Evaluation of a multiplex gastrointestinal PCR panel for the aetiological diagnosis of infectious diarrhoea

References

• Dickinson B, Surawicz CM. Infectious diarrhea: an overview. Curr Gastroenterol Rep. 2014;16(8):399.
   PubMedGoogle Scholar
• Hodges K, Gill R. Infectious diarrhea: cellular and molecular mechanisms. Gut Microbes. 2010;1(1):4–21.
   PubMed Web of Science ®Google Scholar
• Hatchette TF, Farina D. Infectious diarrhea: when to test and when to treat. CMAJ. 2011;183(3):339–344.
   PubMed Web of Science ®Google Scholar
• Hamilton KW, Cifu AS. Diagnosis and management of infectious diarrhea. JAMA. 2019;321(9):891.
   PubMed Web of Science ®Google Scholar
• Pawlowski SW, Warren CA, Guerrant R. Diagnosis and treatment of acute or persistent diarrhea. Gastroenterology. 2009;136(6):1874–1886.
   PubMed Web of Science ®Google Scholar
• Koplan JP, Fineberg HV, Ferraro MJ, et al. Value of stool cultures. Lancet. 1980;2:413–416.
   PubMed Web of Science ®Google Scholar
• Mosli M, Gregor J, Chande N, et al. Nonutility of routine testing of stool for ova and parasites in a tertiary care Canadian centre. Can J Microbiol. 2012;58(5):653–659.
   PubMed Web of Science ®Google Scholar
• Haque R, Neville LM, Hahn P, et al. Rapid diagnosis of Entamoeba infection by using Entamoeba and Entamoeba histolytica stool antigen detection kits. J Clin Microbiol. 1995;33(10):2558–2561.
   PubMed Web of Science ®Google Scholar
• Kirby A, Gurgel RQ, Dove W, et al. An evaluation of the RIDASCREEN and IDEIA enzyme immunoassays and the RIDAQUICK immunochromatographic test for the detection of norovirus in faecal specimens. J Clin Virol. 2010;49:254–257.
   PubMed Web of Science ®Google Scholar
• Buss SN, Leber A, Chapin K, et al. Multicenter evaluation of the BioFire FilmArray gastrointestinal panel for etiologic diagnosis of infectious gastroenteritis. J Clin Microbiol. 2015;53(3):915–925.
   PubMed Web of Science ®Google Scholar
• Stockmann C, Rogatcheva M, Harrel B, et al. How well does physician selection of microbiologic tests identify Clostridium difficile and other pathogens in paediatric diarrhoea? Insights using multiplex PCR-based detection. Clin Microbiol Infect. 2015;21(2):179.e9–15.
   PubMed Web of Science ®Google Scholar
• Rand KH, Tremblay EE, Hoidal M, et al. Multiplex gastrointestinal pathogen panels: implications for infection control. Diagn Microbiol Infect Dis. 2015;82(2):154–157.
   PubMed Web of Science ®Google Scholar
• Spina A, Kerr KG, Cormican M, et al. Spectrum of enteropathogens detected by the FilmArray GI Panel in a multicentre study of community-acquired gastroenteritis. Clin Microbiol Infect. 2015;21(8):719–728.
   PubMed Web of Science ®Google Scholar
• Zhang H, Morrison S, Tang YW. Multiplex polymerase chain reaction tests for detection of pathogens associated with gastroenteritis. Clin Lab Med. 2015;35(2):461–486.
   PubMed Web of Science ®Google Scholar
• Stockmann C, Pavia AT, Graham B, et al. Detection of 23 gastrointestinal pathogens among children who present with diarrhea. J Pediatric Infect Dis Soc. 2017;6(3):231–238.
   PubMed Web of Science ®Google Scholar
• Huang RS, Johnson CL, Pritchard L, et al. Performance of the Verigene® enteric pathogens test, BiofireFilmArray™ gastrointestinal panel and LuminexxTAG® gastrointestinal pathogen panel for detection of common enteric pathogens. Diagn Microbiol Infect Dis. 2016;86(4):336–339.
   PubMed Web of Science ®Google Scholar
• Murphy CN, Fowler RC, Iwen PC, et al. Evaluation of the BioFireFilmArray® gastrointestinal panel in a Midwestern Academic Hospital. Eur J Clin Microbiol Infect Dis. 2017;36(4):747–754.
   PubMed Web of Science ®Google Scholar
• Ramanan P, Espy MJ, Khare R, et al. Detection and differentiation of norovirus genogroups I and II from clinical stool specimens using real-time PCR. Diagn Microbiol Infect Dis. 2017;87(4):325–327.
   PubMed Web of Science ®Google Scholar
• Piralla A, Lunghi G, Ardissino G, et al. FilmArray™ GI panel performance for the diagnosis of acute gastroenteritis or hemorrhagic diarrhea. BMC Microbiol. 2017;17(1):111.
   PubMedGoogle Scholar
• Freeman K, Mistry H, Tsertsvadze A, et al. Multiplex tests to identify gastrointestinal bacteria, viruses and parasites in people with suspected infectious gastroenteritis: a systematic review and economic analysis. Health Technol Assess. 2017;21(23):1–188.
   Web of Science ®Google Scholar
• Chhabra P, Gregoricus N, Weinberg GA, et al. Comparison of three multiplex gastrointestinal platforms for the detection of gastroenteritis viruses. J Clin Virol. 2017;95:66–71.
