Exophiala spinifera and its allies: diagnostics from morphology to DNA barcoding

References

• de Hoog GS, Takeo K, Yoshida S, et al. Pleoanamorphic life cycle of Exophiala (Wangiella) dermatitidis. Antonie Leeuwenhoek 1994; 65: 143–153
   PubMed Web of Science ®Google Scholar
• Standard PG, Padhye AA, Kaufman L. Exoantigen test for the rapid identification of Exophiala spinifera. J Med Vet Mycol 1991; 29: 273–277
   PubMedGoogle Scholar
• Iwatsu T, Miyaji M, Taguchi H, Okamoto S. Evaluation of skin test for chromoblastomycosis using antigens prepared from culture filtrates of Fonsecaea pedrosoi, Phialophora verrucosa, Wangiella dermatitidis and Exophiala jeanselmei. Mycopathologia 1982; 77: 59–64
   PubMed Web of Science ®Google Scholar
• Espinel-Ingroff A, Shadomy S, Kerkering TM, Shadomy HJ. Exoantigen test for differentiation of Exophiala jeanselmei and Wangiella dermatitidis isolates from other dematiaceous fungi. J Clin Microbiol 1984; 20: 23–27
   PubMed Web of Science ®Google Scholar
• de Hoog GS, Haase G. Nutritional physiology and selective isolation of Exophiala dermatitidis. Antonie Leeuwenhoek 1993; 64: 17–26
   PubMed Web of Science ®Google Scholar
• de Hoog GS, Gerrits van den Ende AHG, Uijthof JM, Untereiner WA. Nutritional physiology of type isolates of currently accepted species of Exophiala and Phaeococcomyces. Antonie Leeuwenhoek 1995; 68: 43–49
   PubMed Web of Science ®Google Scholar
• Tintelnot K, de Hoog GS, Thomas E, et al. Cerebral phaeohyphomycosis caused by an Exophiala species. Mycoses 1991; 34: 239–244
   PubMed Web of Science ®Google Scholar
• de Hoog GS, Poonwan N, Gerrits van den Ende AHG. Taxonomy of Exophiala spinifera and its relationship to E. jeanselmei. Stud Mycol 1999; 43: 133–142
   Google Scholar
• de Hoog GS, Vicente V, Caligiorne RB, et al. Species diversity and polymorphism in the Exophiala spinifera clade containing opportunistic black yeast-like fungi. J Clin Microbiol 2003; 41: 4767–4778
   PubMed Web of Science ®Google Scholar
• Ebach MC, Holdrege C. DNA barcoding is no substitute for taxonomy. Nature 2005; 434: 697
   PubMed Web of Science ®Google Scholar
• Meyer CP, Paulay G. DNA barcoding: error rates based on comprehensive sampling. PLoS Biol 2005; 3: 2229–2238
   Web of Science ®Google Scholar
• Schindel DE, Miller SE. DNA barcoding a useful tool for taxonomists. Nature 2005; 435: 17
   PubMed Web of Science ®Google Scholar
• Stoeckle M. Taxonomy, DNA, and the bar code of life. BioScience 2003; 53: 796–797
   Web of Science ®Google Scholar
• Hajibabaei M, Janzen DH, Burns JM, Hallwachs W, Hebert PD. DNA barcodes distinguish species of tropical Lepidoptera. Proc Natl Acad Sci USA 2006; 103: 968–971
   PubMed Web of Science ®Google Scholar
• Hebert PD, Gregory TR. The promise of DNA barcoding for taxonomy. Syst Biol 2005; 54: 852–859
   PubMed Web of Science ®Google Scholar
• Janzen DH, Hajibabaei M, Burns JM, et al. Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding. Philos Trans R Soc Lond B Biol Sci 2005; 360: 1835–1845
   PubMed Web of Science ®Google Scholar
• Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH. Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci USA 2005; 102: 8369–8374
   PubMed Web of Science ®Google Scholar
• Kumar NP, Rajavel AR, Natarajan R, Jambulingam P. DNA barcodes can distinguish species of Indian mosquitoes (Diptera: Culicidae). J Med Entomol 2007; 44: 1–7
