A systematic review of associations between gut microbiota composition and growth failure in preterm neonates

References

• Subramanian S, Huq S, Yatsunenko T, Haque R, Mahfuz M, Alam MA, Benezra A, DeStefano J, Meier MF, Muegge BD, et al. Persistent gut microbiota immaturity in malnourished Bangladeshi children. Nature. 2014;510(7505):417–16. doi:10.1038/nature13421.
   PubMed Web of Science ®Google Scholar
• Blanton LV, Charbonneau MR, Salih T, Barratt MJ, Venkatesh S, Ilkaveya O, Subramanian S, Manary MJ, Trehan I, Jorgensen JM, et al. Gut bacteria that prevent growth impairments transmitted by microbiota from malnourished children. Science. 2016;351(6275):aad3311. doi:10.1126/science.aad3311.
   PubMed Web of Science ®Google Scholar
• Smith MI, Yatsunenko T, Manary MJ, Trehan I, Mkakosya R, Cheng J, Kau AL, Rich SS, Concannon P, Mychaleckyj JC, et al. Gut microbiomes of Malawian twin pairs discordant for kwashiorkor. Science. 2013;339(6119):548–554. doi:10.1126/science.1229000.
   PubMed Web of Science ®Google Scholar
• Hiltunen H, Hanani H, Luoto R, Turjeman S, Ziv O, Isolauri E, Salminen S, Koren O, Rautava S. Preterm infant meconium microbiota transplant induces growth failure, inflammatory activation, and metabolic disturbances in germ-free mice. Cell Rep Med. 2021;2(11):100447. doi:10.1016/j.xcrm.2021.100447.
   PubMedGoogle Scholar
• Gall ML, Gallois M, Sève B, Louveau I, Holst JJ, Oswald IP, Lallès J-P, Guilloteau P. Comparative effect of orally administered sodium butyrate before or after weaning on growth and several indices of gastrointestinal biology of piglets. Br J Nutr. 2009;102(9):1285–1296. doi:10.1017/S0007114509990213.
   PubMed Web of Science ®Google Scholar
• Shin SC, Kim S-H, You H, Kim B, Kim AC, Lee K-A, Yoon J-H, Ryu J-H, Lee W-J. Drosophila microbiome modulates host developmental and metabolic homeostasis via insulin signaling. Science. 2011;334(6056):670–674. doi:10.1126/science.1212782.
   PubMed Web of Science ®Google Scholar
• Lu H, Su S, Ajuwon KM. Butyrate supplementation to gestating sows and piglets induces muscle and adipose tissue oxidative genes and improves growth performance. J Anim Sci. 2012;90(suppl_4):430–432. doi:10.2527/jas.53817.
   PubMedGoogle Scholar
• Tyagi AM, Yu M, Darby TM, Vaccaro C, Li J-Y, Owens JA, Hsu E, Adams J, Weitzmann MN, Jones RM, et al. The microbial metabolite butyrate stimulates bone formation via T regulatory cell-mediated regulation of WNT10B Expression. Immunity. 2018;49(6):1116–1131.e7. doi:10.1016/j.immuni.2018.10.013.
   PubMed Web of Science ®Google Scholar
• Fukuda S, Toh H, Hase K, Oshima K, Nakanishi Y, Yoshimura K, Tobe T, Clarke JM, Topping DL, Suzuki T, et al. Bifidobacteria can protect from enteropathogenic infection through production of acetate. Nature. 2011;469(7331):543–547. doi:10.1038/nature09646.
   PubMed Web of Science ®Google Scholar
• Seki D, Mayer M, Hausmann B, Pjevac P, Giordano V, Goeral K, Unterasinger L, Klebermaß-Schrehof K, De Paepe K, Van de Wiele T, et al. Aberrant gut-microbiota-immune-brain axis development in premature neonates with brain damage. Cell Host Microbe. 2021;29(10):1558+. doi:10.1016/j.chom.2021.08.004.
   PubMed Web of Science ®Google Scholar
• Charbonneau MR, O’donnell D, Blanton LV, Totten S, Davis JC, Barratt M, Cheng J, Guruge J, Talcott M, Bain J, et al. Sialylated milk Oligosaccharides promote microbiota-dependent growth in models of infant undernutrition. Cell. 2016;164(5):859–871. doi:10.1016/j.cell.2016.01.024.
   PubMed Web of Science ®Google Scholar
• Cowardin CA, Ahern PP, Kung VL, Hibberd MC, Cheng J, Guruge JL, Sundaresan V, Head RD, Barile D, Mills DA, et al. Mechanisms by which sialylated milk oligosaccharides impact bone biology in a gnotobiotic mouse model of infant undernutrition. Proc Natl Acad Sci. 2019;116(24):11988–11996. doi:10.1073/pnas.1821770116.
