. Clin. Biochem. 39, Part 2. 114–129. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Lang A. L., Tsai Y.-L., Mayer C. L., Patton K. C., Palmer C. J.. 1994. Multiplex PCR for detection of the heat-labile toxin gene and shiga-like toxin I and II genes in Escherichia coli isolated from natural waters. Appl. Environ. Microbiol.. 60(9)3145–3149. [PUBMED], [INFOTRIEVE]
  • Laursen E., Mygind O., Rasmussen B., Ronne T.. 1994. Gastroenteritis: A waterborne outbreak affecting 1600 people in a small Danish town. J. Epidemiol. Community Health. 48(5)453–458. [PUBMED], [INFOTRIEVE]
  • Leclerc H., Schwartzbrod L., Dei-Cas E.. 2002. Microbial agents associated with waterborne diseases. Crit. Rev. Microbiol.. 28(4)371–409. [PUBMED], [INFOTRIEVE]
  • Lee H. A., Wyatt G. M., Braham S., Morgan M. R.. 1989. Rapid enzyme-linked immunosorbent assay for the detection of Salmonella enteritidis in eggs. Food Agric. Immunol.. 1: 89–98
  • Lemarchand K., Lebaron P.. 2003. Occurrence of Salmonella spp and Cryptosporidium spp in a French coastal watershed: Relationship with fecal indicators. FEMS Microbiol. Lett.. 218(1)203–209. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Lemarchand K., Parthuisot N., Catala P., Lebaron P.. 2001. Comparative assessment of epifluorescence microscopy, flow cytometry and solid-phase cytometry used in the enumeration of specific bacteria in water. Aquat. Microb. Ecol.. 25(3)301–309
  • Lemeshko S. V., Powdrill T., Belosludtsev Y. Y., Hogan M.. 2001. Oligonucleotides form a duplex with non-helical properties on a positively charged surface. Nucleic Acids Res.. 29(14)3051–3058. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Leung K., Topp E.. 2001. Bacterial community dynamics in liquid swine manure during storage: Molecular analysis using DGGE/PCR of 16S rDNA. FEMS Microbiol. Ecol.. 38: 169–177
  • Lindroos K., Liljedahl U., Raitio M., Syvänen A. C.. 2001. Minisequencing on oligonucleotide microarrays: Comparison of immobilisation chemistries. Nucleic Acids Res. 29(13)e69, [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Lipp E. K., Farrah S. A., Rose J. B.. 2001. Assessment and impact of microbial fecal pollution and human enteric pathogens in a coastal community. Mar. Poll. Bul.. 42(4)286–293
  • Lizardi P. M., Huang X. H., Zhu Z. R., Bray Ward P., Thomas D. C., Ward D. C.. 1998. Mutation detection and single-molecule counting using isothermal rolling-circle amplification. Nat. Genet.. 19(3)225–232. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Loge F. J., Emerick R. W., Thompson D. E., Nelson D. C., Darby J. L.. 1999. Development of a fluorescent 16S rRNA oligonucleotide probe specific to the family Enterobacteriaceae. Wat. Environ. Res.. 71(1)75–83
  • Lu Y., Redlinger T. E., Avita R., Galindo A., Goodman K.. 2002. Isolation and genotyping of Helicobacter pylori from untreated municipal wastewater. Appl. Environ. Microbiol.. 68(3)1436–1439. [CROSSREF], [PUBMED]
  • Mac, Kenzie W. R., Hoxie N. J., Proctor M. E., Gradus M. S., Blair K. A., Peterson D. E., Kazmierczak J. J., Addiss D. G., Fox K. R., Rose J. B., Davis J. P.. 1994. A massive outbreak in Milwaukee of Cryptosporidium infection transmitted through the public water supply. N. Engl. J. Med.. 331(3)161–167. [PUBMED]
  • Mara D. D., Oragui J. I.. 1983. Sorbitol-fermenting bifidobacteria as specific indicators of human faecal pollution. J. Appl. Bacteriol.. 55(2)349–357. [PUBMED]