   PubMed Web of Science ®Google Scholar
• Seifert KA, Samson RA, Dewaard JR, et al. Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case. Proc Natl Acad Sci USA 2007; 104: 3901–3906
   PubMed Web of Science ®Google Scholar
• Vences M, Thomas M, Bonett RM, Vieites DR. Deciphering amphibian diversity through DNA barcoding: chances and challenges. Philos Trans R Soc Lond B Biol Sci 2005; 360: 1859–1868
   PubMed Web of Science ®Google Scholar
• Waugh J. DNA barcoding in animal species: progress, potential and pitfalls. Bioessays 2007; 29: 188–197
   PubMed Web of Science ®Google Scholar
• Haase G, Sonntag L, Melzer-Krick B, de Hoog GS. Phylogenetic interference by SSU-gene analysis of members of the Herpotrichiellaceae with special reference to human pathogenic species. Stud Mycol 1999; 43: 80–97
   Google Scholar
• de Hoog GS. Rhinocladiella and allied genera. Stud Mycol 1977; 15: 1–140
   Google Scholar
• Haase G, Sonntag L, van de Peer Y, et al. Phylogenetic analysis of ten black yeast species using nuclear small subunit rRNA gene sequences. Antonie Leeuwenhoek 1995; 68: 19–33
   PubMed Web of Science ®Google Scholar
• Vitale RG, de Hoog GS. Molecular diversity, new species and antifungal susceptibilities in the Exophiala spinifera clade. Med Mycol 2002; 40: 545–556
   PubMed Web of Science ®Google Scholar
• de Hoog GS, Zeng JS, Harrak MJ, Sutton DA. Exophiala xenobiotica sp. nov., an opportunistic black yeast inhabiting environments rich in hydrocarbons. Antonie Leeuwenhoek 2006; 90: 257–268
   PubMed Web of Science ®Google Scholar
• Zeng JS, Sutton AD, Fothergill AW, et al. Spectrum of clinically relevant Exophiala species in the U.S.A. J Clin Microbiol 2007; 45: 3713–3720
   PubMed Web of Science ®Google Scholar
• Yurlova NA, de Hoog GS. Exopolysaccharides and capsules in human pathogenic Exophiala species. Mycoses 2002; 45: 443–448
   PubMed Web of Science ®Google Scholar
• Mackinnon JE, Gezuele E, Conti-Diaz IA, De Gimenez AC. Production of capsule and conidia by yeast-like cells of Phialophora spinifera and Phialophora jeanselmei. Sabouraudia 1973; 11: 33–38
   PubMedGoogle Scholar
• Nishimura K, Miyaji M. Further studies on the phylogenesis of the genus Exophiala and Hortaea. Mycopathologia 1985; 92: 101–109
   PubMed Web of Science ®Google Scholar
• Espinel-Ingroff A, Goldson PR, McGinnis MR, Kerkering TM. Evaluation of proteolytic activity to differentiate some dematiaceous fungi. J Clin Microbiol 1988; 26: 301–307
   PubMed Web of Science ®Google Scholar
• Kane J, Summerbell RC. Sodium chloride as aid in identification of Phaeoannellomyces werneckii and other medically important dematiaceous fungi. J Clin Microbiol 1987; 25: 944–946
   PubMed Web of Science ®Google Scholar
• Espinel-Ingroff A, McGinnis MR, Pincus DH, Goldson PR, Kerkering TM. Evaluation of the API 20C yeast identification system for the differentiation of some dematiaceous fungi. J Clin Microbiol 1989; 27: 2565–2569
   PubMed Web of Science ®Google Scholar
• Owen S, Otani T, Masaoka S, Ohe T. The biodegradation of low-molecular-weight urethane compounds by a strain of Exophiala jeanselmei. Biosci Biotechnol Biochem 1996; 60: 244–248
   PubMed Web of Science ®Google Scholar
• Hasegawa Y, Yoshioka N, Obata H, et al. Degradation of cyclohexanone by Exophiala jeanselmei. Nippon Nogei Kagaku Kaishi 1990; 64: 157–162
   Google Scholar
