Application of gene differential expression technology in the mechanism studies of nature product-derived drugs

Bibliography

• Jiang WY. Therapeutic wisdom in traditional Chinese medicine: a perspective from modern science. Trends Pharmacol Sci 2005;26:558-63
   PubMed Web of Science ®Google Scholar
• Wang M, Lamers RJ, Korthout HA, Metabolomics in the context of systems biology: bridging traditional Chinese medicine and molecular pharmacology. Phytother Res 2005;19:173-82
   PubMed Web of Science ®Google Scholar
• Li P, Yang LP, Gong YW. Application of systems biology technology in research of traditional Chinese medicine. J Tradit Chin Med 2009;29:153-7
   PubMed Web of Science ®Google Scholar
• Baranov VS. Genomics and molecular medicine. Mol Biol 2004;38:94-9
   Web of Science ®Google Scholar
• Zeng MX. The Comparison and analysis of gene expression difference technologies. J Math Med 2000;13:210-12
   Google Scholar
• Li Y, Chen Y, Tian J. The application of Gene differential expression technology on research on heart disease Foreign. Med Sci Pediatr 2004;31:59-62
   Google Scholar
• Jin ZW, Wang Z, Gao SH, Microarray and research of Chinese medications: pharmcogenomics of Chinese medications. Chin J Chin Mater Med 2007;32:289-92
   Google Scholar
• Drews J. Genomic sciences and the medicine of tomorrow. Drug Discov Today 2000;5:2
   PubMed Web of Science ®Google Scholar
• Roses AD. Genome-based pharmacogenetics and the pharmaceutical industry. Nat Rev Drug Discov 2002;1:541
   PubMed Web of Science ®Google Scholar
• Mandel S, Weinreb O, Youdim MB. Using cDNA microarray to assess Parkinsons' disease models and the effects of neuroprotective drugs. Trends Pharmacol Sci 2003;24:184
   PubMed Web of Science ®Google Scholar
• Yoon JH, Choi YJ, Cha SW, Anti-metastatic effects of ginsenoside Rd via inactivation of MAPK signaling and induction of focal adhesion formation. Phytomedicine 2012;19:284-92
   PubMed Web of Science ®Google Scholar
• Lennon GG. High-throughput gene expression analysis for drug discovery. Drug Discov Today 2000;5:59-66
   PubMed Web of Science ®Google Scholar
• Kim HL. Comparison of oligonucleotide-microarray and serial analysis of gene expression (SAGE) in transcript profiling analysis of megakaryocytes derived from CD34+ cells. Exp Mol Med 2003;35:460-6
   PubMed Web of Science ®Google Scholar
• Roda A, Pasini P, Mirasoli M, Biotechnological applications of bioluminescence and chemiluminescence. Trends Biotechnol 2004;22:295-303
   PubMed Web of Science ®Google Scholar
• Adomas A, Heller G, Olson A, Comparative analysis of transcript abundance in Pinus sylvestris after challenge with a saprotrophic, pathogenic or mutualistic fungus. Tree Physiol 2008;28:885-97
   PubMed Web of Science ®Google Scholar
• Kato M, Ishige A, Anjiki N, Effect of herbal medicine Juzentaihoto on hepatic and intestinal heat shock gene expression requires intestinal microflora in mouse. World J Gastroenterol 2007;49:267-75
   Google Scholar
• Zou MJ, Yang MX, Guo WJ, The application of gene chip on molecular mechanism of Chinese medicine. J Shandong Univ Health Sci 2005;43:653-6
   Google Scholar
• Medlin JF. Timely toxicology. Environ Health Perspect 1999;107:A256-8
   PubMed Web of Science ®Google Scholar
• Pennie WD, Tugwood JD, Oliver GJ, The principles and practice of toxicogenomics: applications and opportunities. Toxicol Sci 2000;54:277-83
   PubMed Web of Science ®Google Scholar
• Zhang TB. Gene chip and its significance in medical research. Acad J Second Mil Med Univ 2000;21:91-4
   Google Scholar
• Haddad F, Baldwin KM. Reverse transcription of the ribonucleic acid: the first step in RT-PCR assay. Methods Mol Bio 2010;630:261-70
   PubMedGoogle Scholar
• Nebenfuhr A, Lomax TL. Multiplex titration RT-PCR: rapid determination ofGene expression patterns for a large number of genes. Plant Mol Biol Rep 1998;16:323-39
   PubMed Web of Science ®Google Scholar