  • Martin R. R., James D., Levesque C. A.. 2000. Impacts of molecular diagnostic technologies on plant disease management. Annu. Rev. Phytopathol.. 38: 207–239. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Masters C. I., Shallcross J. A., Mackey B. M.. 1994. Effect of stress treatments on the detection of Listeria monocytogenes and enterotoxigenic Escherichia coli by the polymerase chain reaction. J. Appl. Bacteriol.. 77(1)73–79. [PUBMED], [INFOTRIEVE]
  • Mathieu-Daudé F., Welsh J., Vogt T., Mc, Clelland M.. 1996. DNA rehybridization during PCR: The ‘C(O)t effect’ and its consequences. Nucleic Acids Res.. 24(11)2080–2086
  • Mc, Cuin R. M., Clancy J. L.. 2003. Modifications to United States Environmental Protection Agency methods 1622 and 1623 for detection of Cryptosporidium oocysts and Giardia cysts in water. Appl. Environ. Microbiol.. 69(1)267–274. [PUBMED], [INFOTRIEVE]
  • Mc, Feters G. A., Bissonnette G. K., Jezeski J. J., Thomson C. A., Stuart D. G.. 1974. Comparative survival of indicator bacteria and enteric pathogens in well water. Appl. Microbiol.. 27(5)823–829. [PUBMED], [INFOTRIEVE]
  • Mc, Killip J. L., Jaykus L. A., Drake M.. 1998. rRNA stability in heat-killed and UV-irradiated enterotoxigenic Staphylococcus aureus and Escherichia coli O157:H7. Appl. Environ. Microbiol.. 64(11)4264–4268. [PUBMED], [INFOTRIEVE]
  • Mc, Lellan S. L., Daniels A. D., Salmore A. K.. 2003. Genetic characterization of Escherichia coli populations from host sources of fecal pollution by using DNA fingerprinting. Appl. Environ. Microbiol.. 69(5)2587–2594. [PUBMED], [INFOTRIEVE]
  • Merk S., Neubauer H., Meyer H., Greiser-Wilke I.. 2001. Comparison of different methods for the isolation of Burkholderia cepacia DNA from pure cultures and waste water. Int. J. Hyg. Environ. Health. 204(2–3)127–131. [PUBMED], [INFOTRIEVE]
  • Miller D. N., Bryant J. E., Madsen E. L., Ghiorse W. C.. 1999. Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Appl. Environ. Microbiol.. 65(11)4715–4724. [PUBMED]
  • Mittelman M. W., Habash M., Lacroix J.-M., Khoury A. E., Krajden M.. 1997. Rapid detection of Enterobacteriaceae in urine by fluorescent 16S rRNA in situ hybridization on membrane filters. J. Microbiol. Meth.. 30: 153–160
  • Moe C. L.. 1997. Waterborne transmission of infectious agents, in Manual of Environmental Microbiology. Hurst C. J., Knudsen G. R., McInerney M. J., Stetzenbach L. D., Walter M. V., Washington, D.C., ASM Press. 184–194
  • Moreira D.. 1998. Efficient removal of PCR inhibitors using agarose-embedded DNA preparations. Nucleic Acids Res.. 26(13)3309–3310. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Morgan-Ryan U. M., Fall A., Ward L. A., Hijjawi N., Sulaiman I., Fayer R., Thompson R. C., Olson M., Lal A., Xiao L.. 2002. Cryptosporidium hominis n. sp. (Apicomplexa: Cryptosporidiidae) from Homo sapiens. J. Eukaryot. Microbiol.. 49(6)433–440. [PUBMED], [INFOTRIEVE]
  • Morinigo M. A., Munoz M. A., Cornax R., Martinez-Manzanares E., Borrego J. J.. 1992. Presence of indicators and Salmonella in natural waters affected by outfall wastewater discharges. Wat. Sci. Tech.. 25: 1–8
  • Morinigo M. C., R, Munoz M. A., Romero P., Borrego J. J.. 1990. Relationships between Salmonella spp and indicator microorganisms in polluted natural waters. Wat. Res.. 24(1)117–120
  • Nallur G., Luo C. H., Fang L. H., Cooley S., Dave V., Lambert J., Kukanskis K., Kingsmore S., Lasken R., Schweitzer B.. 2001. Signal amplification by rolling circle amplification on DNA microarrays. Nucleic Acids Res. 29(23)E118, [CROSSREF], [PUBMED]
  • Nataro J. P., Kaper J. B.. 1998. Diarrheagenic Escherichia coli. Clin. Microbiol. Rev.. 11(1)142–201. [PUBMED], [INFOTRIEVE]