• Estevez E, Veiga MC, Kennes C. Biodegradation of toluene by the new fungal isolates Paecilomyces variotii and Exophiala oligosperma. J Ind Microbiol Biotechnol 2005; 32: 33–37
   PubMed Web of Science ®Google Scholar
• Cox HHJ, Houtman JHM, Doddema HJ, Harder W. Enrichment of fungi and degradation of styrene in biofilters. Biotechnol Lett 1993; 15: 737–742
   Web of Science ®Google Scholar
• Cox HHJ, Magielsen FJ, Doddema HJ, Harder W. Influence of the water content and water activity on styrene degradation by Exophiala jeanselmei in biofilters. Appl Biochem Biotechnol 1996; 45: 851–856
   Google Scholar
• Davies JS, Wellman AM, Zajic JE. Hyphomycetes utilizing natural gas. Can J Microbiol 1973; 19: 81–85
   PubMed Web of Science ®Google Scholar
• Middelhoven WJ. Catabolism of benzene compounds by ascomycetous and basidiomycetous yeasts and yeastlike fungi. A literature review and an experimental approach. Antonie Leeuwenhoek 1993; 63: 125–144
   PubMed Web of Science ®Google Scholar
• Bossler AD, Richter SS, Chavez AJ, et al. Exophiala oligosperma causing olecranon bursitis. J Clin Microbiol 2003; 41: 4779–4782
   PubMed Web of Science ®Google Scholar
• Campos-Takaki GM, Jardim ML. Report of chronic subcutaneous abscesses caused by Exophiala spinifera. Mycopathologia 1994; 127: 73–76
   PubMed Web of Science ®Google Scholar
• Clancy CJ, Wingard JR, Hong NM. Subcutaneous phaeohyphomycosis in transplant recipients: review of the literature and demonstration of in vitro synergy between antifungal agents. Med Mycol 2000; 38: 169–175
   PubMed Web of Science ®Google Scholar
• Engleberg NC, Johnson J, Bluestein J, Madden K, Rinaldi MG. Phaeohyphomycotic cyst caused by a recently described species, Phaeoannellomyces elegans. J Clin Microbiol 1987; 25: 605–608
   PubMed Web of Science ®Google Scholar
• Hironaga M, Mochizuki T, Watanabe S. Cutaneous phaeohyphomycosis of the sole caused by Exophiala jeanselmei and its susceptibility to amphotericin B, 5-FC and ketoconazole. Mycopathologia 1982; 79: 101–104
   PubMed Web of Science ®Google Scholar
• Kettlewell P, McGinnis MR, Wilkinson GT. Phaeohyphomycosis caused by Exophiala spinifera in two cats. J Med Vet Mycol 1989; 27: 257–264
   PubMedGoogle Scholar
• Murayama N, Takimoto R, Kawai M, et al. A case of subcutaneous phaeohyphomycotic cyst due to Exophiala jeanselmei complicated with systemic lupus erythematosus. Mycoses 2003; 46: 145–148
   PubMed Web of Science ®Google Scholar
• Negroni R, Helou SH, Petri N, et al. Case study: posaconazole treatment of disseminated phaeohyphomycosis due to Exophiala spinifera. Clin Infect Dis 2004; 38: e15–e20
   Web of Science ®Google Scholar
• Oba M, Suzuki Y, Kawasaki M. A case of cutaneous Exophiala spinifera infection. Nippon Ishinkin Gakkai Zasshi 2000; 41: 17–21
   PubMedGoogle Scholar
• Padhye AA, Kaplan W, Neuman MA, Case P, Radcliffe GN. Subcutaneous phaeohyphomycosis caused by Exophiala spinifera. Sabouraudia 1984; 22: 493–500
   PubMedGoogle Scholar
• Rajendran C, Khaitan BK, Mittal R, et al. Phaeohyphomycosis caused by Exophiala spinifera in India. Med Mycol 2003; 41: 437–441
   PubMed Web of Science ®Google Scholar
• Rallis E, Frangoulis E. Successful treatment of subcutaneous phaeohyphomycosis owing to Exophiala jeanselmei with oral terbinafine. Int J Dermatol 2006; 45: 1369–1370
   PubMed Web of Science ®Google Scholar
