Citizen science helps to raise awareness about gut microbiome health in people at risk of developing non-communicable diseases

References

• Cannuscio CC, Hillier A, Karpyn A, Glanz K. The social dynamics of healthy food shopping and store choice in an urban environment. Social Sci Med. 2014;122:13–15. 1982. doi:10.1016/j.socscimed.2014.10.005.
   PubMed Web of Science ®Google Scholar
• Vásquez VB, Lanza D, Hennessey-Lavery S, Facente S, Halpin HA, Minkler M. Addressing food security through public policy action in a community-based participatory research partnership. Health Promot Pract. 2007;8(4):342–349. doi:10.1177/1524839906298501.
   PubMedGoogle Scholar
• Gravina L, Jauregi A, Fernández-Aedo I, Díez J, Gittelsohn J, Colón-Ramos U, Franco MR. Residents’ Insights on their local food environment and dietary behaviors: a cross-city comparison using photovoice in Spain. Int J Environ Res Public Health. 2021;18(19):18. doi:10.3390/ijerph181910134.
   Web of Science ®Google Scholar
• Mabry J, Farris PE, Forro VA, Findholt NE, Purnell JQ, Davis MM. Environmental, behavioral, and cultural factors that influence healthy eating in rural women of childbearing age: findings from a PhotoVoice study. Glob Qual Nurs Res. 2016;3:2333393615622176. doi:10.1177/2333393615622176.
   Google Scholar
• Pradeilles R, Irache A, Wanjohi MN, Holdsworth M, Laar A, Zotor F, Tandoh A, Klomegah S, Graham F, Muthuri SK, et al. Urban physical food environments drive dietary behaviours in Ghana and Kenya: A photovoice study. Health & Place. 2021;71:102647. doi:10.1016/j.healthplace.2021.102647.
   PubMed Web of Science ®Google Scholar
• Spencer RA, Numer M, Rehman L, Kirk SFL. Picture perfect? Gazing into girls’ health, physical activity, and nutrition through photovoice. Int J Qual Stud Health Well-Being. 2021;16(1):1874771. doi:10.1080/17482631.2021.1874771.
   PubMed Web of Science ®Google Scholar
• Baig AA, Stutz MR, Fernandez Piñeros P, Benitez A, Gao Y, Quinn MT, Solomon MC, Sanchez-Johnsen L, Burnet DL, Chin MH. Using photovoice to promote diabetes self-management in Latino patients. Transl Behav Med. 2019;9(6):1151–1156. doi:10.1093/tbm/ibz082.
   PubMed Web of Science ®Google Scholar
• Florian J, NMSO R, Quintiliani LM, Truong V, Feng Y, Bloch PP, Russinova ZL, Lasser KE. Using photovoice and asset mapping to inform a community-based diabetes intervention, Boston, Massachusetts, 2015. Prev Chronic Dis. 2016;13:E107. doi:10.5888/pcd13.160160.
   PubMed Web of Science ®Google Scholar
• Wang C, Burris MA. Photovoice: concept, methodology, and use for participatory needs assessment. Health Educ Behav Off Publ Soc Public Health Educ. 1997;24(3):369–387. doi:10.1177/109019819702400309.
   Google Scholar
• Wiggins A, Wilbanks J. The rise of citizen science in health and biomedical research. Am J Bioeth AJOB. 2019;19(8):3–14. doi:10.1080/15265161.2019.1619859.
   PubMed Web of Science ®Google Scholar
• Vohland K, Land-Zandstra A, Ceccaroni L, Lemmens R, Perelló J, Ponti M, Samson R, Wagenknecht K, Vohland K, Land-Zandstra A, et al. editors. The science of citizen science. Cham: Springer International Publishing; 2021. 10.1007/978-3-030-58278-4
   Google Scholar
• Budreviciute A, Damiati S, Sabir DK, Onder K, Schuller-Goetzburg P, Plakys G, Katileviciute A, Khoja S, Kodzius R. Management and prevention strategies for non-communicable diseases (NCDs) and their risk factors. Front Public Health. 2020;8:574111. doi:10.3389/fpubh.2020.574111.
   PubMed Web of Science ®Google Scholar
• World Health Organization. Non communicable diseases. [Internet]. 2021 [accessed 2022 May 7]. https://www.who.int/news-room/fact-sheets/detail/noncommunicable-diseases.