   PubMed Web of Science ®Google Scholar
• Larke JA, Kuhn-Riordon K, Taft DH, Sohn K, Iqbal S, Underwood MA, Mills DA, Slupsky CM. Preterm infant fecal microbiota and metabolite profiles are modulated in a probiotic specific manner. J Pediatr Gastroenterol Nutr. 2022;75(4):535–542. doi:10.1097/MPG.0000000000003570.
   PubMed Web of Science ®Google Scholar
• Chichlowski M, De Lartigue G, German JB, Raybould HE, Mills DA. Bifidobacteria isolated from infants and cultured on human milk oligosaccharides affect intestinal epithelial function. J Pediatr Gastroenterol Nutr. 2012;55(3):321–327. doi:10.1097/MPG.0b013e31824fb899.
   PubMed Web of Science ®Google Scholar
• Yan J, Herzog JW, Tsang K, Brennan CA, Bower MA, Garrett WS, Sartor BR, Aliprantis AO, Charles JF. Gut microbiota induce IGF-1 and promote bone formation and growth. Proc Natl Acad Sci. 2016;113(47). doi:10.1073/pnas.1607235113.
   Web of Science ®Google Scholar
• Schwarzer M, Makki K, Storelli G, Machuca-Gayet I, Srutkova D, Hermanova P, Martino ME, Balmand S, Hudcovic T, Heddi A, et al. Lactobacillus plantarum strain maintains growth of infant mice during chronic undernutrition. Science. 2016;351(6275):854–857. doi:10.1126/science.aad8588.
   PubMed Web of Science ®Google Scholar
• Blakstad EW, Korpela K, Lee S, Nakstad B, Moltu SJ, Strømmen K, Rønnestad AE, Brække K, Iversen PO, de Vos WM, et al. Enhanced nutrient supply and intestinal microbiota development in very low birth weight infants. Pediatr Res. 2019;86(3):323–332. doi:10.1038/s41390-019-0412-x.
   PubMed Web of Science ®Google Scholar
• Martí M, Spreckels JE, Ranasinghe PD, Wejryd E, Marchini G, Sverremark-Ekström E, Jenmalm MC, Abrahamsson T. Effects of Lactobacillus reuteri supplementation on the gut microbiota in extremely preterm infants in a randomized placebo-controlled trial. Cell Rep Med. 2021;2(3):100206. doi:10.1016/j.xcrm.2021.100206.
   PubMedGoogle Scholar
• Arboleya S, Martinez-Camblor P, Solis G, Suárez M, Fernández N, de Los Reyes-Gavilán CG, Gueimonde M. Intestinal microbiota and weight-gain in preterm neonates. Front Microbiol. 2017;8:8. doi:10.3389/fmicb.2017.00183.
   PubMed Web of Science ®Google Scholar
• Grier A, Qiu X, Bandyopadhyay S, Holden-Wiltse J, Kessler HA, Gill AL, Hamilton B, Huyck H, Misra S, Mariani TJ, et al. Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth. MICROBIOME. 2017;5(1):5. doi:10.1186/s40168-017-0377-0.
   PubMedGoogle Scholar
• Younge NE, Newgard CB, Cotten CM, Goldberg RN, Muehlbauer MJ, Bain JR, Stevens RD, O’connell TM, Rawls JF, Seed PC, et al. Disrupted maturation of the microbiota and metabolome among extremely preterm infants with postnatal growth failure. Sci Rep. 2019;9(1):8167. doi:10.1038/s41598-019-44547-y.
   PubMedGoogle Scholar
• Yee AL, Miller E, Dishaw LJ, Gordon, J.M. Ji, M. Dutra, S. Ho, Thao TB. Gilbert, Jack A. Groer, M. Longitudinal microbiome composition and stability correlate with increased weight and length of very-low-birth-weight infants Whiteson KL ed .mSystems. 2019;4(1):e00229–18. 10.1128/mSystems.00229-18
   PubMed Web of Science ®Google Scholar
• Zhang J, Dai Y, Fan S, Zhang K, Shuai C, Bian X, Hui L, Wu Z, Zhang J, Guo Z, et al. Association between extrauterine growth restriction and changes of intestinal flora in Chinese preterm infants. J Dev Orig Health Dis. 2019;10(5):513–521. doi:10.1017/S2040174419000084.
   PubMed Web of Science ®Google Scholar
• Terrazzan Nutricionist AC, Procianoy RS, Roesch LFW, Corso AL, Dobbler PT, Silveira RC, Antunes LCM. Meconium microbiome and its relation to neonatal growth and head circumference catch-up in preterm infants. PLoS One. 2020;15(9):e0238632. doi:10.1371/journal.pone.0238632.
