The microsatellites and minisatellites in the genome of Fenneropenaeus chinensis

References

• Adam-Blondon AF, Roux C, Claux D, Butterlin G, Merdinoglu D, This P. Mapping 245 SSR markers on the Vitis vinifera genome: A tool for grape genetics. Theor Appl Genet 2004; 109(5)1017–1027
   Google Scholar
• Barrett B, Griffiths A, Schreiber M, Ellison N, Mercer C, Bouton J, Ong B, Forster J, Sawbridge T, Spangenberg G, Bryan G, Woodfield D. A microsatellite map of white clover. Theor Appl Genet 2004; 109(3)596–608
   Google Scholar
• Belkum AV, Scherer S, Alphen LV, Verbrugh H. Shortsequence DNA repeats in prokaryotic genomes. Microbiol Mol Biol Rev 1998; 62(2)275–293
   Google Scholar
• Benson G. Tandem repeats finder: A program to analyze DNA sequences. Nucleic Acids Res 1999; 27: 573–580
   PubMed Web of Science ®Google Scholar
• Borstnik B, Pumpernik D. Tandem repeats in protein coding regions of primate genes. Genome Res 2002; 12(6)909–915
   Google Scholar
• Buard J, Vergnaud G. Complex recombination events at the hypermutable minisatellite CEB1 (D2S90). EMBO J 1994; 13(13)3203–3210
   Google Scholar
• Chen RB, Huang Y. Simple sequence repeat in genome. J Shanxi Norm Univ (Nature science edition) 2004; 32(Suppl.)16–20
   Google Scholar
• Chow S, Dougherty WJ, Sandifer PA. Meiotic chromosome complements and nuclear DNA contents of four species of shrimps of the genus Penaeus. J Crustacean Biol 1990; 10: 29–36
   Web of Science ®Google Scholar
• DeNise S, Johnston E, Halverson J, Marshall K, Rosenfeld D, McKenna S, Sharp T, Edwards J. Power of exclusion for parentage verification and probability of match for identity in American Kennel Club breeds using 17 canine microsatellite markers. Anim Genet 2004; 35(1)14–17
   Google Scholar
• Edwards YJ, Elgar G, Clark MS, Bishop MJ. The identification and characterization of microsatellites in the compact genome of the Japanese pufferfish, Fugu rubripes: Perspectives in functional and comparative genomic analyses. J Mol Biol 1998; 278(4)843–854
   Google Scholar
• Gao H, Kong J. An analysis of minisatellite repeat sequences in Chinese shrimp (Fenneropenaeus chinensis) genome. Acta Zool Sin 2005; 51(1)101–107
   Google Scholar
• Haber JE, Louis EJ. Minisatellite origins in yeast and humans. Genomics 1998; 48(1)132–135
   Google Scholar
• Hadonou AM, Sargent DJ, Wilson F, James CM, Simpson DW. Development of microsatellite markers in Fragaria, their use in genetic diversity analysis, and their potential for genetic linkage mappi. Genome 2004; 47(3)429–438
   Google Scholar
• International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 2001; 409: 860–921
   PubMed Web of Science ®Google Scholar
• Jeffreys AJ, Wilson V, Thein SL. Hypervariable ‘minisatellite’ regions in human DNA. Nature 1985; 314(6006)67–73
   PubMed Web of Science ®Google Scholar
• Jurka J, Pethiyagoda C. Simple repetitive DNA sequences from primates: Compilation and analysis. J Mol Evol 1995; 40(2)120–126
   Google Scholar
• Katti MV, Ranjekar PK, Gupta VS. Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol Biol Evol 2001; 18: 1161–1167
   PubMed Web of Science ®Google Scholar
• Klevytska AM, Price LB, Schupp JM, Worsham PL, Wong J, Keim P. Identification and characterization of variable number tandem repeats in the Yersinia pestis genome. J Clin Microbiol 2001; 39(9)3179–3185
   Google Scholar
• Moncke-Buchner E, Reich S, Mucke M, Reuter M, Messer W, Wanker EE, Kruger DH. Counting CAG repeats in the Huntington's disease gene by restriction endonuclease EcoP15I cleavage. Nucleic Acids Res 2002; 30(16)e83
   Google Scholar
• Napierala M, Parniewski P, Pluciennik A, Wells RD. Long CTG·CAG repeat sequences markedly stimulate intramolecular recombination. J Biol Chem 2002; 277: 34087–34100
   PubMed Web of Science ®Google Scholar
• Parsons R, Li GM, Longley MJ, Fang WH, Papadopoulos N, Jen J, de la Chapelle A, Kinzler KW, Vogelstein B, Modrich P. Hypermutability and mismatch repair deficiency in RER+tumor cells. Cell 1993; 75(6)1227–1236
   PubMed Web of Science ®Google Scholar
• Rocha EP, Matic I, Taddei F. Overrepresentation of repeats in stress response genes: A strategy to increase versatility under stressful conditions?. Nucleic Acids Research 2002; 30(9)1886–1894
   Google Scholar
• Romero C, Pedryc A, Munoz V, Llacer G, Badenes ML. Genetic diversity of different apricot geographical groups determined by SSR markers. Genome 2003; 46(2)244–252
   Google Scholar
• Ross CL, Dyer KA, Erez T, Miller SJ, Jaenike J, Markow TA. Rapid divergence of microsatellite abundance among species of Drosophila. Mol Biol Evol 2003; 20(7)1143–1157
   Google Scholar
• Schlötterer C, Tautz D. Slippage synthesis of simple sequence DNA. Nucleic Acids Res 1992; 20(2)211–215
   PubMed Web of Science ®Google Scholar
• Selvamani MJ, Degnan SM, Degnan BM. Microsatellite genotyping of individual abalone larvae: Parentage assignment in aquaculture. Mar Biotechnol (NY) 2001; 3(5)478–485
   Google Scholar
• Staten R, Schully SD, Noor MA. A microsatellite linkage map of Drosophila mojavensis. BMC Genet 2004; 5(1)12
   Google Scholar
• Strand M, Prolla TA, Liskay RM, Petes TD. Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair. Nature 1993; 365(6443)274–276
   PubMed Web of Science ®Google Scholar
• Takagi M, Sato J, Monbayashi C, Aoki K, Tsuji T, Hatanaka H, Takahashi H, Sakai H. Evaluation of microsatellites identified in the tiger puffer Takifugu rubripes DNA database. Fisheries Sci 2003; 69: 1085–1095
   Google Scholar
• Tóth G, Gáspári Z, Jurka J. Microsatellites in different eukaryotic genomes: Survey and analysis. Genome Res 2000; 10(7)967–981
   Web of Science ®Google Scholar
• Usdin K, Grabczyk E. DNA repeat expansions and human disease. Cell Mol Life Sci 2000; 57(6)914–931
   Google Scholar
• Vergnaud G, Denoeud F. Minisatellites: Mutability and genome architecture. Genome Res 2000; 10(7)899–907
   PubMed Web of Science ®Google Scholar
• Weber JL. Informativeness of Human(dCdA)n·(dGdT)n polymorphisms. Genomics 1990; 7: 524–530
   PubMed Web of Science ®Google Scholar
• Yu QY, Li B, Li GR, Fang SM, Yan H, Tong XL, Qian JF, Xia QY, Lu C. Abundance and distribution of microsatellites in the entire mosquito genome. Prog Biochem Biophys 2005; 32(5)435–441
   Google Scholar