   Google Scholar
• Kovatcheva-Datchary P, Arora T. Nutrition, the gut microbiome and the metabolic syndrome. Best Pract Res Clin Gastroenterol. 2013;27(1):59–72. doi:10.1016/j.bpg.2013.03.017.
   PubMed Web of Science ®Google Scholar
• Harakeh SM, Khan I, Kumosani T, Barbour E, Almasaudi SB, Bahijri SM, Alfadul SM, Ajabnoor GMA, Azhar EI. Gut microbiota: a contributing factor to obesity. Front Cell Infect Microbiol. 2016;6. doi:10.3389/fcimb.2016.00095.
   PubMed Web of Science ®Google Scholar
• Noce A, Marrone G, Di Daniele F, Ottaviani E, Wilson Jones G, Bernini R, Romani A, Rovella V. Impact of gut microbiota composition on onset and progression of chronic non-communicable diseases. Nutrients. 2019;11(5):11. doi:10.3390/nu11051073.
   Web of Science ®Google Scholar
• Levy M, Blacher E, Elinav E. Microbiome, metabolites and host immunity. Curr Opin Microbiol. 2017;35:8–15. doi:10.1016/j.mib.2016.10.003.
   PubMed Web of Science ®Google Scholar
• Sekirov I, Russell SL, Antunes LCM, Finlay BB. Gut microbiota in health and disease. Physiol Rev. 2010;90(3):859–904. doi:10.1152/physrev.00045.2009.
   PubMed Web of Science ®Google Scholar
• Finlay BB. Are noncommunicable diseases communicable? Science. 2020;367(6475):250–251. doi:10.1126/science.aaz3834.
   PubMed Web of Science ®Google Scholar
• Bu F, Yao X, Lu Z, Yuan X, Chen C, Li L, Li Y, Jiang F, Zhu L, Shi G, et al. Pathogenic or therapeutic: the mediating role of gut microbiota in non-communicable diseases. Front Cell Infect Microbiol. 2022;12:906349. doi:10.3389/fcimb.2022.906349.
   PubMed Web of Science ®Google Scholar
• The Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486(7402):207–214. doi:10.1038/nature11234.
   PubMed Web of Science ®Google Scholar
• Rothschild D, Weissbrod O, Barkan E, Kurilshikov A, Korem T, Zeevi D, Costea PI, Godneva A, Kalka IN, Bar N, et al. Environment dominates over host genetics in shaping human gut microbiota. Nature. 2018;555(7695):210–215. doi:10.1038/nature25973.
   PubMed Web of Science ®Google Scholar
• Ahn J, Hayes RB. Environmental influences on the human microbiome and implications for noncommunicable disease. Annu Rev Public Health. 2021;42(1):277–292. doi:10.1146/annurev-publhealth-012420-105020.
   PubMedGoogle Scholar
• Martinez KB, Leone V, Chang EB. Western diets, gut dysbiosis, and metabolic diseases: Are they linked? Gut Microbes. 2017;8(2):130–142. doi:10.1080/19490976.2016.1270811.
   PubMed Web of Science ®Google Scholar
• Rinninella E, Cintoni M, Raoul P, Lopetuso LR, Scaldaferri F, Pulcini G, Miggiano GAD, Gasbarrini A, Mele MC. Food components and dietary habits: keys for a healthy gut microbiota composition. Nutrients. 2019;11(10):11. doi:10.3390/nu11102393.
   Web of Science ®Google Scholar
• Valles-Colomer M, Blanco-Míguez A, Manghi P, Asnicar F, Dubois L, Golzato D, Armanini F, Cumbo F, Huang KD, Manara S, et al. The person-to-person transmission landscape of the gut and oral microbiomes. Nature. 2023;614(7946):125–135. doi:10.1038/s41586-022-05620-1.
   PubMed Web of Science ®Google Scholar
• Shivani S, Chattopadhyay A, Chuang EY. Targeting the gut microbiome for non-communicable diseases: present and future. Ann Transl Med. 2021;9(5):361. doi:10.21037/atm-21-144.
