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Original

Ultra-rapid preparation of total genomic DNA from isolates of yeast and mould using Whatman FTA filter paper technology – a reusable DNA archiving system

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Pages 389-398 | Received 21 Sep 2005, Published online: 09 Jul 2009

References

  • Haynes K, Westerneng T, Fell J, Moens W. Rapid detection and identification of pathogenic fungi by polymerase chain reaction amplification of large subunit ribosomal DNA. J Med Vet Mycol 1996; 33: 319–325
  • Makimura K, Murayama SY, Yamaguchi H. Detection of a wide range of medically important fungi by polymerase chain reaction. J Med Microbiol 1994; 40: 358–364
  • Sandhu GS, Kline BC, Stockman L, Roberts GD. Molecular probes for diagnosis of fungal infections. J Clin Microbiol 1995; 33: 2913–2919
  • Tang C, Holden D, Aufauvre-Brown A, Cohen J. The detections of Aspergillus spp. by the polymerase chain reaction and its evaluation of bronchealveolar lavage fluid. Am Rev Respir Dis 1993; 148: 1313–1317
  • Al-Samarrai TH, Schmid J. A simple method for extraction of fungal genomic DNA. Lett Appl Microbiol 2000; 30: 53–56
  • Cenis JL. Rapid extraction of fungal DNA for PCR amplification. Nucl Acids Res 1992; 20: 2380
  • Dean TR, Betancourt D, Menetrez MY. A rapid DNA extraction method for PCR identification of fungal indoor air contaminants. J Microbiol Methods 2004; 56: 431–434
  • Faggi E, Pini G, Campisi E. Use of magnetic beads to extract fungal DNA. Mycoses 2005; 48: 3–7
  • Guo JR, Schneider F, Abd-Elsalam KA, Vereet JA. Rapid and efficient extraction of genomic DNA from different phytopathogenic fungi using DNAzol reagent. Biotechnol Lett 2005; 27: 3–6
  • Hopfer RL, Walden P, Setterquist S, Highsmith WE. Detection and differentiation of fungi in clinical specimens using polymerase chain recation amplification and restriction enzyme analysis. J Med Vet Mycol 1993; 31: 65–75
  • Jin J, Lee Y-K, Wickes BL. Simple chemical extraction method for DNA isolation from Aspergillus fumigatus and other Aspergillus species. J Clin Microbiol 2004; 42: 4293–4296
  • Muller F-MC, Werner KE, Kasai M, et al. Rapid extraction of genomic DNA from medically important yeasts and filamentous fungi by high-speed cell disruption. J Clin Microbiol 1998; 36: 1625–1629
  • Van Burik JA, Schreckhise RW, White TC, Bowden RA, Myerson D. Comparison of six extraction techniques for isolation of DNA from filamentous fungi. Med Mycol 1998; 36: 299–303
  • Liu D, Coloe S, Baird R, Pederson J. Application of PCR to the identification of dermatophyte fungi. J Med Microbiol 2000; 49: 493–497
  • Li CC, Beck IA, Seidel KD, Frenkel LM. Persistence of human immunodeficiency virus type I subtype B DNA in dried-blood samples on FTA filter paper. J Clin Microbiol 2004; 42: 3847–3849
  • Lampel KA, Orlandi PA, Kornegay L. Improved template preparation for PCR-based assays for the detection of food-borne pathogens. Appl Environ Microbiol 2000; 66: 4539–4542
  • Lampel KA, Dyer D, Kornegay L, Orlandi PA. Detection of Bacillus spores using PCR and FTA filters. J Food Prot 2004; 67: 1036–1038
  • Moscoso H, Thayer SG, Hofacre CL, Kleven SH. Inactivation, storage and PCR detection of Mycoplasma on FTA filter paper. Avian Dis 2004; 48: 841–850
  • Tsukaya H, Iokawa Y, Kondo M, Ohba H. Large-scale general collection of wild-plant DNA in Mustang. Nepal J Plant Res 2005; 118: 57–60
  • Crabbe MJ. A novel method for the transport and analysis of genetic material from polyps and zooxanthellae of scleractinian corals. J Biochem Biophys Methods 2003; 29: 171–176
  • Hide G, Hughes JM, McNuff R. A rapid and simple method of detection of Blepharisma japonicum using PCR and immobilisation on FTA paper. BMC Ecol 2003; 3: 7
  • Schulman ML, Harper CK, Bell E, Nel A, Guthrie AJ. Microsatellite analysis of cryopreserved stallion semen stored on FTA paper. J S Afr Vet Assoc 2002; 73: 222–223
  • Smith LM, Burgoyne LA. Collecting, archiving and processing DNA from wildlife samples using FTA databasing paper. BMC Ecol 2004; 4: 4
  • White TJ, Burns T, Lee S, Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: A Guide to Methods and Applications, MA Innis, DH Gelfand, JJ Sninsky, TJ. White. Academic Press, San Diego 1990; 315–322
  • Issakainen J, Jalava J, Eerola E, Campbell CK. Relatedness of Pseudallescheria, Scedosporium and Graphium pro parte based on SSU rDNA sequences. J Med Vet Mycol 1997; 35: 389–398
  • Altshul SF, Madden TL, Schaffer AA, et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programmes. Nucl Acids Res 1997; 25: 3389–3402
  • Higgins D, Thompson J, Gibson T, et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994; 22: 4673–4680

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