   PubMed Web of Science ®Google Scholar
• Beal SG, Tremblay EE, Toffel S, et al. A gastrointestinal PCR panel improves clinical management and lowers health care costs. J Clin Microbiol. 2017;56(1):e01457–17.
   PubMed Web of Science ®Google Scholar
• Hitchcock MM, Gomez CA, Banaei N. Low yield of FilmArray GI panel in hospitalized patients with diarrhea: an opportunity for diagnostic stewardship intervention. J Clin Microbiol. 2018;56.
   PubMed Web of Science ®Google Scholar
• Nobel YR, Axelrad J, Lewis SK, et al. Stool PCR for gastrointestinal pathogens in patients with and without immune-mediated intestinal diseases. Dig Dis Sci. 2018;63(4):996–1002.
   PubMed Web of Science ®Google Scholar
• Keske Ş, Zabun B, Aksoy K, et al. Rapid molecular detection of gastrointestinal pathogens and its role in antimicrobial stewardship. J Clin Microbiol. 2018;56(5).
   PubMed Web of Science ®Google Scholar
• Axelrad JE, Joelson A, Nobel Y, et al. The distribution of enteric infections utilizing stool microbial polymerase chain reaction testing in clinical practice. Dig Dis Sci. 2018;63(7):1900–1909.
   PubMed Web of Science ®Google Scholar
• Cybulski RJ Jr., Bateman AC, Bourassa L, et al. Clinical impact of a multiplex gastrointestinal polymerase chain reaction panel in patients with acute gastroenteritis. Clin Infect Dis. 2018;67(11):1688–1696.
   PubMed Web of Science ®Google Scholar
• Calderaro A, Martinelli M, Buttrini M, et al. Contribution of the FilmArray® gastrointestinal panel in the laboratory diagnosis of gastroenteritis in a cohort of children: a two-year prospective study. Int J Med Microbiol. 2018;308(5):514–521.
   PubMed Web of Science ®Google Scholar
• Gyawali P, Croucher D, Hewitt J. Preliminary evaluation of BioFire FilmArray® gastrointestinal panel for the detection of noroviruses and other enteric viruses from wastewater and shellfish. Environ Sci Pollut Res. 2018;25(27):27657–27661.
   PubMed Web of Science ®Google Scholar
• Wyatt A, Kellermayer R. PCR based fecal pathogen panel testing should be interpreted with caution at diagnosis of pediatric inflammatory bowel diseases. Ann Clin Lab Sci. 2018;48(5):674–676.
   PubMed Web of Science ®Google Scholar
• Valenzuela C, Legarraga P, Peña A, et al. Etiologic and clinical characterization of community acquired gastroenteritis in adult patients in a Chilean emergency room by the FilmArray GI panel. PLoS One. 2018;13(11):e0207850.
   PubMed Web of Science ®Google Scholar
• Axelrad JE, Freedberg DE, Whittier S, et al. Impact of gastrointestinal panel implementation on health care utilization and outcomes. J Clin Microbiol. 2019;57(3).
   PubMed Web of Science ®Google Scholar
• Yang S, Li M, Cheng J, et al. Diagnostic determination of Norovirus infection as one of the major causes of infectious diarrhea in HIV patients using a multiplex polymerase chain reaction assay. Int J STD AIDS. 2019;30(6):550–556.
   PubMed Web of Science ®Google Scholar
• World Health Organization (WHO). Diarrhoea; [cited 2019 Jun 21]. Available from: http://www.who.int/topics/diarrhoea/en/
   Google Scholar
• Hazra A, Gogtay N. Biostatistics series module 7: the statistics of diagnostic tests. Indian J Dermatol. 2017;62(1):18–24.
   PubMed Web of Science ®Google Scholar
• Vanniasinkam T, Lanser JA, Barton MD. PCR for the detection of Campylobacter spp. in clinical specimens. Lett Appl Microbiol. 1999;28(1):52–56.
   PubMed Web of Science ®Google Scholar
• de Boer RF, Ott A, Kesztyüs B, et al. Improved detection of five major gastrointestinal pathogens by use of a molecular screening approach. J Clin Microbiol. 2010;48(11):4140–4146.
   PubMed Web of Science ®Google Scholar
• Engberg J, On SL, Harrington CS, et al. Prevalence of Campylobacter, Arcobacter, Helicobacter, and Sutterella spp. in human fecal samples as estimated by a reevaluation of isolation methods for Campylobacters. J Clin Microbiol. 2000;38:286–291.
   PubMed Web of Science ®Google Scholar
• Robilotti E, Deresinski S, Pinsky BA. Norovirus. Clin Microbiol Rev. 2015;28(1):134–164.
   PubMed Web of Science ®Google Scholar
• Oude Munnink BB, van der Hoek L. Viruses causing gastroenteritis: the known, the new and those beyond. Viruses. 2016;8(2):42.
   Web of Science ®Google Scholar
• Cadwgan AM, Watson WA, Laing RB, et al. Presenting clinical features and C-reactive protein in the prediction of a positive stool culture in patients with diarrhoea. J Infect. 2000;41(2):159–161.
   PubMed Web of Science ®Google Scholar
• Marcus N, Mor M, Amir L, et al. The quick-read C-reactive protein test for the prediction of bacterial gastroenteritis in the pediatric emergency department. Pediatr Emerg Care. 2007;23(9):634–637.
   PubMed Web of Science ®Google Scholar