   PubMed Web of Science ®Google Scholar
• Armet AM, Deehan EC, O’Sullivan AF, Mota JF, Field CJ, Prado CM, Lucey AJ, Walter J. Rethinking healthy eating in light of the gut microbiome. Cell Host & Microbe. 2022;30(6):764–785. doi:10.1016/j.chom.2022.04.016.
   PubMed Web of Science ®Google Scholar
• Shan Y, Segre JA, Chang EB. Responsible stewardship for communicating microbiome research to the press and public. Nat Med. 2019;25(6):872–874. doi:10.1038/s41591-019-0470-y.
   PubMed Web of Science ®Google Scholar
• Liebenberg L. Thinking critically about photovoice: achieving empowerment and social change. Int J Qual Methods. 2018;17(1):1609406918757631. doi:10.1177/1609406918757631.
   Web of Science ®Google Scholar
• Kennedy ET, Ohls J, Carlson S, Fleming K. The healthy eating index: design and applications. J Am Diet Assoc. 1995;95(10):1103–1108. doi:10.1016/S0002-8223(95)00300-2.
   PubMed Web of Science ®Google Scholar
• World Health Organization. Global physical activity questionnaire (GPAQ) [Internet]. 2002 [accessed May 7 2022]. https://www.who.int/teams/noncommunicable-diseases/surveillance/systems-tools/physical-activity-surveillance
   Google Scholar
• Pai S, Bader GD. Patient similarity networks for precision medicine. J Mol Biol. 2018;430(18):2924–2938. doi:10.1016/j.jmb.2018.05.037.
   PubMed Web of Science ®Google Scholar
• Gloor GB, Macklaim JM, Pawlowsky-Glahn V, Egozcue JJ. Microbiome datasets are compositional: and this is not optional. Front Microbiol. 2017;8:2224. doi:10.3389/fmicb.2017.02224.
   PubMed Web of Science ®Google Scholar
• Kurtz ZD, Müller CL, Miraldi ER, Littman DR, Blaser MJ, Bonneau RA, von Mering C. Sparse and compositionally robust inference of microbial ecological networks. PLoS Comput Biol. 2015;11(5):e1004226. doi:10.1371/journal.pcbi.1004226.
   PubMed Web of Science ®Google Scholar
• Bauer E, Thiele I, Sangwan N. From network analysis to functional metabolic modeling of the human gut microbiota. mSystems. 2018;3(3):3. doi:10.1128/mSystems.00209-17.
   Web of Science ®Google Scholar
• Caballero SG, Ordoñez S, Fuentes G, Zambrano LJM. Photobook #PictureYourMicrobes. [Internet]. 2021. doi:10.5281/zenodo.5682942.
   Google Scholar
• Wilkinson JE, Franzosa EA, Everett C, Li C, Hu FB, Wirth DF, Song M, Chan AT, Rimm E, Garrett WS, et al. A framework for microbiome science in public health. Nat Med. 2021;27(5):766–774. doi:10.1038/s41591-021-01258-0.
   PubMed Web of Science ®Google Scholar
• Hartman MR, Harrington KT, Etson CM, Fierman MB, Slonim DK, Walt DR, Fahnert B. Personal microbiomes and next-generation sequencing for laboratory-based education. FEMS Microbiol Lett. 2016;363(23):fnw266. doi:10.1093/femsle/fnw266.
   PubMed Web of Science ®Google Scholar
• Lyles JK, Oli M. The student-centered classroom: the new gut feeling. FEMS Microbiol Lett. 2020;367(22). doi:10.1093/femsle/fnaa191.
   Web of Science ®Google Scholar
• Li L, Cheng W-Y, Glicksberg BS, Gottesman O, Tamler R, Chen R, Bottinger EP, Dudley JT. Identification of type 2 diabetes subgroups through topological analysis of patient similarity. Sci Transl Med. 2015;7(311):311ra174. doi:10.1126/scitranslmed.aaa9364.
   PubMed Web of Science ®Google Scholar
• Wang B, Mezlini AM, Demir F, Fiume M, Tu Z, Brudno M, Haibe-Kains B, Goldenberg A. Similarity network fusion for aggregating data types on a genomic scale. Nat Methods. 2014;11(3):333–337. doi:10.1038/nmeth.2810.
   PubMed Web of Science ®Google Scholar
• Pai S, Hui S, Isserlin R, Shah MA, Kaka H, Bader GD. netDx: interpretable patient classification using integrated patient similarity networks. Mol Syst Biol. 2019;15(3):e8497. doi:10.15252/msb.20188497.
