Aberrantly expressed long noncoding RNAs in recurrent implantation failure: A microarray related study

References

• Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Bulter, H., Cherry, J.M., et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25:25–29.
   Web of Science ®Google Scholar
• Cambier, L., Plate, M., Sucov, H.M. and Pashmforoush, M. (2014) Nkx2-5 regulates cardiac growth through modulation of Wnt signaling by R-spondin. Dev 141:2959-2971.
   Web of Science ®Google Scholar
• Carlson, M.R., Zhang, B., Fang, Z., Mischel, P.S., Horvath, S and Nelson, S.F. (2006) Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks. BMG genomics 7:1-15.
   Google Scholar
• Coughlan, C., Ledger, W., Wang, Q., Liu, F., Liu, F., Demirol, A., et al. (2014) Recurrent implantation failure: definition and management. Reprod Biomed Online 28 :14–38.
   Google Scholar
• Cuman, C., Van Sinderen, M., Gantier, M.P., Rainczuk, K., Sorby, K., Rombauts, L., et al. (2015) Human blastocyst secreted microRNA regulate endometrial epithelial cell adhesion. EBioMedicine 2:1528-1535.
   Web of Science ®Google Scholar
• Denis, M., Enquobahrie, D.A., Tadesse, M.G., Gelaye, B., Sanchez, S.E., Salazar, M., et al. (2014) Placental Genome and Maternal-Placental Genetic Interactions: A Genome-Wide and Candidate Gene Association Study of Placental Abruption. PLoS One 9:e116346.
   PubMed Web of Science ®Google Scholar
• Farimani Sanoee, M., Alizamir, T., Faramarzi, S., Saidijam, M., Yadegarazari, R., Shabab, N., et al. (2014) Effect of Myomectomy on Endometrial Glutathione Peroxidase 3 (GPx3) and Glycodelin mRNA Expression at the Time of the Implantation Window. Iran Biomed J 2014; 18:60–66.
   PubMedGoogle Scholar
• Fong, B., Watson, P.H and Watson, A.J. (2007) Mouse preimplantation embryo responses to culture medium osmolarity include increased expression of CCM2 and p38 MAPK activation. BMC Dev Biol 7:2.
   Web of Science ®Google Scholar
• Gonen, Y. and Casper, R.F. (1990) Prediction of implantation by the sonographic appearance of the endometrium during controlled ovarian stimulation for in vitro fertilization (IVF). J In Vitro Fert Embryo Transf 7:146-152.
   PubMedGoogle Scholar
• Gupta, S., Ghulmiyyah, J., Sharma, R., Halabi, J. and Agarwal, A. (2014) Power of proteomics in linking oxidative stress and female infertility. Biomed Res Int 2014:1–26.
   Google Scholar
• Guttman, M. and Rinn, J.L. (2012) Modular regulatory principles of large non-coding RNAs. Nature 482:339-346.
   PubMed Web of Science ®Google Scholar
• Guzeloglu-Kayisli, O., Kayisli, U.A. and Taylor, H.S. (2009) The Role of Growth Factors and Cytokines during Implantation: Endocrine and Paracrine Interactions. Semin Reprod Med 27:62-79.
   PubMed Web of Science ®Google Scholar
• Huang, J., Reilly, K.H., Zhang, H.Z. and Wang, H.B. (2015) Clinical evaluation of prostate cancer gene 3 score in diagnosis among Chinese men with prostate cancer and benign prostatic hyperplasia. BMC Urol 15:118.
   Web of Science ®Google Scholar
• Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. and Tanabe, M. (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res 40:109–114.
   Web of Science ®Google Scholar
• Koler, M., Achache, H., Tsafrir, A., Smith, Y., Revel, A. and Reich, R. (2009) Disrupted gene pattern in patients with repeated in vitro fertilization (IVF) failure. Hum Reprod 24:2541-2548.
   PubMed Web of Science ®Google Scholar
• Lopez-Pajares, V., Qu, K., Zhang, J., Webster, D.E., Barajas, B.C., Siprashvili, Z., et al. (2015) A LncRNA-MAF:MAFB transcription factor network regulates epidermal differentiation. Dev Cell 32:693-706.
   PubMed Web of Science ®Google Scholar
• Ma, J., Liu, W., Yan, X., Wang, Q., Zhao, Q., Xue, Y., et al. (2012) Inhibition of Endothelial Cell Proliferation and Tumor Angiogenesis by Up-Regulating NDRG2 Expression in Breast Cancer Cells. PLoS One 7:e32368.
   PubMed Web of Science ®Google Scholar
• McGuire, J.L., Hammond, J.H., Yates, S.D., Chen, D., Haroutunian, V., Meador-Woodruff, J.H., et al. (2014) Altered Serine/Threonine Kinase Activity in Schizophrenia. Brian Res 1568:42-54.
   PubMed Web of Science ®Google Scholar
• Mukherjee, S., Chiu, R., Leung, S.M. and Shields, D. (2007) Fragmentation of the Golgi apparatus: an early apoptotic event independent of the cytoskeleton. Traffic 8:369–378.
   Web of Science ®Google Scholar
• Noyes, R.W., Hertig, A.T. and Rock, J. (1975) Dating the endometrial biopsy. Am J Obstet Gynecol 122:262-263.
   PubMedGoogle Scholar
• Prieto, C., Risueño, A., Fontanillo, C. and De las Rivas, J. (2008) Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles. PLoS ONE 3:e3911.
