35
Views
0
CrossRef citations to date
0
Altmetric
Perspectives

Computer-assisted reading in drug discovery

Pages 299-304 | Published online: 20 Mar 2007

Bibliography Papers of special note have been highlighted of interest (•) to readers,

  • HUNTER L, COHEN KB: Biomedical language processing: what’s beyond PubMed? Mol Cell. (2006) 21:589-594.
  • JENSEN LJ, SARIC J, BORK P: Literature mining for the biologist: from information retrieval to biological discovery. Nat. Genetics (2006) 7:119-129.
  • CHO CR, LABOW M, REINHARDT M, VAN OOSTRUM J, PEITSCH MC: The application of systems biology to drug discovery. Curr. Opin. Chem. Biol. (2006) 10:294-302.
  • GRANDJEAN N, CHARPIOT B, PENA CA, PEITSCH MC: Competitive intelligence and patent analysis in drug discovery. Mining the competitive knowledge bases and patents. Drug Discov. Today: Technologies (2005) 3:211-215.
  • COOPER JW, KERSHENBAUM A: Discovery of protein–protein interactions using a combination of linguistic, statistical and graphical information. BMC Bioinformatics (2005) 6:143.
  • TEMKIN JM, GILDER MR: Extraction of protein interaction information from unstructured text using a context-free grammar. Bioinformatics (2003) 19:2046-2053.
  • DARASELIA N, YURYEV A, EGOROV S, NOVICHKOVA S, NIKITIN A, MAZO I: Extracting human protein interactions from Medline using a full-sentence parser. Bioinformatics (2004) 20:604-611.
  • NARAYANASWAMY M, RAVIKUMAR KE, VIJAY-SHANKER K: Beyond the clause: extraction of phosphorylation information from Medline abstracts. Bioinformatics (2005) 21:319–i327.
  • SAFRAN M, SOLOMON I, SHMUELI O et al.: GeneCards 2002: towards a complete, object-oriented, human gene compendium. Bioinformatics (2002) 18:1542-1543.
  • O’DONNELL JJ: Avatars of the Word: from papyrus to cyberspace. Harvard University Press Cambridge (1997).
  • WHEELER DL, BARRETT T, BENSON DA et al.: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. (2006) 34:D173-180.
  • HANISCH D, FUNDEL K, MEVISSEN HT, ZIMMER R, FLUCK J: ProMiner: rule-based protein and gene entity recognition. BMC Bioinformatics (2005) 6(1 Suppl. S14):1-9.
  • COHEN AM, HERSH WR, DUBAY C, SPACKMAN K: Using co-occurrence network structure to extract synonymous gene and protein names from Medline abstracts. BMC Bioinformatics (2005) 6(103):1-15.
  • CHEN L, LIU H, FRIEDMAN C: Gene name ambiguity of eukaryotic nomenclatures. Bioinformatics (2005) 21:248-256.
  • GAUDAN S, KIRSCH H, REBHOLZ-SCHUHMANN D: Resolving abbreviations to their senses in Medline. Bioinformatics (2005) 21:3658-3664.
  • SCHIJVENAARS BJA, MONS B, WEEBER M et al.: Thesaurus-based disambiguation of gene symbols. BMC Bioinformatics (2005) 6:149.
  • DELLAVALLE RP, HESTER EJ, HEILIG LF et al.: Going, going, gone: lost internet references. Science (2003) 302:787-788.
  • ROMACKER M, GRANDJEAN N, PARISOT P et al.: The ultralink: an expert system for contextual hyperlinking in knowledge management. In: computer applications in Pharm. Res. and Development. Ekins S (Ed.), Wiley & Sons, New York; (2006):729-753.
  • HOFFMANN R, VALENCIA A: Implementing the iHOP concept for navigation of biomedical literature. Bioinformatics (2005) S2:ii252-ii258.
  • GOOD BM, KAWAS EA, KUO BY, WILKINSON MD: iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website. BMC Bioinformatics (2006) 7:534.
  • NATARAJAN J, MULAY N, DESESA C, HACK CJ, DUBITZKY W, BREMER EG: A grid infrastructure for text mining of full text articles and creation of a knowledge base of gene relations. Lecture notes in bioinformatics (2005) 3745:101-108.
  • NATARAJAN J, HAINES C, BERGLUND B et al.: GetItFull – A tool for downloading and preprocessing full-text journal articles. Lecture notes in computer science (2006) 3869:139-145.

Websites

  • http://www.nature.com Nature website (2007).
  • http://www.sciencemag.org/cgi/eletters/302/5646/7871608. JEKER LT, WINKLER DT, OTTEN LA, ANDEL DM: Scientist identification number science E-letter (2005).

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.