• Schwinn A, Strohm S, Helgenberger M, Rank C, Brocker EB. Phaeohyphomycosis caused by Exophiala jeanselmei treated with itraconazole. Mycoses 1993; 36: 445–448
   PubMed Web of Science ®Google Scholar
• Silva MR, Fernandes OF, Costa CR, et al. Subcutaneoous phaeohyphomycosis by Exophiala jeanselmei in a cardiac transplant recipient. Rev Inst Med Trop Sao Paulo 2005; 47: 55–57
   PubMedGoogle Scholar
• Suh MK. Phaeohyphomycosis in Korea. Nippon Ishinkin Gakkai Zasshi 2005; 46: 67–70
   PubMedGoogle Scholar
• Tomson N, Abdullah A, Maheshwari MB. Chromomycosis caused by Exophiala spinifera. Clin Exp Dermatol 2006; 31: 239–241
   PubMed Web of Science ®Google Scholar
• Padhye AA, Ajello L. A case of chromoblastomycosis with special reference to the mycology of the isolated Exophiala jeanselmei. Mykosen 1987; 30: 134
   PubMedGoogle Scholar
• Padhye AA, Hampton AA, Hampton MT, et al. Chromoblastomycosis caused by Exophiala spinifera. Clin Infect Dis 1996; 22: 331–335
   PubMed Web of Science ®Google Scholar
• Naka W, Harada T, Nishikawa T, Fukushiro R. A case of chromoblastomycosis: with special reference to the mycology of the isolated Exophiala jeanselmei. Mykosen 1986; 29: 445–452
   PubMedGoogle Scholar
• Kinkead S, Jancic V, Stasko T, Boyd AS. Chromoblastomycosis in a patient with a cardiac transplant. Cutis 1996; 58: 367–370
   PubMed Web of Science ®Google Scholar
• Barba-Gomez JF, Mayorga J, McGinnis MR, Gonzalez-Mendoza A. Chromoblastomycosis caused by Exophiala spinifera. J Am Acad Dermatol 1992; 26: 367–370
   PubMed Web of Science ®Google Scholar
• Thammayya A, Sanyal M. Exophiala jeanselmei causing mycetoma pedis in India. Sabouraudia 1980; 18: 91–95
   PubMedGoogle Scholar
• Neumeister B, Zollner TM, Krieger D, Sterry W, Marre R. Mycetoma due to Exophiala jeanselmei and Mycobacterium chelonae in a 73-year-old man with idiopathic CD4+ T lymphocytopenia. Mycoses 1995; 38: 271–276
   PubMed Web of Science ®Google Scholar
• Hemashettar BM, Patil CS, Nagalotimath SJ, Thammayya A. Mycetoma due to Exophiala jeanselmei (a case report with description of the fungus). Indian J Pathol Microbiol 1986; 29: 75–78
   PubMedGoogle Scholar
• Pena-Penabad C, Duran MT, Yebra MT, et al. Chromomycosis due to Exophiala jeanselmei in a renal transplant recipient. Eur J Dermatol 2003; 13: 305–307
   PubMed Web of Science ®Google Scholar
• Wang L, Yokoyama K, Miyaji M, Nishimura K. Identification, classification, and phylogeny of the pathogenic species Exophiala jeanselmei and related species by mitochondrial cytochrome b gene analysis. J Clin Microbiol 2001; 39: 4462–4467
   PubMed Web of Science ®Google Scholar
• Masuda M, Naka W, Tajima S, et al. Deoxyribonucleic acid hybridization studies of Exophiala dermatitidis and Exophiala jeanselmei. Microbiol Immunol 1989; 33: 631–639
   PubMed Web of Science ®Google Scholar
• Kawasaki M, Anzawa K, Tanabe H, et al. Intra-species variation of genotypes of Exophiala jeanselmei isolated from patients in Japan. Nippon Ishinkin Gakkai Zasshi 2005; 46: 261–265
   PubMedGoogle Scholar
• Ishizaki H, Kawasaki M, Nishimura K, Miyaji M. Mitochondrial DNA analysis of Exophiala spinifera. Mycopathologia 1995; 131: 67–70
   PubMed Web of Science ®Google Scholar
• Zeng JS, Harrak MJ, Gerritis van den Ende AHG, de Hoog GS. Phylogeny of the Exophiala spinifera clade using multilocus sequences and exploring phylogenetic species. Stud Mycol 2008; in press.