  • Ng S. P., Tsui C. O., Roberts D., Chau P. Y., Ng M. H.. 1996. Detection and serogroup differentiation of Salmonella spp. in food within 30 hours by enrichment-immunoassay with a T6 monoclonal antibody capture enzyme-linked immunosorbent assay. Appl. Environ. Microbiol.. 62(7)2294–2302. [PUBMED], [INFOTRIEVE]
  • Noguchi M., Hiwatashi T., Mizuno Y., Minematsu M.. 2002. Pollutant runoff from non-point sources and its estimation by runoff models. Wat. Sci. Tech.. 46(11–12)407–412
  • Obst U., Hübner I., Wecker M., Bitter-suermann D.. 1989. Immunological method using monoclonal antibodies to detect Enterobacteriaceae in drinking water. Aqua. 38: 136–142
  • Oerther D. B., Pernthaler J., Schramm A., Amann R., Raskin L.. 2000. Monitoring precursor 16S rRNAs of Acinetobacter spp. in activated sludge wastewater treatment systems. Appl. Environ. Microbiol.. 66(5)2154–2165. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Olson M. E., Thorlakson C. L., Deselliers L., Morck D. W., Mc, Allister T. A.. 1997. Giardia and Cryptosporidium in Canadian farm animals. Vet. Parasitol.. 68: 375–381. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Olsvik O., Popovic T., Skjerve E., Cudjoe K. S., Hornes E., Ugelstad J., Uhlén M.. 1994. Magnetic separation techniques in diagnostic microbiology. Clin. Microbiol. Rev.. 7(1)43–54. [PUBMED]
  • Ong C. S., Eisler D. L., Alikhani A., Fung V. W., Tomblin J., Bowie W. R., Isaac-Renton J. L.. 2002. Novel Cryptosporidium genotypes in sporadic cryptosporidiosis cases: First report of human infections with a cervine genotype. Emerg. Infect. Dis.. 8(3)263–268. [PUBMED], [INFOTRIEVE]
  • Payment P., Berte A., Prévost M., Ménard B., Barbeau B.. 2000. Occurrence of pathogenic microorganisms in the Saint Lawrence river (Canada) and comparison of health risks for populations using it as their source of drinking water. Can. J. Microbiol.. 46: 565–576. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Petit F., Craquelin S., Guespin-Michel J., Buffet-Janvresse C.. 1999. Nucleic acid extraction from polluted estuarine water for detection of viruses and bacteria by PCR and RT-PCR analysis. Res. Microbiol.. 150: 143–151. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Pickup R. W.. 1991. Development of molecular methods for the detection of specific bacteria in the environment. J. Gen. Microbiol.. 137: 1009–1019
  • Polo F., Figueras M. J., Inza I., Sala J., Fleisher J. M., Guarro J.. 1998. Relationship between presence of Salmonella and indicators of faecal pollution in aquatic habitats. FEMS Microbiol. Lett.. 160(2)253–256. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Polz M. F., Cavanaugh C. M.. 1998. Bias in template-to-product ratios in multitemplate PCR. Appl. Environ. Microbiol.. 64(10)3724–3730. [PUBMED], [INFOTRIEVE]
  • Pongrac J., Middleton F. A., Lewis D. A., Levitt P., Mirnics K.. 2002. Gene expression profiling with DNA microarrays: Advancing our understanding of psychiatric disorders. Neurochem. Res.. 27(10)1049–1063. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Prescott A. M., Fricker C. R.. 1999. Use of PNA oligonucleotides for the in situ detection of Escherichia coli in water. Mol. Cell. Probe.. 13(4)261–268
  • Proudnikov D., Timofeev E., Mirzabekov A.. 1998. Immobilization of DNA in polyacrylamide gel for the manufacture of DNA and DNA-oligonucleotide microchips. Anal. Biochem.. 259(1)34–41. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Puig A., Queralt N., Jofre J., Araujo R.. 1999. Diversity of Bacteroides fragilis strains in their capacity to recover phages from human and animal wastes and from fecally polluted wastewater. Appl. Environ. Microbiol.. 65(4)1772–1776. [PUBMED], [INFOTRIEVE]
