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Original

Characterization and phylogeny of two β-cytoskeletal actins from Hemibarbus mylodon (Cyprinidae, Cypriniformes), a threatened fish species in Korea

Full Length Research Paper

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Pages 87-97 | Received 21 Sep 2006, Accepted 10 May 2007, Published online: 11 Jul 2009

References

  • Bovenschulte M, Weber K. Deuterostomic actin genes and the definition of the chordates: cDNA cloning and gene organization for cephalochordates and hemichordates. J Mol Evol 1997; 45: 653–660
  • Erba HP, Eddy R, Shows T, Kedes L, Gunning P. Structure, chromosome location, and expression of the human γ-actin gene: Differential evolution, location, and expression of the cytoskeletal β- and γ-actin genes. Mol Cell Biol 1988; 8: 1775–1789
  • Fang H, Brandhorst BP. Evolution of actin gene families of sea urchins. J Mol Evol 1994; 39: 347–356
  • Felsenstein J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 1985; 39: 783–791
  • Hall TA. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 1999; 41: 95–98
  • Hennessey ES, Drummond DR, Sparrow JC. Molecular genetics of actin function. Biochem J 1993; 291: 657–671
  • Hwang U-W, Han M-S, Kim I-C, Lee Y-S, Aoki Y, Lee J-S. Cloning and sequences of β-actin genes from Rhodeus notatus and the silver carp Hypophthalmichthys molitrix (Cyprinidae) and the phylogeny of cyprinid fishes inferred from β-actin genes. DNA Seq 2002; 13: 153–159
  • Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, et al. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 2004; 431: 946–957
  • Jang M-H, Lucas MC, Joo G-J. The fish fauna of mountain streams in South Korean national parks and its significance to conservation of regional freshwater fish biodiversity. Biol Conserv 2003; 114: 115–126
  • Kissinger JC, Hahn J-H, Raff RA. Rapid evolution in a conserved gene family. Evolution of the actin gene family in the sea urchin genus Heliocidaris and related genera. Mol Biol Evol 1997; 14: 654–665
  • Kost TA, Theodorakis N, Hughes SH. The nucleotide sequence of the chick cytoplasmic β-actin gene. Nucleic Acids Res 1983; 11: 8287–8301
  • Kumar S, Tamura K, Nei M. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 2004; 5: 150–163
  • Lee J-S. The internally self-fertilizing hermaphroditic teleost Rivulus marmoratus (Cyprinodontiformes, Rivulidae) β-actin gene: amplification and sequence analysis with conserved primers. Mar Biotechnol 2000; 2: 161–166
  • Lee J-S, Gye MC. Use of β-actin gene intron 2 as a phylogenetic marker in fish taxonomy. DNA Seq 2001; 12: 71–76
  • Liu Z, Zhu Z, Roberg K, Faras AJ, Guise KS, Kapuscinski AR, Hackett PB. The β-actin gene of carp (Ctenopharyngodon idella). Nucleic Acids Res 1989; 17: 5850
  • Liu ZJ, Zhu ZY, Roberg K, Faras A, Guise K, Kapuscinski AR, Hackett PB. Isolation and characterization of β-actin gene of carp (Cyprinus carpio). DNA Seq 1990; 1: 125–136
  • Miwa T, Manabe Y, Kurokawa K, Kamada S, Kanda N, Bruns G, Ueyama H, Kakunaga T. Structure, chromosome location, and expression of the human smooth muscle (enteric type) γ-actin gene: Evolution of six human actin genes. Mol Cell Biol 1991; 11: 3296–3306
  • Nakajima-Iijima S, Hamada H, Reddy P, Kakunaga T. Molecular structure of the human cytoplasmic β-actin gene: Interspecies homology of sequences in the introns. Proc Natl Acad Sci USA 1985; 82: 6133–6137
  • Nam YK, Noh JK, Cho YS, Cho HJ, Cho KN, Kim CG, Kim DS. Dramatically accelerated growth and extraordinary gigantism of transgenic mud loach Misgurnus mizolepis. Transgenic Res 2001; 10: 353–362
  • Ng S-Y, Gunning P, Eddy R, Ponte P, Leavitt J, Shows T, Kedes L. Evolution of the functional human β-actin gene and its multi-pseudogene family: Conservation of noncoding regions and chromosomal dispersion of pseudogenes. Mol Cell Biol 1985; 5: 2720–3732
  • Noh JK, Cho K-N, Han EH, Kim A, Lee J-S, Kim DS, Kim CG. Genomic cloning of mud loach Misgurnus mizolepis (Cypriniformes Cobitidae) β-actin gene and usefulness of its promoter region for fish transgenesis. Mar Biotechnol 2003; 5: 244–252
  • Nudel U, Zakut R, Shani M, Neuman S, Levy Z, Yaffe D. The nucleotide sequence of the rat cytoplasmic β-actin gene. Nucleic Acids Res 1983; 11: 1759–1771
  • Reece KS, McElroy D, Wu R. Function and evolution of actins. Evol Biol 1992; 26: 1–34
  • Swofford DL. PAUP: Phylogenetic analysis using parsimony (and other methods). Version 4.0b10. Sinauer Associates, Sunderland (MA) 2002
  • Takagi S, Sasado T, Tamiya G, Ozato K, Wakamatsu Y, Takeshita A, Kimura M. An efficient expression vector for transgenic medaka construction. Mol Mar Biol Biotechnol 1994; 3: 192–199
  • Venkatesh B, Tay BH, Elgar G, Brenner S. Isolation, characterization and evolution of nine pufferfish (Fugu rubripes) actin genes. J Mol Biol 1996; 259: 655–665
  • White ME, Crother BI. Gene conversions may obscure actin gene family relationships. J Mol Evol 2000; 50: 170–174

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