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Review

Prediction of cis-regulatory elements for drug-activated transcription factors in the regulation of drug-metabolising enzymes and drug transporters

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Pages 367-379 | Published online: 30 May 2006

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Websites

  • http://www.genomesonline.org GOLD Genomes OnLine database (2005).
  • http://www.genome.gov/10001356 Remarks made by the President, Prime Minister Tony Blair of England (via satellite), Dr Francis Collins, Director of the National Human Genome Research Institute, and Dr Craig Venter, President and Chief Scientific Officer, Celera Genomics Corporation, on the Completion of the first survey of the entire Human Genome Project (2000).
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  • http://genome.ucsc.edu/ Genome browser (2005).
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  • http://www.isrec.isb-sib.ch/ftp-server/pftools/ Download of the pftools package (2005).
  • http://hmmer.wustl.edu/ HMMER: sequence analysis using profile hidden Markov models (2005).
  • http://www.gene-regulation.com/ Gene Regulation portal site (2005).
  • http://srs.ebi.ac.uk/ SRS Release 7.1.3.1 (2005).
  • http://jaspar.cgb.ki.se/ The JASPAR database (2004).
  • http://wwwmgs.bionet.nsc.ru/mgs/gnw/trrd/ TRRD Transcription Regulatory Regions Database (2005).
  • http://meme.sdsc.edu/ MEME website (2005).
  • http://bayesweb.wadsworth.org/gibbs/ gibbs.html The Gibbs Motif Sampler homepage (2005).
  • http://seqmotifs.stanford.edu A suite of web-based programs to search for regulatory motifs in prokaryotes and eukaryotes (2004).
  • http://cbcsrv.watson.ibm.com/Tspd.html TEIRESIAS: Sequence Pattern Discovery (2005).
  • http://source.stanford.edu SOURCE search (2005).
  • http://genome-www6.stanford.edu/cgi-bin/ Traser/traser TRASER Transcript Sequence Retrieval (2005).
  • http://r.faculty.umkc.edu/roganp/Information/delgen.html Delila-Genome webpage (2005).
  • http://mordor.cgb.ki.se/cgi-bin/NHR-scan/ nhr_scan.cgi NHR-Scan (2005).
  • http://www.esat.kuleuven.ac.be/saerts/ software/toucan.php TOUCAN regulatory sequence analysis (2005).
  • http://www.dcode.org/ Comparative Genomics Center at Lawrence Livermore National Laboratory (2005).
  • http://gaspard.bio.nyu.edu/Ahab.html Ahab (2003).
  • http://mscan.cgb.ki.se/cgi-bin/MSCAN
  • http://zlab.bu.edu/cluster-buster/
  • http://pipmaker.bx.psu.edu/cgi-bin/ pipmaker PipMaker and MultiPipMaker (2005).
  • http://mordor.cgb.ki.se/cgi-bin/CONSITE/ consite/ CONSITE (2005).
  • http://www.phylofoot.org/ Tools for phylogenetic footprinting (2005).
  • http://perldoc.perl.org/perlretut.html perlretut Perl regular expressions tutorial (2000).

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