  • Pyle B. H., Broadaway S. C., Mc, Feters G. A.. 1999. Sensitive detection of Escherichia coli O157:H7 in food and water by immunomagnetic separation and solid-phase laser cytometry. Appl. Environ. Microbiol.. 65(2)1966–1972. [PUBMED], [INFOTRIEVE]
  • Ramsay G.. 1998. DNA chips: State-of-the-art. Nat. Biotechnol.. 16(1)40–44. [PUBMED], [INFOTRIEVE]
  • Regnault B., Martin-Delautre S., Lejay-Collin M., Lefevre M., Grimont P. A.. 2000. Oligonucleotide probe for the visualization of Escherichia coli/Escherichia fergusonii cells by in situ hybridization: Specificity and potential applications. Res. Microbiol.. 151(7)521–533. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Resnick I. G., Levin M. A.. 1981. Assessment of bifidobacteria as indicators of human fecal pollution. Appl. Environ. Microbiol.. 42(3)433–438. [PUBMED], [INFOTRIEVE]
  • Reynolds K. A., Gerba C. P., Abbaszadegan M., Pepper L. L.. 2001. ICC/PCR detection of enteroviruses and hepatitis A virus in environmental samples. Can. J. Microbiol.. 47(2)153–157. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Ritter L., Solomon K., Sibley P., Hall K., Keen P., Mattu G., Linton B.. 2002. Sources, pathways, and relative risks of contaminants in surface water and groundwater: A perspective prepared for the Walkerton inquiry. J. Toxicol. Env. Heal. A. 65(1)1–142
  • Robertson L. J., Gjerde B.. 2001. Occurrence of Cryptosporidium oocysts and Giardia cysts in raw waters in Norway. Scand J. Public Health. 29(3)200–207. [PUBMED], [INFOTRIEVE]
  • Rockabrand D., Austin T., Kaiser R., Blum P.. 1999. Bacterial growth state distinguished by single-cell protein profiling: Does chlorination kill coliforms in municipal effluent?. Appl. Environ. Microbiol.. 65(9)4181–4188. [PUBMED], [INFOTRIEVE]
  • Rompre A., Servais P., Baudart J., de-Roubin M. R., Laurent P.. 2002. Detection and enumeration of coliforms in drinking water: Current methods and emerging approaches. J. Microbiol. Meth.. 49(1)31–54
  • Rose J. B.. 1997. Environmental ecology of Cryptosporidium and public health implications. Annu. Rev. Publ. Health. 18: 135–161
  • Rutkowski A. A., Sjogren R. E.. 1987. Streptococcal populations profiles as indicators of water quality. Water Air Soil Poll.. 34: 273–284
  • Sails A. D., Bolton F. J., Fox A. J., Wareing D. R.A., Greenway D. L.A.. 2002. Detection of Campylobacter jejuni and Campylobacter coli in environmental waters by PCR enzyme-linked immunosorbent assay. Appl. Environ. Microbiol.. 68(3)1319–1324. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Sargeant D.. 1999. Fecal contamination source identification methods in surface water. Washington, Washington State Department of Ecology
  • Scardovi V., Sgorbati B., Zani G.. 1971. Starch gel electrophoresis of fructose-6-phosphate phophoketolase in the genus Bifidobacterium. J. Bacteriol.. 106(3)1036–1039. [PUBMED], [INFOTRIEVE]
  • Schaffter N., Parriaux A.. 2002. Pathogenic-bacterial water contamination in mountainous catchments. Wat. Res.. 36: 131–139
  • Schaper M., Jofre J., Uys M., Grabow W. O.. 2002. Distribution of genotypes of F-specific RNA bacteriophages in human and non-human sources of faecal pollution in South Africa and Spain. J. Appl. Microbiol.. 92(4)657–667. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Schweitzer B., Kingsmore S.. 2001. Combining nucleic acid amplification and detection. Curr. Opin. Biotech.. 12(1)21–27. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Shchepinov M. S., Case Green S. C., Southern E. M.. 1997. Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays. Nucleic Acids Res.. 25(6)1155–1161. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Shearstone J. R., Allaire N. E., Getman M. E., Perrin S.. 2002. Nondestructive quality control for microarray production. Biotechniques. 32(5)1051–1052, 1054: 1056–1057. [PUBMED], [INFOTRIEVE]