• Gao HB, Zhang SL, Chen YH. The application of semi-quantitative RT-PCR technology on gene expression. Livest Poult Ind 2008;226:34-6
   Google Scholar
• Zhang Q, Lei LS, Yang SQ, Effects of jujube date polysaccharide on tumor necrosis factor production and its mRNA expression in peritoneal macrophages in mice. J First Mil Med Univ 2001;21:592-4
   Google Scholar
• Hunt M. Real Time PCR Tutorial The Board of Trustees of the University of South Carolina. Available from: http://pathmicro.med.sc.edu/pcr/real%20time%20pcr%20tutorial.pdf [Citied 2006]
   Google Scholar
• Cristo AK, Mutis MS, Fernandes O, Evaluation of a real-time PCR assay based on the repetitive B1 gene for the detection of toxoplasma gondii in human peripheral blood. Parasitol Res 2007;101:619-25
   PubMed Web of Science ®Google Scholar
• Li QF, Sun SSM, Yuan DY, Validation of candidate reference genes for the accurate normalization of real-time quantitative RT-PCR data in rice during seed development. Plant Mol Biol Rep 2010;28:49-57
   Web of Science ®Google Scholar
• Abe A, Inoue K, Tanaka T, Quantitation of hepatitis B virus genomic DNA by real-time detection PCR. J Clin Microbiol l999;37:2899-903
   PubMed Web of Science ®Google Scholar
• Bustin SA. Absolute quantification of mRNA using realtime reverse transcription polymerase chain reaction assays. J Mol Endocrinol 2000;25:169-93
   PubMed Web of Science ®Google Scholar
• Zhang CY, Cheng J, Li QS, The development of fluorescence quantitive real time PCR. J Jiangsu Univ Med Edit 2006;16:268-71
   Google Scholar
• Kubista M, Andrade JM, Bengtsson M, The real-time polymerase chain reaction. Mol Aspects Med 2006;27:95-125
   PubMedGoogle Scholar
• Liu YM, Wu ZK, Chai LM, Effects of yisui shengxue granules on expressions of alpha-hemoglobin stabilizing protein and erythroid transcription factor GATA-1mRNAs in bone marrow of patients with beta-thalassemia. J Chin Intergr Med 2006;4:247-50
   PubMedGoogle Scholar
• Kevil CG, Walsh L, Laroux FS, An improved rapid northern protocol. Biochem Biophys Res Commun 1997;238:277-9
   PubMed Web of Science ®Google Scholar
• Alberts B, Johnson A, Lewis J, Molecular Biology of the Cell. 5th edition. Garland Science, Sage Publications Inc., 2455 Teller Rd, Thousand Oaks, USA, CA, 91320; 2008. p. 538-9
   Google Scholar
• Streit S, Michalski CW, Erkan M, Northern blot analysis for detection of RNA in pancreatic cancer cells and tissues. Nat Protoc 2009;4:37-43
   PubMed Web of Science ®Google Scholar
• Taniguchi M, Miura K, Iwao H, Quantitative assessment of DNA microarrays– comparison with northern blot analysis. Genomics 2001;71:34-9
   PubMed Web of Science ®Google Scholar
• Liu J, Liu HT, Liang YY, Effect of compound Chinese Drug Bailong on the expression of tumor suppressor genes and relationship with PKA Signal Pathway in human gastric carcinoma BGC82-3 cell line. Chin J Integr Tradit Med 1999;19:613-16
   Google Scholar
• Zhang X, Xie YM. A study of research ways on traditional Chinese medicine in post-genome era. Stud J Tradit Chin Med 2001;19:426-7
   Google Scholar
• Towbin H, Staehelin T, Gordon J. Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc Natl Acad Sci USA 1979;76:4350-4
   PubMed Web of Science ®Google Scholar
• Renart J, Reiser J, Stark GR. Transfer of proteins from gels to diazobenzyloxymethyl-paper and detection with antisera: a method for studying antibody specificity and antigen structure. Proc Natl Acad Sci USA 1979;76:3116-20
   PubMed Web of Science ®Google Scholar
• Hempelmann E, Schirmer RH, Fritsch G, Studies on glutathione reductase and methemoglobin from human erythrocytes parasitized with Plasmodium falciparum. Mol Biochem Parasitol 1987;23:19-24
   PubMed Web of Science ®Google Scholar
• Li JB, Li HY, Guo XJ, Mechanism of anticancer activities of the extracts of prescription 921. Chin J Inform Tradit Chin Med 2008;15:35-6
   Google Scholar
