Population genetic structure of the short-beaked common dolphin from the Black Sea and the Turkish Straits System

References

• ACCOBAMS-MOP3 2007. Marine protected areas for cetaceans. ACCOBAMS-MOP3/2007/Res.3.22. Agreement on the Conservation of Cetaceans of the Black Sea, Mediterranean Sea and contiguous Atlantic Area, Monaco.
   Google Scholar
• Amaha A. 1994. Geographic variation of the common dolphin, Delphinus delphis (Odontoceti: Delphinidae) [dissertation]. Tokyo: Tokyo University of Fisheries.
   Google Scholar
• Amaral AR, Beheregaray LB, Bilgmann K, Freitas L, Robertson KM, Sequeira M, Stockin KA, Coelho MM, Möller LM. 2012. Influences of past climatic changes on historical population structure and demography of a cosmopolitan marine predator, the common dolphin (genus Delphinus). Mol Ecol. 21(19):4854–4871.
   PubMed Web of Science ®Google Scholar
• Bearzi G. 2003. Delphinus delphis (Mediterranean subpopulation). The IUCN Red List of Threatened Species 2003. e. T41762A10557372. http://dx.doi.org/10.2305/IUCN.UK.2003.RLTS.T41762A10557372.en.
   Google Scholar
• Bearzi G, Reeves RR, Notarbartolo Di Sciara G, Politi E, Cañadas A, Frantzis A, Mussi B. 2003. Ecology, status and conservation of short-beaked common dolphins Delphinus delphis in the Mediterranean Sea. Mammal Rev. 33(3-4):224–252.
   Web of Science ®Google Scholar
• Bearzi G, Agazzi S, Gonzalvo J, Costa M, Bonizzoni S, Politi E, Piroddi C, Reeves RR. 2008. Overfishing and the disappearance of short-beaked common dolphins from western Greece. Endang Species Res. 5:1–12.
   Google Scholar
• Birkun Jr AA. 2008. Delphinus delphis ssp. ponticus. The IUCN Red List of Threatened Species 2008. e.T133729A3875256. http://dx.doi.org/10.2305/IUCN.UK.2008.RLTS.T133729A3875256.en.
   Google Scholar
• Cañadas A, Hammond PS. 2008. Abundance and habitat preferences of the short‐beaked common dolphin Delphinus delphis in the southwestern Mediterranean: implications for conservation. Endang Species Res. 4:309–331.
   Google Scholar
• Cañadas A, Vázquez JA. 2017. Common dolphins in the Alboran Sea: facing a reduction in their suitable habitat due to an increase in sea surface temperature. Deep Sea Res II. 141:306–318.
   Web of Science ®Google Scholar
• Caretta JV, Forney KA, Muto MM, Barlow J, Baker J, Hanson B, Lowry MS. 2007. U.S. Pacific Marine Mammal Stock Assessments: 2006. NOAA Technical Memorandum NMFS -SWFSC-398, USA.
   Google Scholar
• Clement M, Snell Q, Walke P, Posada D, Crandall K. 2002. TCS: estimating gene genealogies. In: Werner B, editor. Proceedings of 16th International Parallel and Distributed Processing Symposium; Apr 15-19; Fort Lauderdale, USA: IEEE Computer Society. p. 184.
   Google Scholar
• Dede A, Öztürk AA, Akamatsu T, Tonay AM, Öztürk B. 2014. Long-term passive acoustic monitoring revealed seasonal and diel patterns of cetacean presence in the Istanbul Strait. J Mar Biol Ass. 94(6):1195–1202.
   Web of Science ®Google Scholar
• Durand JD, Blel H, Shen KN, Koutrakis ET, Guinand B. 2013. Population genetic structure of Mugil cephalus in the Mediterranean and Black Seas: a single mitochondrial clade and many nuclear barriers. Mar Ecol Prog Ser. 474:243–261.
   Web of Science ®Google Scholar
• Excoffier L, Lischer H. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour. 10(3):564–567.
   PubMed Web of Science ®Google Scholar
• Evans WE. 1982. Distribution and differentiation of stocks of Delphinus delphis Linnaeus in the northeastern Pacific. Mammals in the seas: small cetaceans, seals, sirenians, and otters. Volume 4. Rome: FAO; p. 45–66.