  • Sheridan G. E., Masters C. I., Shallcross J. A., Mac, Key B. M.. 1998. Detection of mRNA by reverse transcription-PCR as an indicator of viability in Escherichia coli cells. Appl. Environ. Microbiol.. 64(4)1313–1318. [PUBMED], [INFOTRIEVE]
  • Singh S., Green R. D., Yue Y. J., Nelson C., Blattner F., Sussman M. R., Cerrina F.. 1999. Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nat. Biotechnol.. 17(10)974–978
  • Singh S. N., Gerba C. P.. 1983. Concentration of coliphage from water and sewage with charge-modified filter aid. Appl. Environ. Microbiol.. 45(1)232–237. [PUBMED], [INFOTRIEVE]
  • Sinton L. W., Finlay R. K., Hannah D. H.. 1998. Distinguishing human from animal faecal contamination in water: A review, New Zeal. J. Mar. Fresh. 32: 323–348
  • Sinton L. W., Hall C. H., Lynch P. A., Davies-Colley R. J.. 2002. Sunlight inactivation of fecal indicator bacteria and bacteriophages from waste stabilization pond effluent in fresh and saline waters. Appl. Environ. Microbiol.. 68(3)1122–1131. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Small J., Call D. R., Brockman F. J., Straub T. M., Chandler D. P.. 2001. Direct detection of 16S rRNA in soil extracts by using oligonucleotide microarrays. Appl. Environ. Microbiol.. 67(10)4708–4716. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Small J., Call D. R., Brockman F. J., Straub T. M., Chandler D. P.. 2001. Direct detection of 16S rRNA in soil extracts by using oligonucleotide microarrays. Appl. Environ. Microbiol.. 67(10)4708–4716. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Somerville C. C., Knight I. T., Straube W. L., Colwell R. R.. 1989. Simple, rapid method for direct isolation of nucleic acids from aquatic environments. Appl. Environ. Microbiol.. 55(3)548–554. [PUBMED], [INFOTRIEVE]
  • Stelzer W., Jacob J. A.. 1991. A study of Campylobacter in sewage sludge and in river water. Wat. Sci. Tech.. 24: 117–120
  • Stender H., Oliveira K., Rigby S., Bargoot F., Coull J.. 2001. Rapid detection, identification, and enumeration of Escherichia coli by fluorescence in situ hybridization using an array scanner. J. Microbiol. Meth.. 45(1)31–39
  • Stillman B. A., Tonkinson J. L.. 2001. Expression microarray hybridization kinetics depend on length of the immobilized DNA but are independent of immobilization substrate. Anal. Biochem.. 295(2)149–157. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Stine O. C., Carnahan A., Singh R., Powell J., Furuno J. P., Dorsey A., Silbergeld E., Williams H. N., Morris J. G.. 2003. Characterization of microbial communities from coastal waters using microarrays. Environ. Monit. Assess.. 81(1–3)327–336
  • Stinear T., Matusan A., Hines K., Sandery M.. 1996. Detection of a single viable Cryptosporidium parvum oocyst in environmental water concentrates by reverse transcription-PCR. Appl. Environ. Microbiol.. 62(9)3385–3390. [PUBMED], [INFOTRIEVE]
  • Straub T. M., Chandler D. P.. 2003. Towards a unified system for detecting waterborne pathogens. J. Microbiol. Meth.. 53(2)185–197
  • Straub T. M., Daly D. S., Wunshel S., Rochelle P. A., De, Leon R., Chandler D. P.. 2002. Genotyping Cyptosporidium parvum with an hsp70 single-nucleotide polymorphism microarray. Appl. Environ. Microbiol.. 68(4)1817–1826. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Szewzyk U., Szewzyk R., Manz W., Schleifer K.-H.. 2000. Microbiological safety of drinking water. Annu. Rev. Microbiol.. 54: 81–127. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Tamanai-Shacoori Z., Jolivet-Gougeon A., Pommepuy M., Cormier M., Colwell R. R.. 1994. Detection of enterotoxigenic Escherichia coli in water by polymerase chain reaction amplification and hybridization. Can. J. Microbiol.. 40: 243–249. [PUBMED], [INFOTRIEVE]
