2,261
Views
0
CrossRef citations to date
0
Altmetric
Research Paper

DSS treatment does not affect murine colonic microbiota in absence of the host

, , , , , , , , , , , & ORCID Icon show all
Article: 2297831 | Received 23 May 2023, Accepted 18 Dec 2023, Published online: 02 Jan 2024

References

  • Kaplan GG. The global burden of IBD: from 2015 to 2025. Nat Rev Gastroenterol Hepatol. 2015;12(12):720–19. doi:10.1038/nrgastro.2015.150.
  • Kaplan GG, Windsor JW. The four epidemiological stages in the global evolution of inflammatory bowel disease. Nat Rev Gastroenterol Hepatol. 2021;18(1):56–66. doi:10.1038/s41575-020-00360-x.
  • Zhang YZ. Inflammatory bowel disease: pathogenesis. World J Gastroenterol. 2014;20(1):91. doi:10.3748/wjg.v20.i1.91.
  • Berg DJ, Davidson N, Kühn R, Müller W, Menon S, Holland G, Thompson-Snipes L, Leach MW, Rennick D. Enterocolitis and colon cancer in interleukin-10-deficient mice are associated with aberrant cytokine production and CD4(+) TH1-like responses. J Clin Invest. 1996;98(4):1010–1020. doi:10.1172/JCI118861.
  • Powrie F, Leach MW, Mauze S, Menon S, Barcomb Caddle L, Coffman RL. Inhibition of thl responses prevents inflammatory bowel disease in scid mice reconstituted with CD45RBhi CD4+ T cells. Immunity. 1994;1(7):553–562. doi:10.1016/1074-7613(94)90045-0.
  • Kiesler P, Fuss IJ, Strober W. Experimental models of inflammatory bowel diseases. Cell Mol Gastroenterol Hepatol. 2015;1(2):154–170. doi:10.1016/j.jcmgh.2015.01.006.
  • Okayasu I, Hatakeyama S, Yamada M, Ohkusa T, Inagaki Y, Nakaya R. A novel method in the induction of reliable experimental acute and chronic ulcerative colitis in mice. Gastroenterol. 1990;98(3):694–702. doi:10.1016/0016-5085(90)90290-H.
  • Chassaing B, Aitken JD, Malleshappa M, Vijay‐Kumar M. Dextran sulfate sodium (DSS)‐induced colitis in mice. Curr Protoc Immunol [Internet]. 2014 [accessd 2022 Feb 9];104(1). doi:10.1002/0471142735.im1525s104.
  • Eichele DD, Kharbanda KK. Dextran sodium sulfate colitis murine model: an indispensable tool for advancing our understanding of inflammatory bowel diseases pathogenesis. World J Gastroenterol. 2017;23(33):6016–6029. doi:10.3748/wjg.v23.i33.6016.
  • Kitajima S, Takuma S, Morimoto M. Histological analysis of murine colitis induced by dextran sulfate sodium of different molecular weights. Exp Anim. 2000;49(1):9–15. doi:10.1538/expanim.49.9.
  • Kwon J, Lee C, Heo S, Kim B, Hyun CK. DSS-induced colitis is associated with adipose tissue dysfunction and disrupted hepatic lipid metabolism leading to hepatosteatosis and dyslipidemia in mice. Sci Rep. 2021;11(1):5283. doi:10.1038/s41598-021-84761-1.
  • Poritz LS, Garver KI, Green C, Fitzpatrick L, Ruggiero F, Koltun WA. Loss of the tight junction protein ZO-1 in dextran sulfate sodium induced colitis. J Surg Res. 2007;140(1):12–19. doi:10.1016/j.jss.2006.07.050.
  • Håkansson Å, Tormo-Badia N, Baridi A, Xu J, Molin G, Hagslätt ML, Karlsson C, Jeppsson B, Cilio CM, Ahrné S. Immunological alteration and changes of gut microbiota after dextran sulfate sodium (DSS) administration in mice. Clin Exp Med. 2015;15(1):107–120. doi:10.1007/s10238-013-0270-5.
  • Dharmani P, Leung P, Chadee K, Cohen IR. Tumor necrosis factor-α and Muc2 mucin play major roles in disease onset and progression in dextran sodium sulphate-induced colitis. PLoS ONE. 2011;6(9):e25058. doi:10.1371/journal.pone.0025058.
