Genotypes of JC virus, DNA of cytomegalovirus, and proviral DNA of human immunodeficiency virus in eyes of acquired immunodeficiency syndrome patients

REFERENCES

• Agostini H T, Brubaker G R, Shao J, Levin A, Ryschkewitsch C F, Blattner W A, Stoner G L. BK virus and a new type of JC virus excreted by HIV-1 positive patients in rural Tanzania. Arch Virol 1995; 140: 1919–1934, [PUBMED], [INFOTRIEVE]
   PubMed Web of Science ®Google Scholar
• Agostini H T, et al. Genotypes of JC virus in East, Central and Southwest Europe. J Gen Virol 2001a; 82: 1221–1331, [PUBMED], [INFOTRIEVE], [CSA]
   PubMed Web of Science ®Google Scholar
• Agostini H T, Jobes D V, Chima S C, Ryschkewitsch C F, Stoner G L. Natural and pathogenic variation in the JC virus genome. Recent research and development virology., SG Pandalai. Transworld Research Network, TrivandrumIndia 1999; pp 683–701
   Google Scholar
• Agostini H T, Jobes D V, Stoner G L. Molecular evolution and epidemiology of JC virus. Human polymoaviruses. Molecular and clinical perspectives, K Khalili. Stoner GL New York, Wiley-Liss 2001b; pp 491–526
   Google Scholar
• Agostini H T, Ryschkewitsch C F, Baumhefner R W, Tourtellotte W W, Singer E J, Komoly S, Stoner G L. Influence of JC virus coding region genotype on risk of multiple sclerosis and progressive multifocal leukoencephalopathy. J NeuroVirol 2000; 6(Suppl 2)101–108, [CSA]
   Google Scholar
• Agostini H T, Ryschkewitsch C F, Brubaker G R, Shao J, Stoner G L. Five complete genomes of JC virus type 3 from Africans and African Americans. Arch Virol 1997a; 142: 637–655, [PUBMED], [INFOTRIEVE], [CROSSREF]
   PubMedGoogle Scholar
• Agostini H T, Ryschkewitsch C F, Singer E J, Stoner G L. JC virus regulatory region rearrangements and genotypes in progressive multifocal leukoence-parphalopathy:two independent aspects of virus variation. J Gen Virol 1997b; 78: 659–664, [PUBMED], [INFOTRIEVE], [CSA]
   PubMed Web of Science ®Google Scholar
• Agostini H T, Ryschkewitsch C F, Stoner G L. Genotype profile of human polyomavirus JC excreted in urine of immunocompetent individuals. J Clin Microbiol 1996; 34: 159–164, [PUBMED], [INFOTRIEVE], [CSA]
   PubMed Web of Science ®Google Scholar
• Agostini H T, Ryschkewitsch C F, Stoner G L. Complete genome of a JC virus genotype type 6 from the brain of an African American with progressive multifocal leukoencephalopathy. J Hum Virol 1998; 1: 267–272, [PUBMED], [INFOTRIEVE], [CSA]
   PubMedGoogle Scholar
• Agostini H T, Yanagihara R, Davis V, Ryschkewitsch C F, Stoner G L. Asian genotypes of JC virus in Native Americans and in a Pacific Island population:markers of viral evolution and human migration. Proc Natl Acad Sci U S A 1997c; 94: 14542–14546, [PUBMED], [INFOTRIEVE], [CROSSREF], [CSA]
   PubMed Web of Science ®Google Scholar
• Arrington A S, Butel J S. SV40 and human tumors. Human polyomaviruses. Molecular and clinical perspectives, K Khalili, GL Stoner. Wiley-Liss, , New York 2001; pp 461–490
   Google Scholar
• Astroem K E. Progressive multifocal leukoencephalopathy:the discovery of a neurologic disease. Human polyomaviruses. Molecular and clinical perspectives, K Khalili, GL Stoner. Wiley-Liss, , New York 2001; pp 1–10
   Google Scholar
• Ault G S, Stoner G L. Human polyomavirus JC promoter/enhancer rearrangement patterns from progressive multifocal leukoencephalopathy brain are unique derivatives of a single archetypal structure. J Gen Virol 1993; 74: 1499–1507, [PUBMED], [INFOTRIEVE], [CSA]
   PubMed Web of Science ®Google Scholar
• Berger J R, Nath A. Clinical progressive multifocal leukoencephalopathy:diagnosis and treatment. Human polyomaviruses. Molecular and clinical perspectives, K Khalili, GL Stoner. Wiley-Liss, , New York 2001; pp 237–256
   Google Scholar
• Bratt G, Hammarin A L, Grandien M, Hedquist B G, Nennesmo I, Sundelin B, Seregard S. BK virus as the cause of meningoencephalitis, retinitis and nephritis in a patient with AIDS. AIDS 1999; 13: 1071–1075, [PUBMED], [INFOTRIEVE], [CROSSREF]