  • Taroncher Oldenburg G., Griner E. M., Francis C. A., Ward B. B.. 2003. Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment. Appl. Environ. Microbiol.. 69(2)1159–1171
  • Theron J., Cloete T. E.. 2002. Emerging waterborne infections: Contributing factors, agents, and detection tools. Crit. Rev. Microbiol.. 28(1)1–26. [PUBMED], [INFOTRIEVE]
  • Theron J., Morar D., Preez M. D., Brözel V. S., Venter S. N.. 2001. A sensitive seminested PCR method for the detection of Shigella in spiked environmental water samples. Wat. Res.. 35(4)869–874
  • Tholozan J. L., Cappelier J. M., Tissier J. P., Delattre G., Federighi M.. 1999. Physiological characterization of viable-but-nonculturable Campylobacter jejuni cells. Appl. Environ. Microbiol.. 65(3)1110–1116. [PUBMED], [INFOTRIEVE]
  • Toranzos G. A., Mc, Feters G. A.. 1997. Detection of indicator microorganisms in environmental freshwaters and drinking waters, in Manual of Environmental Microbiology. Hurst C. J., Knudsen G. R., Mc, Inerney M. J., Stetzenbach L. D., Walter M. V., Washington, D.C., ASM Press. 184–194
  • Tsai Y.-L., Olson B. H.. 1992a. Rapid method for separation of bacterial DNA from humic substances in sediments for polymerase chain reaction. Appl. Environ. Microbiol.. 58(7)2292–2295. [PUBMED], [INFOTRIEVE]
  • Tsai Y.-L., Olson B. H.. 1992b. Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction. Appl. Environ. Microbiol.. 58(2)754–757. [PUBMED], [INFOTRIEVE]
  • Tsai Y.-L., Palmer C. J., Sangermano L. R.. 1993. Detection of Escherichia coli in sewage and sludge by polymerase chain reaction. Appl. Environ. Microbiol.. 59(2)353–357. [PUBMED], [INFOTRIEVE]
  • Van, Ijperen C., Kuhnert P., Frey J., Clewley J. P.. 2002. Virulence typing of Escherichia coli using microarrays. Mol. Cell. Probe.. 16(5)371–378
  • Velazquez M., Feirtag J. M.. 1999. Helicobacter pylori: Characteristics, pathogenicity, detection methods and mode of transmission implicating foods and water. Int. J. Food Microbiol.. 53(2–3)95–104. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Venkateswaran K., Kamijoh Y., Ohashi E., Nakanishi H.. 1997. A simple filtration technique to detect enterohemorrhagic Escherichia coli O157:H7 and its toxins in beef by multiplex PCR. Appl. Environ. Microbiol.. 63(10)4127–4131. [PUBMED], [INFOTRIEVE]
  • Venkateswaran K., Murakoshi A., Satake M.. 1996. Comparison of commercially available kits with standard methods for the detection of coliforms and Escherichia coli in foods. Appl. Environ. Microbiol.. 62(7)2236–2243. [PUBMED], [INFOTRIEVE]
  • Vesey G., Ashbolt N., Fricker E. J., Deere D., Williams K. L., Veal D. A., Dorsch M.. 1998. The use of a ribosomal RNA targeted oligonucleotide probe for fluorescent labelling of viable Cryptosporidium parvum oocysts. J. Appl. Microbiol.. 85(3)429–440. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Waage A. S., Vardund T., Lund V., Kapperud G.. 1999a. Detection of low numbers of Salmonella in environmental water, sewage and food samples by a nested polymerase chain reaction assay. J. Appl. Microbiol.. 87: 418–428. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Waage A. S., Vardund T., Lund V., Kapperud G.. 1999b. Detection of low numbers of pathogenic Yersinia enterocolitica in environmental water and sewage samples by nested polymerase chain reaction. J. Appl. Microbiol.. 87: 814–821. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Wang G., Doyle M. P.. 1998. Survival of enterohemorrhagic Escherichia coli O157:H7 in water. J. Food Prot.. 61(6)662–667. [PUBMED], [INFOTRIEVE]