  • Johansson MEV, Gustafsson JK, Sjöberg KE, Petersson J, Holm L, Sjövall H, Hansson GC, Ernberg IT. Bacteria penetrate the inner mucus layer before inflammation in the dextran sulfate colitis model. PLoS ONE. 2010;5(8):e12238. doi:10.1371/journal.pone.0012238.
  • Biton I, Stettner N, Brener O, Erez A, Harmelin A, Garbow J. Assessing mucosal inflammation in a DSS-Induced colitis mouse model by MR Colonography. Tomography. 2018;4(1):4–13. doi:10.18383/j.tom.2017.00021.
  • Melgar S, Karlsson A, Michaëlsson E. Acute colitis induced by dextran sulfate sodium progresses to chronicity in C57BL/6 but not in BALB/c mice: correlation between symptoms and inflammation. Am J Physiol-Gastrointest Liver Physiol. 2005;288(6):G1328–38. doi:10.1152/ajpgi.00467.2004.
  • Hernández-Chirlaque C, Aranda CJ, Ocón B, Capitán-Cañadas F, Ortega-González M, Carrero JJ, Suárez MD, Zarzuelo A, Sánchez de Medina F, Martínez-Augustin O. Germ-free and antibiotic-treated mice are highly susceptible to epithelial injury in DSS colitis. J Crohns Colitis. 2016;10(11):1324–1335. doi:10.1093/ecco-jcc/jjw096.
  • Consortium M, Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 2010;464(7285):59–65. doi:10.1038/nature08821.
  • David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, Ling AV, Devlin AS, Varma Y, Fischbach MA, et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature. 2014;505(7484):559–563. doi:10.1038/nature12820.
  • Li L, Ning Z, Zhang X, Mayne J, Cheng K, Stintzi A, Figeys D. RapidAIM: a culture- and metaproteomics-based rapid assay of individual microbiome responses to drugs. Microbiome. 2020;8(1):33. doi:10.1186/s40168-020-00806-z.
  • Krause JL, Engelmann B, Nunes da Rocha U, Pierzchalski A, Chang HD, Zenclussen AC, von Bergen M, Rolle-Kampczyk U, Herberth G. MAIT cell activation is reduced by direct and microbiota-mediated exposure to bisphenols. Environ Int. 2022;158:106985. doi:10.1016/j.envint.2021.106985.
  • Fernie AR, Aharoni A, Willmitzer L, Stitt M, Tohge T, Kopka J, Carroll AJ, Saito K, Fraser PD, DeLuca V. Recommendations for reporting metabolite data. Plant Cell. 2011;23(7):2477–2482. doi:10.1105/tpc.111.086272.
  • Collins SL, Patterson AD. The gut microbiome: an orchestrator of xenobiotic metabolism. Acta Pharm Sin B. 2020;10(1):19–32. doi:10.1016/j.apsb.2019.12.001.
  • Roy CC, Kien CL, Bouthillier L, Levy E. Short-chain fatty acids: ready for prime time? Nutr Clin Pract. 2006;21(4):351–366. doi:10.1177/0115426506021004351.
  • Araki Y, Bamba T, Mukaisho K-I, Kanauchi O, Ban H, Bamba S, Andoh A, Fujiyama Y, Hattori T, Sugihara H. Dextran sulfate sodium administered orally is depolymerized in the stomach and induces cell cycle arrest plus apoptosis in the colon in early mouse colitis. Oncol Rep. 2012;28(5):1597–1605. doi:10.3892/or.2012.1969.
  • Perše M, Cerar A. Dextran sodium sulphate colitis mouse model: traps and tricks. J Biomed Biotechnol. 2012;2012:1–13. doi:10.1155/2012/718617.
  • Chen T, Li S, Wei H. Antibiotic resistance capability of cultured human colonic microbiota growing in a chemostat model. Appl Biochem Biotechnol. 2014;173(3):765–774. doi:10.1007/s12010-014-0882-6.
  • Hao H, Zhou S, Cheng G, Dai M, Wang X, Liu Z, Wang Y, Yuan Z. Effect of tulathromycin on colonization resistance, antimicrobial resistance, and virulence of human gut microbiota in chemostats. Front Microbiol [Internet]. 2016 [accessed 2022 Feb 9];7. doi:10.3389/fmicb.2016.00477.
  • Moura IB, Buckley AM, Ewin D, Clark E, Mitra S, Wilcox MH, Chilton CH. Profiling the effects of rifaximin on the healthy human colonic microbiota using a chemostat model [internet]. Microbiology. 2019 [accessed 2022 Feb 9]. doi:10.1101/828269.