   PubMed Web of Science ®Google Scholar
• Banerjee S, Schlaeppi K, van der Heijden MGA. Keystone taxa as drivers of microbiome structure and functioning. Nat Rev Microbiol. 2018;16:567–576. doi:10.1038/s41579-018-0024-1.
   PubMed Web of Science ®Google Scholar
• Wang B, Kong Q, Li X, Zhao J, Zhang H, Chen W, Wang G. A high-fat diet increases gut microbiota biodiversity and energy expenditure due to nutrient difference. Nutrients. 2020;12(10):12. doi:10.3390/nu12103197.
   Web of Science ®Google Scholar
• Wang L, Li P, Tang Z, Yan X, Feng B. Structural modulation of the gut microbiota and the relationship with body weight: compared evaluation of liraglutide and saxagliptin treatment. Sci Rep. 2016;6(1):33251. doi:10.1038/srep33251.
   PubMedGoogle Scholar
• Bischoff SC, Nguyen NK, Seethaler B, Beisner J, Kügler P, Stefan T. Gut microbiota patterns predicting long-term weight loss success in individuals with obesity undergoing nonsurgical therapy. Nutrients. 2022;14(15):14. doi:10.3390/nu14153182.
   Web of Science ®Google Scholar
• Gérard P. Metabolism of cholesterol and bile acids by the gut microbiota. Pathog Basel Switz. 2013;3(1):14–24. doi:10.3390/pathogens3010014.
   Google Scholar
• Morrison DJ, Preston T. Formation of short chain fatty acids by the gut microbiota and their impact on human metabolism. Gut Microbes. 2016;7(3):189–200. doi:10.1080/19490976.2015.1134082.
   PubMed Web of Science ®Google Scholar
• Ben-Shlomo Y, Brookes S, Hickman M. Lecture notes: epidemiology, evidence-based medicine and public health. 6th. Oxford: Wiley-Blackwell; 2013.
   Google Scholar
• Champely S, Ekstrom C, Dalgaard P, Gill J, Stephan Weibelzahl [ctb], Aditya Anandkumar [ctb], Clay Ford, Robert Volcic, Helios De Rosario. Package ‘pwr’ [Internet]. 2020. https://github.com/heliosdrm/pwr
   Google Scholar
• Franko DL, Cousineau TM, Trant M, Green TC, Rancourt D, Thompson D, Ainscough J, Mintz LB, Ciccazzo M. Motivation, self-efficacy, physical activity and nutrition in college students: randomized controlled trial of an internet-based education program. Prev Med. 2008;47(4):369–377. doi:10.1016/j.ypmed.2008.06.013.
   PubMed Web of Science ®Google Scholar
• Ortega RM, Pérez-Rodrigo C, López-Sobaler AM. Dietary assessment methods: dietary records. Nutr Hosp. 2015;31(Suppl 3):38–45. doi:10.3305/nh.2015.31.sup3.8749.
   PubMed Web of Science ®Google Scholar
• R Core Team. R: A language and environment for statistical computing. R 1056 foundation for statistical computing [Internet]. 2013. http://wwwR-project.org/.
   Google Scholar
• Bryer J. Likert: Analysis and Visualization Likert Items. [Internet]. https://CRAN.R-project.org/package=likert.
   Google Scholar
• Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, et al. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019;37(8):852–857. doi:10.1038/s41587-019-0209-9.
   PubMed Web of Science ®Google Scholar
• Quast C, Pruesse E, Yilmaz P, Gerken J, Schweer T, Yarza P, Peplies J, Glöckner FO. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research. 2013;41(D1):D590–6. doi:10.1093/nar/gks1219.
   PubMed Web of Science ®Google Scholar
• McMurdie PJ, Holmes S, Watson M. Phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS One. 2013;8(4):e61217. doi:10.1371/journal.pone.0061217.
   PubMed Web of Science ®Google Scholar
• Peschel S, Müller CL, von Mutius E, Boulesteix A-L, Depner M. NetCoMi: network construction and comparison for microbiome data in R. Brief Bioinform. 2021;22(4). doi:10.1093/bib/bbaa290.
   PubMed Web of Science ®Google Scholar