  • Wang R. F., Beggs M. L., Robertson L. H., Cerniglia C. E.. 2002. Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples. FEMS Microbiol. Lett.. 213(2)175–182. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Wang R.-F., Cao W.-W., Cerniglia C. E.. 1996. PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples. Appl. Environ. Microbiol.. 62(4)1242–1247. [PUBMED], [INFOTRIEVE]
  • Way J. S., Josephson K. L., Pillai S. D., Abbaszadegan M., Gerba C. P., Pepper I. L.. 1993. Specific detection of Salmonella spp. by multiplex polymerase chain reaction. Appl. Environ. Microbiol.. 59(5)1473–1479. [PUBMED], [INFOTRIEVE]
  • Westin L., Xu X., Miller C., Wang L., Edman C. F., Nerenberg M.. 2000. Anchored multiplex amplification on a microelectronic chip array. Nat. Biotechnol.. 18(2)199–204. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Widmer G., Orbacz E. A., Tzipori S.. 1999. beta-tubulin mRNA as a marker of Cryptosporidium parvum oocyst viability. Appl. Environ. Microbiol.. 65(4)1584–1588. [PUBMED], [INFOTRIEVE]
  • Wilson K. H., Wilson W. J., Radosevich J. L., De, Santis T. Z., Viswanathan V. S., Kuczmarski T. A., Andersen G. L.. 2002. High-density microarray of small-subunit ribosomal DNA probes. Appl. Environ. Microbiol.. 68(5)2535–2541. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Wilson W. J., Strout C. L., De, Santis T. Z., Stilwell J. L., Carrano A. V., Andersen G. L.. 2002. Sequence-specific identification of 18 pathogenic microorganisms using microarray technology. Mol. Cell. Probe.. 16(2)119–127
  • Wolk D. M., Johnson C. H., Rice E. W., Marshall M. M., Grahn K. F., Plummer C. B., Sterling C. R.. 2000. A spore counting method and cell culture model for chlorine disinfection studies of Encephalitozoon syn. Septata intestinalis. Appl. Environ. Microbiol.. 66(4)1266–1273. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Wu L. Y., Thompson D. K., Li G. S., Hurt R. A., Tiedje J. M., Zhou J. Z.. 2001. Development and evaluation of functional gene arrays for detection of selected genes in the environment. Appl. Environ. Microbiol.. 67(12)5780–5790. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Ye R. W., Wang T., Bedzyk L., Croker K. M.. 2001. Applications of DNA microarrays in microbial systems. J. Microbiol. Meth.. 47(3)257–272
  • Yu H., Bruno J. G.. 1996. Immunomagnetic-electrochemiluminescent detection of Escherichia coli O157 and Salmonella typhimurium in foods and environmental water samples. Appl. Environ. Microbiol.. 62(2)587–592. [PUBMED], [INFOTRIEVE]
  • Yu Z., Mohn W. W.. 1999. Killing two birds with one stone: Simultaneous extraction of DNA and RNA from activated sludge biomass. Can. J. Microbiol.. 45(3)269–272
  • Zaccone R. E., Crisafi E., Carusi G.. 1995. Evaluation of fecal pollution in coastal Italian waters by immunofluorescence. Aquat. Microb. Ecol.. 9: 79–85
  • Zhou J. Z., Thompson D. K.. 2002. Challenges in applying microarrays to environmental studies. Curr. Opin. Biotech.. 13(3)204–207. [CROSSREF], [PUBMED], [INFOTRIEVE]
  • Zimmer M., Barnhart H., Idris U., Lee M. D.. 2003. Detection of Campylobacter jejuni strains in the water lines of a commercial broiler house and their relationship to the strains that colonized the chickens. Avian Dis.. 47(1)101–107. [PUBMED], [INFOTRIEVE]

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