• Ramos-Vara JA. Technical aspects of immunohistochemistry. Vet Pathol 2005;42:405-26
   PubMed Web of Science ®Google Scholar
• Duerr JS. Immunohistochemistry. Wormbook; Ohio University, Athens, OH, 45701, USA 2006. p. 1-60
   Google Scholar
• Ruiz FS, Alessi AC, Chagas CA, Immunohistochemistry in diagnostic veterinary pathology: a critical review. J Bras Patol Med Lab 2005;41:263-70
   Google Scholar
• Wang ZK, Chen LP, Jiao SC. Experimental study on effect of shenqi decoction on matrix metalloproteinases-9 expression of pulmonary carcinoma mice. Chin J Health Care Med 2009;11:105-7
   Google Scholar
• Rosenqvist E, Kayhty H, Pollard AJ. Determination of antibody responses to meningococcal antigens by ELISA. Methods Mol Med 2001;66:255-73
   PubMedGoogle Scholar
• Hussain S. ELISA Technology - Why it is an Important Tool. Available from: http://ezinearticles.com/?expert=Shakeel_Hussain [Citied 10 February 2010]
   Google Scholar
• Zeng JL, He FY, Tang Y, Study of allergenicity of baicalin in shuanghuanglian injection. Chin J Exp Tradit Med Formulae 2012;18:102-6
   Google Scholar
• Xie PS, Leung AY. Understanding the traditional aspect of Chinese medicine in order to achieve meaningful quality control of Chinese materia medica. J Chromatogr A 2009;1216:1933-40
   PubMed Web of Science ®Google Scholar
• Eberwine J, Yeh H, Miyashiro K, Analysis of gene expression in single live neurons. Proc Natl Acad Sci USA 1992;89:3010-14
   PubMed Web of Science ®Google Scholar
• Sucher NJ, Deitcher DL. PCR and patch-clamp analysis of single neurons. Neuron 1995;14:1095-100
   PubMed Web of Science ®Google Scholar
• Yusuke N. From human genome project to genome medical science: from genome medical science to genome medicine-disease related gene research. Cell Technol 2005;24:1280-6
   Google Scholar
• Wang SQ, Chen L, Ni H, The effects of Chinese herbal compound H3C-1 on Gene expression of liver cancer cells. Pharm Biotechnol 2008;15:176-9
   Google Scholar
• Chen MW, Ni L, Zhao XG, The inhibition of 20(R)-ginsenoside Rg3 on the expressions of angiogenesis factors proteins in human lung adenocarcinoma cell line A549 and HUVEC304 cell. China J Chin Mater Med 2005;30:357-60
   Google Scholar
• Wang YJ, Shi Q, Li JS, Effects of Yiqi Study on the gene expression profile of cervical intervertebral disc requlated by Yiqi Huayu Fang in rats. Chin J Basic Med Tradit Chin Med 2003;9:32-7
   Google Scholar
• Jiang DY, Bai YB, Liu CG, Effects of Tang Xin Kang on Alox-12 mRNA gene expression in diabetes induced cardiomyopathy. World Sci Technol Mod Tradit Chin Med Mater Med 2008;10:23-6
   Google Scholar
• Li TJ, Qiu Y, Rui YC, DNA microarray analysis of protective mechanism of Buyang Huanwu decoction on focal cerebral ischemia/reperfusion in rats. China J Chin Mater Med 2004;29:559-63
   Google Scholar
• Chen Y, Xia QS, Cheng M, Application of genechip in toxicity mechanism of airpotato yam on liver of mice. J Mol Cell Bio 2006;39:568-71
   Google Scholar
• Xia QS, Zhang XM, Han FM, Gene expression profiling analysis of mouse liver injury caused by qianliguang. Chin Pharm J 2007;42:1529-33
   Google Scholar
• Li MC, Liang DS, Xu ZM, Effects of Ganoderma polysaccharides on IL-2 and IL-3 mRNA expression in murine T cells. Pharm J Chin People's Liberation Army 2001;17:125-7
   Google Scholar
• Cheng XH, Yu R, Wu YJ, Research on PPARgamma expression in transgenic type 2 diabetic MKR mice treated by Zuogui Recipe. Tradit Chin Drug Res Clin Pharm 2009;20:111-15
   Google Scholar
• Zhang Q, Wu H, Jiang Y, Effects of guizhi shaoyao zhimu decoction on CRP and IL-2 level in collagen-induced arthritis of transgenic mice. J Tradit Chin Med 2005;46:854-6
   Google Scholar
• He W, Han H, Wang W, Anti-influenza virus effect of aqueous extracts. Virol J 2011;8:538
   PubMedGoogle Scholar
• Wang E, Bussom S, Chen J, Interaction of a traditional Chinese Medicine (PHY906) and CPT-11 on the inflammatory process in the tumor microenvironment. BMC Med Genomic 2011;4:38