   PubMed Web of Science ®Google Scholar
• Heida FH, Kooi EMW, Wagner J, Nguyen T-Y, Hulscher JBF, van Zoonen AGJF, Bos AF, Harmsen HJM, de Goffau MC. Weight shapes the intestinal microbiome in preterm infants: results of a prospective observational study. BMC Microbiol. 2021;21(1):219. doi:10.1186/s12866-021-02279-y.
   PubMed Web of Science ®Google Scholar
• Shen W, Qiu W, Lin Q, Zeng C, Liu Y, Huang W, Zhou H. The gut microbiome of preterm infants treated with Aminophylline is closely related to the occurrence of feeding intolerance and the weight Gain. Front Nutr. 2022;9:905839. doi:10.3389/fnut.2022.905839.
   PubMed Web of Science ®Google Scholar
• Huang YE, Shen X, Yin D, Lan S, Lu Y, Zhou P, Ma L, Zhang Y, Sheng Y, Zhang Y, et al. Disrupted establishment of anaerobe and facultative anaerobe balance in preterm infants with extrauterine growth restriction. Front Pediatr. 2022;10:935458. doi:10.3389/fped.2022.935458.
   PubMed Web of Science ®Google Scholar
• Ding YX, Wang SN, Cui H, Jiang LN. Effect of intestinal microecology on postnatal weight gain in very preterm infants in intensive care units. Gut Pathog. 2021;13(1):49. doi:10.1186/s13099-021-00445-1.
   PubMed Web of Science ®Google Scholar
• Li H, He Z, Gao D, Lv Y, Zhou Q, Xiao B, Huang W. Characteristics of the intestinal microbiota in very low birth weight infants with extrauterine growth restriction. Front Pediatr. 2019;7:99. doi:10.3389/fped.2019.00099.
   PubMed Web of Science ®Google Scholar
• Tadros JS, Llerena A, Sarkar A, Johnson R, Miller EM, Gray HL, Ho TTB. Postnatal growth and gut microbiota development influenced early childhood growth in preterm infants. Front Pediatr. 2022;10:10. doi:10.3389/fped.2022.850629.
   Web of Science ®Google Scholar
• Ford SL, Lohmann P, Preidis GA, Gordon PS, O’Donnell A, Hagan J, Venkatachalam A, Balderas M, Luna RA, Hair AB. Improved feeding tolerance and growth are linked to increased gut microbial community diversity in very-low-birth-weight infants fed mother’s own milk compared with donor breast milk. Am J Clin Nutr. 2019;109(4):1088–1097. doi:10.1093/ajcn/nqz006.
   PubMed Web of Science ®Google Scholar
• Fenton TR, Kim JH. A systematic review and meta-analysis to revise the Fenton growth chart for preterm infants. BMC Pediatr. 2013;13(1):59. doi:10.1186/1471-2431-13-59.
   PubMed Web of Science ®Google Scholar
• Fenton TR, Anderson D, Groh-Wargo S, Hoyos A, Ehrenkranz RA, Senterre T. An attempt to standardize the calculation of growth velocity of preterm infants—evaluation of practical bedside methods. J Pediatr. 2018;196:77–83. doi:10.1016/j.jpeds.2017.10.005.
   PubMed Web of Science ®Google Scholar
• Goldberg DL, Becker PJ, Brigham K, Carlson S, Fleck L, Gollins L, Sandrock M, Fullmer M, Van Poots HA. Identifying malnutrition in preterm and neonatal populations: recommended Indicators. J Acad Nutr Diet. 2018;118(9):1571–1582. doi:10.1016/j.jand.2017.10.006.
   PubMed Web of Science ®Google Scholar
• Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, Fierer N, Knight R. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci. 2010;107(26):11971–11975. doi:10.1073/pnas.1002601107.
   PubMed Web of Science ®Google Scholar
• Vael C, Verhulst SL, Nelen V, Goossens H, Desager KN. Intestinal microflora and body mass index during the first three years of life: an observational study. Gut Pathog. 2011;3(1):8. doi:10.1186/1757-4749-3-8.
   PubMed Web of Science ®Google Scholar
• González S, Selma-Royo M, Arboleya S, Martínez-Costa C, Solís G, Suárez M, Fernández N, de Los Reyes-Gavilán CG, Díaz-Coto S, Martínez-Camblor P, et al. Levels oF predominant intestinal microorganisms in 1 month-old full-term babies and weight gain during the first year of life. Nutrients. 2021;13(7):2412. doi:10.3390/nu13072412.