   Google Scholar
• Pujana, M.A., Han, J.D., Starita, L.M., Stevens, K.N., Tewari, M., Ahn, J.S., et al. (2007) Network modeling links breast cancer susceptibility and centrosome dysfunction. Nat Genet 39:1338-1349.
   PubMed Web of Science ®Google Scholar
• Rinn, J.L. and Chang, H.Y. (2012) Genome regulation by long noncoding RNAs. Ann Rev Biochem 2012; 81:145-166.
   PubMed Web of Science ®Google Scholar
• Sarkissyan, S., Sarkissyan, M., Wu, Y., Cardenas, J., Koeffler, H.P. and Vadgama, J.V. (2014) IGF-1 Regulates Cyr61 Induced Breast Cancer Cell Proliferation and Invasion. PLoS One 9:e103534.
   PubMed Web of Science ®Google Scholar
• Sudoma, I., Goncharova, Y. and Zukin, V. (2011) Optimization of cryocycles by using pinopode detection in patients with multiple implantation failure: preliminary report. Reprod Biomed Online 22:590-596.
   PubMed Web of Science ®Google Scholar
• Sun, P.R., Jia, S.Z., Lin, H., Leng, J.H. and Lang, J.H. (2014) Genome-wide profiling of long noncoding ribonucleic acid expression patterns in ovarian endometriosis by microarray. Fertil Steril 101:1038-1046.
   Web of Science ®Google Scholar
• Suzuki, E. and Nakayama, M. (2007) The mammalian Ced-1 ortholog MEGF10/KIAA1780 displays a novel adhesion pattern. Exp Cell Res 313:2451-2464.
   Web of Science ®Google Scholar
• Tapia, A., Vilos, C., Marin, J.C., Croxatto, H.B. and Devoto, L. (2011) Bioinformatic detection of E47, E2F1 and SREBP1 transcription factors as potential regulators of genes associated to acquisition of endometrial receptivity. Reprod Biol Endocrinol 2011; 9:14.
   Web of Science ®Google Scholar
• Tazuke, S.I. and Giudice, L.C. (1996) Growth factors and cytokines in endometrium, embryonic development, and maternal: embryonicinteractions. Semin Reprod Endocrinol 14:231–245.
   PubMedGoogle Scholar
• Tepekoy, F., Akkoyunlu, G. and Demir, R. (2015) The role of Wnt signaling members in the uterus and embryo during pre-implantation and implantation. J Assist Reprod Genet 32:337-346.
   Web of Science ®Google Scholar
• Thornhill, A.R., Die-Smulders, C.E., Geraedts, J.P., Harper, J.C., Harton, G.L., Lavery, S.A., et al. (2005) ESHRE PGD Consortium ‘Best practice guidelines for clinical preimplantation genetic diagnosis (PGD) and preimplantation genetic screening (PGS)’. Human Reprod 20:35-48.
   Web of Science ®Google Scholar
• Timeva, T., Shterev, A. and Kyurkchiev, S. (2014) Recurrent implantation failure: the role of the endometrium. J Reprod Infertil 15:173-183.
   PubMedGoogle Scholar
• Wang, Y., Li, Y., Yang, Z., Liu, K. and Wang, D. (2015) Genome-wide microarray analysis of long non-coding RNAs in eutopic secretory endometrium with endometriosis. Cell Physiol Biochem 37:2231-2245.
   Web of Science ®Google Scholar
• Wei, J.T., Feng, Z., Partin, A.W., Brown, E., Thompson, I., Sokoll, L., et al. (2014) Can Urinary PCA3 Supplement PSA in the Early Detection of Prostate Cancer? J Clin Oncol 32 :4066–4072.
   Google Scholar
• Yang, J., Chen, L., Zhang, X., Zhou, Y., Zhang, D., Huo, M., et al. (2008) PPARs and female reproduction: evidence from genetically manipulated mice. PPAR Res 2008:723243
   PubMedGoogle Scholar
• Yang, L., Zhang, J., Jiang, A., Liu, Q., Li, C., Yang, C., et al. (2015) Expression profile of long non-coding RNAs is altered in endometrial cancer. Int J Clin Exp Med 8:5010-5021.
   Web of Science ®Google Scholar
• Zhang, S., Lin, H., Kong, S., Wang, S., Wang, H., Wang, H., et al. (2013) Physiological and molecular determinants of embryo implantation. Mol Aspects Med 34:939–980.
   PubMed Web of Science ®Google Scholar
• Zhang, X., Wu, D., Chen, L., Li, X., Yang, J., Fan, D., et al. (2014a) RAID: a comprehensive resource for human RNA-associated (RNA–RNA/RNA–protein) interaction. RNA 20:989–993.
   Web of Science ®Google Scholar
• Zhang, Z., Yu, H., Huang, J., Faouzi, M., Schmitz, C., Penner, R., et al. (2014b) The TRPM6 Kinase Domain Determines the Mg·ATP Sensitivity of TRPM7/M6 Heteromeric Ion Channels. J Biol Chem 289:5217–5227.
   Web of Science ®Google Scholar
• Zhu, D., Bungart, B.L., Yang, X., Zhumadilov, Z., Lee, J.C. and Askarova, S. (2015) Role of membrane biophysics in Alzheimer’s–related cell pathways. Front Neurosci 9:186.
   Web of Science ®Google Scholar