   PubMedGoogle Scholar
• Chima S C, Ryschkewitsch C F, Fan K J, Stoner G L. Polyomavirus JC Genotypes in an urban United States population reflect the history of African origin and genetic admixture in modern African Americans. Hum Biol 2000; 72: 837–850, [PUBMED], [INFOTRIEVE], [CSA]
   PubMedGoogle Scholar
• Chowdhury M, Taylor J P, Chang C-F, Rappaport J, Khalili K. Evidence that a sequence similar to TAR is important for induction of the JC virus late promoter by human immunodeficiency virus type 1 Tat. J Virol 1992; 66: 7355–7361, [PUBMED], [INFOTRIEVE], [CSA]
   PubMedGoogle Scholar
• Corallini A, Tognon M, Negrini M, Barbanti-Brodano G. Evidence for BK virus as a human tumor virus. Human polymoaviruses. Molecular and clinical perspectives, K Khalili, GL Stoner. Wiley-Liss, , New York 2001; pp 431–460
   Google Scholar
• Cui X, et al. Chinese and Mongolian strains of JC virus are Afro-Asiatic in origin, but are phylogenetically distinct from basal Papua New Guinean strains, as well as from the Korean and Japanese strains which predominate in Native Americans. J Mol Evol 2004; 58: 568–583, [PUBMED], [INFOTRIEVE], [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Daniel D C, et al. Coordinate effects of human immunodeficiency virus type 1 protein Tat and cellular protein Purα on DNA replication initiated at the JC virus origin. J Gen Virol 2001; 82: 1543–1553, [PUBMED], [INFOTRIEVE], [CSA]
   PubMedGoogle Scholar
• Del Valle L, Croul S, Morgello S, Amini S, Rappaport J, Khalili K. Detection of HIV-1 Tat and JCV capsid protein, VP1, in AIDS brain with progressive multifocal leukoencephalopathy. J NeuroVirol 2000; 6: 221–228, [CSA]
   PubMed Web of Science ®Google Scholar
• Del Valle L, Gordon J, Ferrante P, Khalili K. JC Virus in experimental and clinical brain tumorigenesis. Human polymoaviruses. Molecular and clinical perspectives, K Khalili, GL Stoner. Wiley-Liss, , New York 2001; pp 409–430
   Google Scholar
• Dorries K, Elsner C. Persistent polyomavirus infection in kidney tissue of patients with diseases other than progressive multifocal leukoencephalopathy. Virol Life Sci Adv 1991; 10: 51–61, [CSA]
   Google Scholar
• Frisque R J, Bream G L, Cannella M T. Human polyomavirus JC virus genome. J Virol 1984; 51: 458–469, [PUBMED], [INFOTRIEVE], [CSA]
   PubMed Web of Science ®Google Scholar
• Guo J, et al. Geographical distribution of the human polyomavirus JC virus type A and B and isolation of a new type from Ghana. J Gen Virol 1996; 77: 919–927, [PUBMED], [INFOTRIEVE], [CSA]
   PubMedGoogle Scholar
• Guo J, et al. Four geographically distinct genotypes of JC virus are prevalent in China and Mongolia:implications for the racial composition of modern China. J Gen Virol 1998; 79: 2499–2505, [PUBMED], [INFOTRIEVE], [CSA]
   PubMedGoogle Scholar
• Hedquist B G, Bratt G, Hammarin A L, Grandien M, Nennesmo I, Sundelin B, Seregard S. Identification of BK virus in a patient with acquired immune deficiency syndrome and bilateral atypical retinitis. Ophthalmology 1999; 106: 129–132, [PUBMED], [INFOTRIEVE], [CROSSREF], [CSA]
   PubMed Web of Science ®Google Scholar
• Heilbronn R, Albrecht I, Stephan S, Bürkle A, zur Hausen H. Human cytomegalovirus induces JC virus DNA replication in human fibroblasts. Proc Natl Acad Sci U S A 1993; 90: 11406–11410, [PUBMED], [INFOTRIEVE], [CSA]
   PubMedGoogle Scholar
• Jobes D V, et al. New JC virus (JCV) genotypes from papua new guinea and micronesia (type 8 and type 2E) and evolutionary analysis of 32 complete JCV genomes. Arch Virol 2001; 146: 2097–2113, [CROSSREF]
   PubMed Web of Science ®Google Scholar
• Kitamura T, Kunitake T, Guo J, Tominaga T, Kawabe K, Yogo Y. Transmission of the human polyomavirus JC virus occurs both within the family and outside the family. J Clin Microbiol 1994; 32: 2359–2363, [PUBMED], [INFOTRIEVE], [CSA]
   PubMedGoogle Scholar
• Kitamura T, et al. Peopling of Japan as revealed by genotyping of urinary JC Virus DNA. Anthropol Sci 1998; 106: 311–325