  • Krause JL, Haange SB, Schäpe SS, Engelmann B, Rolle-Kampczyk U, Fritz-Wallace K, Wang Z, Jehmlich N, Türkowsky D, Schubert K, et al. The glyphosate formulation Roundup® LB plus influences the global metabolome of pig gut microbiota in vitro. Sci Total Environ. 2020;745:140932. doi:10.1016/j.scitotenv.2020.140932.
  • Reygner J, Joly Condette C, Bruneau A, Delanaud S, Rhazi L, Depeint F, Abdennebi-Najar L, Bach V, Mayeur C, Khorsi-Cauet H. Changes in composition and function of human intestinal microbiota exposed to chlorpyrifos in oil as assessed by the SHIME® model. Int J Environ Res Public Health. 2016;13(11):1088. doi:10.3390/ijerph13111088.
  • Schäpe SS, Krause JL, Masanetz RK, Riesbeck S, Starke R, Rolle-Kampczyk U, Eberlein C, Heipieper HJ, Herberth G, von Bergen M, et al. Environmentally relevant concentration of bisphenol S shows slight effects on SIHUMIx. Microorgan. 2020;8(9):1436. doi:10.3390/microorganisms8091436.
  • Collins MD, Lawson PA, Willems A, Cordoba JJ, Fernandez-Garayzabal J, Garcia P, Cai J, Hippe H, Farrow JA. The phylogeny of the genus clostridium: proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol. 1994;44(4):812–826. doi:10.1099/00207713-44-4-812.
  • Correa-Betanzo J, Allen-Vercoe E, McDonald J, Schroeter K, Corredig M, Paliyath G. Stability and biological activity of wild blueberry (Vaccinium angustifolium) polyphenols during simulated in vitro gastrointestinal digestion. Food Chem. 2014;165:522–531. doi:10.1016/j.foodchem.2014.05.135.
  • Krause JL, Schaepe SS, Fritz-Wallace K, Engelmann B, Rolle-Kampczyk U, Kleinsteuber S, Schattenberg F, Liu Z, Mueller S, Jehmlich N, et al. Following the community development of SIHUMIx – a new intestinal in vitro model for bioreactor use. Gut Microbes. 2020;11(4):1116–1129. doi:10.1080/19490976.2019.1702431.
  • Schäpe SS, Krause JL, Engelmann B, Fritz-Wallace K, Schattenberg F, Liu Z, Müller S, Jehmlich N, Rolle-Kampczyk U, Herberth G, et al. The simplified human intestinal microbiota (SIHUMIx) shows high structural and functional resistance against changing transit times in in vitro bioreactors. Microorgan. 2019;7(12):641. doi:10.3390/microorganisms7120641.
  • Payne AN, Zihler A, Chassard C, Lacroix C. Advances and perspectives in in vitro human gut fermentation modeling. Trends Biotechnol. 2012;30(1):17–25. doi:10.1016/j.tibtech.2011.06.011.
  • Bachmanov AA, Reed DR, Beauchamp GK, Tordoff MG. Food intake, water intake, and drinking spout side preference of 28 mouse strains. Behav Genet. 2002;32(6):435–443. doi:10.1023/A:1020884312053.
  • Park H, Yeo S, Kang S, Huh CS. Longitudinal microbiome analysis in a dextran sulfate sodium-induced colitis mouse model. Microorganisms. 2021;9(2):370. doi:10.3390/microorganisms9020370.
  • Krych Ł, Kot W, Bendtsen KMB, Hansen AK, Vogensen FK, Nielsen DS. Have you tried spermine? A rapid and cost-effective method to eliminate dextran sodium sulfate inhibition of PCR and RT-PCR. J Microbiol Methods. 2018;144:1–7. doi:10.1016/j.mimet.2017.10.015.
  • Li M, Wu Y, Hu Y, Zhao L, Zhang C. Initial gut microbiota structure affects sensitivity to DSS-induced colitis in a mouse model. Sci China Life Sci. 2018;61(7):762–769. doi:10.1007/s11427-017-9097-0.
  • Shon WJ, Lee YK, Shin JH, Choi EY, Shin DM. Severity of DSS-induced colitis is reduced in Ido1-deficient mice with down-regulation of TLR-MyD88-NF-kB transcriptional networks. Sci Rep. 2015;5(1):17305. doi:10.1038/srep17305.