   Google Scholar
• Genov T, Bearzi G, Bonizzoni S, Tempesta M. 2012. Long-distance movement of a lone short-beaked common dolphin Delphinus delphis in the central Mediterranean Sea. Mar Biodivers Rec. 5:e9.
   Google Scholar
• Gjerde KM, Breide C. 2003. Towards a strategy for high seas marine protected areas. Proceedings of the IUCN, WCPA and WWF expert workshop on high seas marine protected areas; Jan 15-17; Malaga: International Union for Conservation of Nature.
   Google Scholar
• Hoyt E. 2011. Marine protected areas for whales, dolphins and porpoises: a world handbook for cetacean habitat conservation and planning. Earthscan, Washington: Whale and Dolphin Conservation Society (WDCS).
   Google Scholar
• Kalkan E, Karhan SÜ, Bilgin R, Hemond EM. 2016. The Turkish Straits System as a phylogeographic boundary - a literature review. In: Özsoy E, Çağatay MN, Balkıs Ne, Balkıs Nu, Öztürk B, editors. The sea of Marmara marine biodiversity, fisheries, conservation and governance. Istanbul: Turkish Marine Research Foundation Publication; p. 550–559.
   Google Scholar
• Kideys EA. 2002. Ecology. Fall and rise of the Black Sea ecosystem. Science. 297(5586):1482–1484.
   PubMed Web of Science ®Google Scholar
• Kleinenberg SE. 1956. Mammals of the Black Sea and the Sea of Azov. Results of Joint Biological-Commercial Whaling Studies, USSR Academy of Science. Fisheries and Marine Service Translation Series 4319, Canada.
   Google Scholar
• Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 25(11):1451–1452.
   PubMed Web of Science ®Google Scholar
• Mirimin L, Westgate A, Rogan E, Rosel P, Read A, Coughlan J, Cross T. 2009. Population structure of short-beaked common dolphins (Delphinus delphis) in the North Atlantic Ocean as revealed by mitochondrial and nuclear genetic markers. Mar Biol. 156(5):1087–1834.
   Web of Science ®Google Scholar
• Moura AE, Natoli A, Rogan E, Hoelzel AR. 2013. Atypical panmixia in a European dolphin species (Delphinus delphis): implications for the evolution of diversity across oceanic boundaries. J Evol Biol. 26(1):63–75.
   PubMed Web of Science ®Google Scholar
• Murphy S, Herman JS, Pierce GJ, Rogan E, Kitchener AC. 2006. Taxonomic status and geographical cranial variation of common dolphins (Delphinus) in the eastern north Atlantic. Marine Mammal Sci. 22(3):573–599.
   Web of Science ®Google Scholar
• Murphy S, Pinn E, Jepson PD. 2013. The short-beaked common dolphin (Delphinus delphis) in the north-east Atlantic: distribution, ecology, management and conservation status. In: Hughes RN, Hughes D, Smith P, editors. Oceanography and marine biology: an annual review. Vol 51. Florida: CRC Press; p. 193–280.
   Google Scholar
• Natoli A, Cañadas A, Peddemors VM, Aguilar A, Vaquero C, Fernández-Piqueras P, Hoelzel AR. 2006. Phylogeography and alpha taxonomy of the common dolphin (Delphinus sp.). J Evol Biol. 19(3):943–954.
   PubMed Web of Science ®Google Scholar
• Natoli A, Cañadas A, Vaquero C, Politi E, Fernandez-Navarro P, Hoelzel AR. 2008. Conservation genetics of the short-beaked common dolphin (Delphinus delphis) in the Mediterranean Sea and in the eastern North Atlantic Ocean. Conserv Genet. 9(6):1479–1487.
   Web of Science ®Google Scholar
• Neumann DR. 2001. Seasonal movements of short‐beaked common dolphins (Delphinus delphis) in the north‐western Bay of Plenty, New Zealand: influence of sea surface temperature and El Niño/La Niña. N Z J Mar Freshw Res. 35 (2):371–374.
   Web of Science ®Google Scholar
• Öztürk B. 1996. Whales and dolphins, introduction to cetology. Istanbul: Anahtar Publications (in Turkish).
   Google Scholar
• Öztürk B, Öztürk AA. 1996. On the biology of the Turkish Straits System. In: Briand F, editor. Dynamics of Mediterranean straits and channels. CIESM Science Series 2, Monaco: Bulletin de l’Institut Océanographique; , p. 205–211.