   PubMed Web of Science ®Google Scholar
• Olm MR, Bhattacharya N, Crits-Christoph A, Firek BA, Baker R, Song YS, Morowitz MJ, Banfield JF. Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria. Sci Adv. 2019;5(12):eaax5727. doi:10.1126/sciadv.aax5727.
   PubMed Web of Science ®Google Scholar
• Chen Y, Brook TC, Soe CZ, O’Neill I, Alcon-Giner C, Leelastwattanagul O, Phillips S, Caim S, Clarke P, Hall LJ, et al. Preterm infants harbour diverse Klebsiella populations, including atypical species that encode and produce an array of antimicrobial resistance- and virulence-associated factors. Microbial Genomics. 2020;6(6):e000377. doi:10.1099/mgen.0.000377.
   PubMed Web of Science ®Google Scholar
• Vallès Y, Artacho A, Pascual-García A, Ferrús ML, Gosalbes MJ, Abellán JJ, Francino MP. Microbial succession in the gut: directional trends of taxonomic and functional change in a Birth Cohort of Spanish Infants. PLoS Genet. 2014;10(6):e1004406. doi:10.1371/journal.pgen.1004406.
   PubMed Web of Science ®Google Scholar
• Sakata H, Yoshioka H, Fujita K. Development of the intestinal flora in very low birth weight infants compared to normal full-term newborns. Eur J Pediatr. 1985;144(2):186–190. doi:10.1007/BF00451911.
   PubMed Web of Science ®Google Scholar
• Pannaraj PS, Li F, Cerini C, Bender JM, Yang S, Rollie A, Adisetiyo H, Zabih S, Lincez PJ, Bittinger K, et al. Association between breast milk bacterial communities and establishment and development of the infant gut microbiome. JAMA Pediatr. 2017;171(7):647–654. doi:10.1001/jamapediatrics.2017.0378.
   PubMed Web of Science ®Google Scholar
• Hill CJ, Lynch DB, Murphy K, Ulaszewska M, Jeffery IB, O’shea CA, Watkins C, Dempsey E, Mattivi F, Tuohy K, et al. Evolution of gut microbiota composition from birth to 24 weeks in the INFANTMET Cohort. Microbiome. 2017;5(1): no pagination. doi:10.1186/s40168-016-0213-y.
   Google Scholar
• Brooks B, Olm MR, Firek BA, Baker R, Geller-McGrath D, Reimer SR, Soenjoyo KR, Yip JS, Dahan D, Thomas BC, et al. The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms. Microbiome. 2018;6(1):112. doi:10.1186/s40168-018-0493-5.
   PubMedGoogle Scholar
• Fenton TR, Cormack B, Goldberg D, Nasser R, Alshaikh B, Eliasziw M, Hay WW, Hoyos A, Anderson D, Bloomfield F, et al. “Extrauterine growth restriction” and “postnatal growth failure” are misnomers for preterm infants. J Perinatol. 2020;40(5):704–714. doi:10.1038/s41372-020-0658-5.
   PubMed Web of Science ®Google Scholar
• Vujkovic-Cvijin I, Sklar J, Jiang L, Natarajan L, Knight R, Belkaid Y. Host variables confound gut microbiota studies of human disease. Nature. 2020;587(7834):448–454. doi:10.1038/s41586-020-2881-9.
   PubMed Web of Science ®Google Scholar
• Vernocchi P, Del Chierico F, Putignani L. Gut microbiota profiling: metabolomics based approach to unravel compounds affecting human health. Front Microbiol. 2016;7:Accessed February 24, 2023. 10.3389/fmicb.2016.01144
   Web of Science ®Google Scholar
• Muller E, Algavi YM, Borenstein E. The gut microbiome-metabolome dataset collection: a curated resource for integrative meta-analysis. Npj Biofilms Microbiomes. 2022;8(1):1–7. doi:10.1038/s41522-022-00345-5.
   PubMed Web of Science ®Google Scholar
• Mirzayi C, Renson A, Zohra F, Sansone S-A, Zohra F, Elsafoury S, Geistlinger L, Kasselman LJ, Eckenrode K, van de Wijgert J, et al. Reporting guidelines for human microbiome research: the STORMS checklist. Nat Med. 2021;27(11):1885–1892. doi:10.1038/s41591-021-01552-x.
   PubMed Web of Science ®Google Scholar
• Page MJ, McKenzie JE, Bossuyt PM, Boutron I, Hoffmann TC, Mulrow CD, Shamseer L, Tetzlaff JM, Akl EA, Brennan SE, et al. The PRISMA 2020 statement: an updated guideline for reporting systematic reviews. PLoS Med. 2021;18(3):e1003583. doi:10.1371/journal.pmed.1003583.
   PubMed Web of Science ®Google Scholar