  • Haange SB, Jehmlich N, Hoffmann M, Weber K, Lehmann J, von Bergen M, Slanina U. Disease development is accompanied by changes in bacterial protein abundance and functions in a Refined Model of Dextran Sulfate Sodium (DSS)-induced colitis. J Proteome Res. 2019;18(4):1774–1786. doi:10.1021/acs.jproteome.8b00974.
  • Schwab C, Berry D, Rauch I, Rennisch I, Ramesmayer J, Hainzl E, Heider S, Decker T, Kenner L, Müller M, et al. Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery. ISME J. 2014;8(5):1101–1114. doi:10.1038/ismej.2013.223.
  • Van de Wiele T, Van den Abbeele P, Ossieur W, Possemiers S, Marzorati M. The simulator of the human intestinal microbial ecosystem (SHIME®) [internet]. In: Verhoeckx K, Cotter P, López-Expósito I, Kleiveland C, Lea T, Mackie A, Requena T, Swiatecka D Wichers H, editors. The impact of food bioactives on health: in vitro and ex vivo models. Cham: Springer International Publishing; 2015. pp. 305–317. doi:10.1007/978-3-319-16104-4_27.
  • McConnell EL, Basit AW, Murdan S. Measurements of rat and mouse gastrointestinal pH, fluid and lymphoid tissue, and implications for in-vivo experiments. J Pharm Pharmacol. 2010;60(1):63–70. doi:10.1211/jpp.60.1.0008.
  • Padmanabhan P, Grosse J, Asad ABMA, Radda GK, Golay X. Gastrointestinal transit measurements in mice with 99mTc-DTPA-labeled activated charcoal using NanoSPECT-CT. EJNMMI Res. 2013;3(1):60. doi:10.1186/2191-219X-3-60.
  • Org E, Mehrabian M, Parks BW, Shipkova P, Liu X, Drake TA, Lusis AJ. Sex differences and hormonal effects on gut microbiota composition in mice. Gut Microbes. 2016;7(4):313–322. doi:10.1080/19490976.2016.1203502.
  • McDonald JAK, Schroeter K, Fuentes S, Heikamp-DeJong I, Khursigara CM, de Vos WM, Allen-Vercoe E. Evaluation of microbial community reproducibility, stability and composition in a human distal gut chemostat model. J Microbiol Methods. 2013;95(2):167–174. doi:10.1016/j.mimet.2013.08.008.
  • Reitman ML. Of mice and men – environmental temperature, body temperature, and treatment of obesity. FEBS Lett. 2018;592(12):2098–2107. doi:10.1002/1873-3468.13070.
  • Yang N, Xia Z, Shao N, Li B, Xue L, Peng Y, Zhi F, Yang Y. Carnosic acid prevents dextran sulfate sodium-induced acute colitis associated with the regulation of the Keap1/Nrf2 pathway. Sci Rep. 2017;7(1):11036. doi:10.1038/s41598-017-11408-5.
  • Han J, Lin K, Sequeira C, Borchers CH. An isotope-labeled chemical derivatization method for the quantitation of short-chain fatty acids in human feces by liquid chromatography–tandem mass spectrometry. Anal Chim Acta. 2015;854:86–94. doi:10.1016/j.aca.2014.11.015.
  • Haange S-B, Jehmlich N, Krügel U, Hintschich C, Wehrmann D, Hankir M, Seyfried F, Froment J, Hübschmann T, Müller S, et al. Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss. Microbiome. 2020;8(1):13. doi:10.1186/s40168-020-0788-1.
  • Kanehisa M, Sato Y, Morishima K. BlastKOALA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences. J Mol Biol. 2016;428(4):726–731. doi:10.1016/j.jmb.2015.11.006.
  • Dixon P. VEGAN, a package of R functions for community ecology. J Veg Sci. 2003;14(6):927–930. doi:10.1111/j.1654-1103.2003.tb02228.x.
  • Ihaka R, Gentleman R. R: a language for data analysis and graphics. J Comput Graph Stat. 1996;5(3):299–314. doi:10.1080/10618600.1996.10474713.
  • Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B Methodol. 1995;57(1):289–300. doi:10.1111/j.2517-6161.1995.tb02031.x.
  • Kolde R. Pheatmap: pretty heatmaps. R Package Version 2017. 1.
  • Wickham H. ggplot2: elegant graphics for data analysis [internet]. New York: Springer-Verlag; 2016. https://ggplot2.tidyverse.org.