   PubMed Web of Science ®Google Scholar
• Zhao XZ, Xu ZY, Wu ZH. Regulatory effects of feiyanning decoction on epithelial-mesenchymal transition factors Twist, Snail, Sip 1 and E-cadher. Tumor 2008;28:29-31
   Google Scholar
• Liao BS, Hu Y, Ju G, Research of the effects of erxiantang decoction to the hypothalamus EOP and EOP mRNA level of 18-month female rats. J Shandong Univ Tradit Chin Med 1996;20:399-401
   Google Scholar
• Li BY, Liang YY, Wang DS. Study on common character of regulative molecular mechanism of Chinese drug Bailong and hexamethylen bisacetamide in human cancer cell cycle and their oncogene and tumor suppressor gene expression. Chin J Integr Tradit Med 2001;21:286-9
   PubMedGoogle Scholar
• He YJ, Su AY, Chai XQ, A study on antineoplastic effect and its mechanism of the herbal medicinal mixture. Chin Gen Pract 1998;1:273
   Google Scholar
• Yan JL, Li H, Fan Y, Effect of cordycep polysaccharide on expression of tumor necrosis factor-alpha and activity of nuclear factor-kappaB of hepatic stellate cells in rat. Fudan Univ J Med Sci 2003;30:27-9
   Google Scholar
• Ma X, Qiu DK, Xu J, Effect of cordyceps polysaccharide-liposome on transforming growth factor-beta1 in the experimental liver fibrotic rats. Chin J Gastroenterol 1999;4:205-6
   Google Scholar
• Wang B, Wang ZR, Li JC, Effects of qidantongmai tablet on the GLUT1 in the rat model of myocardial ischemia reperfusion injur. J Anhui Tradit Chin Med Coll 2007;26:29-32
   Google Scholar
• Zhang N, Li YL, Liu SY, Study on anti-aging in the ovary of the aging model rat by traditional chinese medicine heshouwuyin. Acta Anat Sin 2008;39:187-92
   Google Scholar
• Hu B, An HM, Shen KP, Senescence-inducing effects of Chinese herbal medicine tenglong buzhong decoction on human colon carcinoma LS-174-T cells and the mechanism. J Chin Integr Med 2010;8:1048-52
   PubMedGoogle Scholar
• Ren YX, Peng C, Yao G. The study on effects of Toufengyin on gene c-fos and c-jun of experimental migraine headache model. J Chengdu Univ TCM 2000;23(3):34-6
   Google Scholar
• Chang TH, Liu XY, Zhang XH, Effects of peucedanuml praeruptorum dunn and dl-Praeruptorin A on IL-6 level and Fas, bax, bcl protein expressions in Ischemia-Reperfusion myocardium of rats. J Chin Med Univ 2003;32:1-6
   Google Scholar
• Zhang MM, Dong LP, Cheng LL. Influence of bushen antai recipe on the expression of endometrial COX-2 in mice with embryonic implantation dysfunction. J Shandong Univ TCM 2008;32:58-61
   Google Scholar
• Huang DM, Huang GY, Xu LJ, Zhang MM. Effect of Bushen YiqiHexue recipe on endometrial P21 expression of embryo implantation dysfunctional mice. China J Chin Mater Med 2007;32:2152-5
   Google Scholar
• Shao Y, Chen C, Liu H, The effects of dihuang drink on the level of antibody in mice. Prog Mod Biomed 2011;11:465-7
   Google Scholar
• Li XR. The research on Danzhixiaoyaosan for the treatment of recurrent oral ulcer. Chin J Coal Ind Med 2011;14:101-2
   Google Scholar
• Schena M, Heller RA, Theriault TP, Microarrays: biotechnology's discovery platform for functional genomics. Trends Biotechnol 1998;16:301-6
   PubMed Web of Science ®Google Scholar
• Chen ZX, Liu QZ, McGee M, A gene selection method for GeneChip array data with small sample sizes. BMC Genomics 2011;12(Suppl 5):S7
   PubMedGoogle Scholar
• Huang J, Li CY. Application of gene array technique in dotage mechanism and anti-dotage traditional Chinese medicine study. Mod J Integr Tradit Chin West Med 2007;16:2009-13
   Google Scholar
• Baldwin D, Crane V, Rice D. A comparison of gel-based, nylon filter and microarray techniques to detect differential RNA expression in plants. Curr Opin Plant Biol 1999;2:96-103
   PubMed Web of Science ®Google Scholar
• Taniguchi M, Miura K, Iwao H, Quantitative assessment of DNA microarrays – comparison with Northern Blot. Anal Genomics 2001;71:34-9
   PubMed Web of Science ®Google Scholar