Advanced search
Publication Cover
International Journal of Green Nanotechnology Volume 4, 2012 - Issue 3
Journal homepage
16
Views
0
CrossRef citations to date
0
Altmetric
PHYSICS AND CHEMISTRY

Application of DNA Graphs to Whole Genome Sequencing

Nafiseh Jafarzadeh Department of Mathematics, Faculty of Mathematical Sciences, Tarbiat Modares University, Tehran, Iran
&
Ali Iranmanesh Department of Mathematics, Faculty of Mathematical Sciences, Tarbiat Modares University, Tehran, Iran
Pages 373-376 | Received 18 Jan 2012, Accepted 23 Apr 2012, Published online: 19 Feb 2013

REFERENCES

  • Watson , J. D. and Crick , F. H. C. 1953 . Molecular structure of nucleic acids - a structure for deoxyribose nucleic acid . Nature , 171 : 737 – 738 .
  • Ludry , R. M. and Waterman , M. S. 1995 . A new algorithm for DNA sequencing assembly . J. Comput. Biol. , 2 : 291 – 306 .
  • Pevzner , P. A. 1995 . DNA physical mapping and alternating Eulerian cycles in colored graphs . Algorithmica , 13 : 77 – 105 .
  • Pevzner , P. A. , Tang , H. and Waterman , M. S. 2001 . A new approach to fragment assembly in DNA sequencing . RECOMB , 1 : 256 – 267 .
  • Watson , J. D. and Crick , F. H. C. 2003 . Molecular structure of nucleic acids . Am J Psych , 160 : 623 – 624 .
  • Blazewicz , J. , Hertz , A. and Kobler , D. 2003 . On some properties of DNA graphs . Discrete Appl Math , 1 : 98 – 114 .
  • Hao , J. 2005 . The adjoints of DNA graphs . J. Math. Chem. , 37 : 333 – 346 .
  • Li , X. and Zhang , H. 2007 . Characterizations for some types of DNA graphs . J. Math. Chem. , 42 : 65 – 79 .
  • Liu , G. , Yin , Z. , Xu , J. and Dong , Y. 2005 . Algorithm of graph isomorphism with three dimensional DNA graph structures . Progr. Natur. Sci. (English Ed) , 15 : 181 – 184 .
  • Sa-Ardyen , P. and Jonoska , N. 2003 . Self-assembling DNA graphs . Nat. Comput. , 2 : 427 – 438 .
  • Pendavingh , R. , Schuurman , P. and Woeginger , G. 2003 . Recognizing DNA graphs is difficult . Discrete Appl. Math. , 12 : 785 – 794 .
  • Blazewicz , J. , Bryja , M. , Figlerowicz , M. , Gawron , P. , Kasprzak , M. , Kirton , E. , Platt , D. , Przybytek , J. , Swiercz , A. and Szajkowski , L. 2009 . Whole genome assembly from 454 sequencing output via modified DNA graph concept . Comput. Biol. Chem. , 33 : 224 – 230 .
  • Wang , S. Y. , Yuan , J. and Lin , S. 2008 . DNA labeled graphs with DNA computing . Sci. China Series A Mathematics , 51 : 437 – 452 .
  • Chartrand , G. and Lesniak , L. 1986 . Graphs and Digraphs, , 2nd Ed. , Monterey , CA : Wadsworth & Brooks, Cole .
  • Pevzner , P. A. , Tang , H. and Waterman , M. S. 2001 . An Eulerian path approach to DNA fragment assembly . Proc. Nat. Acad. Sci. , 98 : 9748 – 9753 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Order Reprints Request Corporate Permissions

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

Request Academic Permissions

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.