   Google Scholar
• Pace DS, Mussi B, Airoldi S, Alessi J, Arcangeli A, Atzori F, Azzolin M, Campana I, Celona A, Fiori C, et al. 2015. New insights on the presence and distribution of the endangered short‐beaked common dolphin Delphinus delphis in Italian waters. Biol Mar Mediterr. 22(1):262–263.
   Google Scholar
• Patarnello T, Volckaert F, Castilho R. 2007. Pillars of Hercules: is the Atlantic-Mediterranean transition a phylogeographical break? Mol Ecol. 16(21):4426–4444.
   PubMed Web of Science ®Google Scholar
• Perrin WF. 1984. Patterns of geographical variation in small cetaceans. Acta Zool Fenn. 172:137–140.
   Google Scholar
• Piroddi C, Bearzi G, Gonzalvo J, Christensen V. 2011. From common to rare: the case of the Mediterranean common dolphin. Biol Conserv. 144 (10):2490–2498.
   Web of Science ®Google Scholar
• PopArt 2012. Population analysis with reticulate trees, version 1.7.2. Dunedin, New Zealand. http://popart.otago.ac.nz.
   Google Scholar
• Rice W. 1989. Analyzing tables of statistical tests. Evolution. 43(1):223–225.
   PubMed Web of Science ®Google Scholar
• Rosel PE, Dizon AE, Heyning JE. 1994. Genetic analysis of sympatric morphotypes of common dolphins (genus Delphinus). Mar Biol. 119(2):159–167.
   Web of Science ®Google Scholar
• Sezgin M, Bat L, Ürkmez D, Arıcı E, Öztürk B. 2017. Black Sea marine environment: the Turkish Shelf. Publication No: 46, Istanbul: Turkish Marine Research Foundation (TUDAV).
   Google Scholar
• Temel O. 2017. Physical oceanography. In: Sezgin M, Bat L, Ürkmez D, Arıcı E, Öztürk B, editors. Black Sea marine environment: the Turkish Shelf. Publication No: 46: Istanbul Turkish Marine Research Foundation (TUDAV); p. 1–13.
   Google Scholar
• Tokarev Y, Shulman G. 2007. Biodiversity in the Black Sea: effects of climate and anthropogenic factors. Hydrobiologia. 580(1):23–33.
   Google Scholar
• Tonay AM, Öztürk AA. 2012. Historical records of cetacean fishery in the Turkish seas. J Black Sea/Mediterr Environ. 18 (3):388–399.
   Google Scholar
• Vella A, Vella J. 2016. Common dolphins (Delphinus delphis) in the central Mediterranean region: Longterm research from Malta. Report of the 1st international workshop conservation and research networking on short‐beaked common dolphin (Delphinus delphis) in the Mediterranean Sea. Italy: Mediterranean Common Dolphin Working Group; pp. 29–30.
   Google Scholar
• Viaud-Martínez KA, Martínez Vergara M, GolDin PE, Ridoux V, Öztürk AA, Öztürk B, Rosel PE, Frantzis A, Komnenou A, Bohonak AJ. 2007. Morphological and genetic differentiation of the Black Sea harbour porpoise Phocoena phocoena. Mar Ecol Prog Ser. 338:281–294.
   Web of Science ®Google Scholar
• Waring GT, Josephson E, Maze-Foley K, Rosel PE. 2016. US Atlantic and Gulf of Mexico Marine Mammal Stock Assessments - 2015, NOAA Technical Memorandum NMFS-NE-238, USA.
   Google Scholar
• [WDPA] World Database on Protected Areas. 2018. United Nations Environment World Conservation Monitoring Centre (UNEP-WCMC). https://protectedplanet.net/marine.
   Google Scholar
• Zagzebski KA, Gulland FMD, Haulena M, Lander ME, Greig DJ, Gage LJ, Hanson MB, Yochem PK, Stewart BS. 2006. Twenty-five years of rehabilitation of odontocetes stranded in central and northern California, 1977 to 2002. Aquatic Mammals. 32(3):334–345.
   Google Scholar
• Zaitsev Y. 2008. An introduction to the Black Sea ecology. Odessa: Smil Edition and Publishing Agency ltd.
   Google Scholar