   Google Scholar
• Yamagishi Y, Kawasaki K, Ishizaki H. Mitochondrial DNA analysis of Phialophora verrucosa. Mycoses 1997; 40: 329–334
   PubMed Web of Science ®Google Scholar
• Uijthof JM, de Hoog GS. PCR-ribotyping of type isolates of currently accepted Exophiala and Phaeococcomyces species. Antonie Leeuwenhoek 1995; 68: 35–42
   PubMed Web of Science ®Google Scholar
• Kawasaki M, Ishizaki H, Matsumoto T, et al. Mitochondrial DNA analysis of Exophiala jeanselmei var. lecanii-corni and Exophiala castellanii. Mycopathologia 1999; 146: 75–77
   PubMed Web of Science ®Google Scholar
• Spatafora JW, Mitchell TG, Vilgalys R. Analysis of genes coding for small-subunit rRNA sequences in studying phylogenetics of dematiaceous fungal pathogens. J Clin Microbiol 1995; 33: 1322–1326
   PubMed Web of Science ®Google Scholar
• Abliz P, Fukushima K, Takizawa K, Nishimura K. Identification of pathogenic dematiaceous fungi and related taxa based on large subunit ribosomal DNA D1/D2 domain sequence analysis. FEMS Immunol Med Microbiol 2004; 40: 41–49
   PubMedGoogle Scholar
• Cywinska A, Hunter FF, Hebert PD. Identifying Canadian mosquito species through DNA barcodes. Med Vet Entomol 2006; 20: 413–424
   PubMed Web of Science ®Google Scholar
• Hebert PD, Stoeckle MY, Zemlak TS, Francis CM. Identification of Birds through DNA Barcodes. PLoS Biol 2004; 2: 1657–1663
   Web of Science ®Google Scholar
• Hebert PD, Penton EH, Burns JM, Janzen DH, Hallwachs W. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci USA 2004; 101: 14812–14817
   PubMed Web of Science ®Google Scholar
• Smith MA, Woodley NE, Janzen DH, Hallwachs W, Hebert PD. DNA barcodes reveal cryptic host-specificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae). Proc Natl Acad Sci USA 2006; 103: 3657–3662
   PubMed Web of Science ®Google Scholar
• Hebert PD, Cywinska A, Ball SL, Dewaard JR. Biological identifications through DNA barcodes. Proc Biol Sci 2003; 270: 313–321
   PubMed Web of Science ®Google Scholar
• De Hoog GS, Attili-Angelis D, Vicente VA, Van Den Ende AH, Queiroz-Telles F. Molecular ecology and pathogenic potential of Fonsecaea species. Med Mycol 2004; 42: 405–416
   PubMed Web of Science ®Google Scholar
• Kauserud H, Lie M, Stensrud O, Ohlson M. Molecular characterization of airborne fungal spores in boreal forests of contrasting human disturbance. Mycologia 2005; 97: 1215–1224
   PubMed Web of Science ®Google Scholar
• Sugita T, Takeo K, Hama K, et al. DNA sequence diversity of intergenic spacer I region in the non-lipid-dependent species Malassezia pachydermatis isolated from animals. Med Mycol 2005; 43: 21–26
   PubMed Web of Science ®Google Scholar
• Roose-Amsaleg C, Brygoo Y, Harry M. Ascomycete diversity in soil-feeding termite nests and soils from a tropical rainforest. Environ Microbiol 2004; 6: 462–469
   PubMed Web of Science ®Google Scholar
• Katsu M, Kidd S, Ando A, et al. The internal transcribed spacers and 5.8S rRNA gene show extensive diversity among isolates of the Cryptococcus neoformans species complex. FEMS Yeast Res 2004; 4: 377–388
   PubMed Web of Science ®Google Scholar
• Tamura M, Watanabe K, Mikami Y, Yazawa K, Nishimura K. Molecular characterization of new clinical isolates of Candida albicans and C. dubliniensis in Japan: analysis reveals a new genotype of C. albicans with group I intron. J Clin Microbiol 2001; 39: 4309–4315
   PubMed Web of Science ®Google Scholar
• Sugita T, Takashima M, Ikeda R, Nakase T, Shinoda T. Intraspecies diversity of Cryptococcus albidus isolated from humans as revealed by sequences of the internal transcribed spacer regions. Microbiol Immunol 2001; 45: 291–297
   PubMed Web of Science ®Google Scholar
• Kuninaga S, Natsuaki T, Takeuchi T, Yokosawa R. Sequence variation of the rDNA ITS regions within and between anastomosis groups in Rhizoctonia solani. Curr Genet 1997; 32: 237–243
   PubMed Web of Science ®Google Scholar