   Google Scholar
• Kosel S G, et al. Inter-laboratory comparison of DNA preservation in archival paraffin-embedded human brain tissue from participating centres on four continents. Neurogenetics 2001; 3: 163–170, [PUBMED], [INFOTRIEVE], [CROSSREF], [CSA]
   PubMedGoogle Scholar
• Krachmarov C P, Chepenik L G, Barr-Vagell S, Khalili K, Johnson E M. Activation of the JC virus Tat-responsive transcriptional control element by association of the Tat protein of human immunodeficiency virus 1 with cellular protein Purα. Proc Natl Acad Sci U S A 1996; 93: 14112–14117, [PUBMED], [INFOTRIEVE], [CROSSREF], [CSA]
   PubMedGoogle Scholar
• Monaco M CG, Jensen P N, Hou J, Durham L C, Major E O. Detection of JC virus DNA in human tonsil tissue:evidence for site of initial viral infection. J Virol 1998; 72: 9918–9923, [PUBMED], [INFOTRIEVE], [CSA]
   PubMed Web of Science ®Google Scholar
• Newman J T, Frisque R J. Detection of archetype and rearranged variants of JC virus in multiple tissues from a pediatric PML patient. J Med Virol 1997; 52: 243–252, [PUBMED], [INFOTRIEVE], [CROSSREF], [CSA]
   PubMedGoogle Scholar
• Ormerod L D, Rhodes R H, Gross S A, Crane L R, Houchin K W. Ophthalmologic manifestations of acquired immune deficiency syndrome-associated progressive multifocal leukoencephalopathy. Ophthalmology 1996; 103: 899–906, [PUBMED], [INFOTRIEVE], [CSA]
   PubMedGoogle Scholar
• Raj G V, Khalili K. Transcriptional regulation—lessons from the human neurotropic polyomavirus, JCV. Virology 1995; 213: 283–291, [PUBMED], [INFOTRIEVE], [CROSSREF], [CSA]
   PubMed Web of Science ®Google Scholar
• Ryschkewitsch C F, et al. Human polyomavirus JC variants in Papua New Guinea and Guam reflect ancient population settlement and viral evolution. Microbe Infect 2000; 2: 987–996, [CROSSREF], [CSA]
   PubMedGoogle Scholar
• Sugimoto C, et al. Typing of urinary JC virus DNA offers a novel means of tracing human migrations. Proc Natl Acad Sci U S A 1997; 94: 9191–9196, [PUBMED], [INFOTRIEVE], [CROSSREF], [CSA]
   PubMedGoogle Scholar
• Tada H, Rappaport J, Lashgari M, Amini S, Wong-Staal F, Khalili K. Trans-activation of the JC virus late promoter by the Tat protein of type 1 human immunodeficiency virus in glial cells. Proc Natl Acad Sci U S A 1990; 87: 3479–3483, [PUBMED], [INFOTRIEVE], [CSA]
   PubMed Web of Science ®Google Scholar
• Tominaga T, Yogo Y, Kitamura T, Aso Y. Persistence of archetypal JC virus DNA in normal renal tissue derived from tumor-bearing patients. Virology 1992; 186: 736–741, [PUBMED], [INFOTRIEVE], [CROSSREF], [CSA]
   PubMedGoogle Scholar
• Vallbracht A, Löhler J, Gossmann J, Glück T, Petersen D, Gerth H-J, Gencic M, Dörries K. Disseminated BK type polyomavirus infection in an AIDS patient associated with central nervous system disease. Am J Pathol 1993; 143: 29–39, [PUBMED], [INFOTRIEVE]
   PubMedGoogle Scholar
• Voltz R, Jäger G, Seelos K, Fuhry L, Hohlfeld R. BK virus encephalitis in an immunocompetent patient. Arch Neurol 1996; 53: 101–103, [PUBMED], [INFOTRIEVE]
   PubMedGoogle Scholar
• Winklhofer K F, Albrecht I, Wegner M, Heilbronn R. Human cytomegalovirus immediate-early gene 2 expression leads to JCV replication in nonpermissive cells via transcriptional activation of JCV T antigen. Virology 2000; 275: 323–334, [PUBMED], [INFOTRIEVE], [CROSSREF], [CSA]
   PubMedGoogle Scholar
• Yogo Y, Guo J, Iida T, Satoh K I, Taguchi F, Takahashi H, Hall W W, Nagashima K. Occurrence of multiple JC virus variants with distinctive regulatory sequences in the brain of a single patient with progressive multifocal leukoencephalopathy. Virus Genes 1994; 8: 99–105, [PUBMED], [INFOTRIEVE], [CSA]
   PubMedGoogle Scholar
• Yogo Y, Kitamura T, Sugimoto C, Ueki T, Aso Y, Hara K, Taguchi F. Isolation of a possible archetypal JC virus DNA sequence from nonimmunocompromised individuals. J Virol 1990; 64: 3139–3143., [PUBMED], [INFOTRIEVE]
   PubMed Web of Science ®Google Scholar