References
- Parkin M, Samet J, Tyczynski et al. Chapter 1. Lung cancer epidemiology and etiology. In: Pathology & Genetics of Tumours of the Lung, Pleura, Thymus and Heart. Travis WD, Brambilla E, Müller-Hermelink HK, Harris CC (Eds). IARC Press, Lyon, France 12–15 (2004).
- Parkin DM, Bray F, Ferlay J, Pisani P. Global cancer statistics 2002. CA Cancer J. Clin.55(2), 74–108 (2005).
- Furak J, Trojan I, Szoke T et al. Bronchioloalveolar lung cancer: occurrence, surgical treatment and survival. Eur. J. Cardiothorac. Surg.23(5), 818–823 (2003).
- Bertucci F, Houlgatte R, Nguyen C et al. Gene expression profiling of cancer by use of DNA arrays: how far from the clinic? Lancet Oncol.2(11), 674–682 (2001).
- Macgregor PF. Gene expression in cancer: the application of microarrays. Expert Rev. Mol. Diagn.3(2), 185–200 (2003).
- Quackenbush J. Microarray analysis and tumor classification. N. Engl. J. Med.354(23), 2463–2472 (2006).
- Raetz EA, Moos PJ. Impact of microarray technology in clinical oncology. Cancer Invest.22(2), 312–320 (2004).
- Hecht SS. Tobacco carcinogens, their biomarkers and tobacco-induced cancer. Nat. Rev.3(10), 733–744 (2003).
- Hecht SS. Cigarette smoking and lung cancer: chemical mechanisms and approaches to prevention. Lancet Oncol.3(8), 461–469 (2002).
- Stellman SD, Muscat JE, Thompson S, Hoffmann D, Wynder EL. Risk of squamous cell carcinoma and adenocarcinoma of the lung in relation to lifetime filter cigarette smoking. Cancer80(3), 382–388 (1997).
- Mao L. Recent advances in the molecular diagnosis of lung cancer. Oncogene21(45), 6960–6969 (2002).
- Zochbauer-Muller S, Gazdar AF, Minna JD. Molecular pathogenesis of lung cancer. Annu. Rev. Physiol.64, 681–708 (2002).
- Brambilla E, Gazzeri S, Moro D et al. Alterations of Rb pathway (Rb-p16INK4-cyclin D1) in preinvasive bronchial lesions. Clin. Cancer Res.5(2), 243–250 (1999).
- Sozzi G, Pastorino U, Moiraghi L et al. Loss of FHIT function in lung cancer and preinvasive bronchial lesions. Cancer Res.58(22), 5032–5037 (1998).
- Virmani AK, Fong KM, Kodagoda D et al. Allelotyping demonstrates common and distinct patterns of chromosomal loss in human lung cancer types. Genes Chromosomes Cancer21(4), 308–319 (1998).
- Westra WH, Baas IO, Hruban RH et al. K-ras oncogene activation in atypical alveolar hyperplasias of the human lung. Cancer Res.56(9), 2224–2228 (1996).
- Wistuba, II, Mao L, Gazdar AF. Smoking molecular damage in bronchial epithelium. Oncogene21(48), 7298–7306 (2002).
- Wistuba II, Gazdar AF. Lung cancer preneoplasia. Annu. Rev. Path. Mech. Dis.1, 331–348 (2006).
- Yashima K, Litzky LA, Kaiser L et al. Telomerase expression in respiratory epithelium during the multistage pathogenesis of lung carcinomas. Cancer Res.57(12), 2373–2377 (1997).
- Brundage MD, Davies D, Mackillop WJ. Prognostic factors in non-small cell lung cancer: a decade of progress. Chest122(3), 1037–1057 (2002).
- Naruke T, Goya T, Tsuchiya R,Suemasu K. Prognosis and survival in resected lung carcinoma based on thenew international staging system. J. Thorac. Cardiovasc. Surg.96(3), 440–447 (1988).
- Pairolero PC, Williams DE, Bergstralh EJ et al. Postsurgical stage I bronchogenic carcinoma: morbid implications of recurrent disease. Ann. Thorac. Surg.38(4), 331–338 (1984).
- Williams DE, Pairolero PC, Davis CS et al. Survival of patients surgically treated for stage I lung cancer. J. Thorac.Cardiovasc. Surg.82(1), 70–76 (1981).
- Horio Y, Takahashi T, Kuroishi T et al. Prognostic significance of p53 mutations and 3p deletions in primary resected non-small cell lung cancer. Cancer Res.53(1), 1–4 (1993).
- Slebos RJ, Kibbelaar RE, Dalesio O et al. K-ras oncogene activation as a prognostic marker in adenocarcinoma of the lung. N. Engl. J. Med.323(9), 561–565 (1990).
- Bustin SA, Nolan T. Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction. J. Biomol. Tech.15(3), 155–166 (2004).
- Blackhall FH, Pintilie M, Wigle DA et al. Stability and heterogeneity of expression profiles in lung cancer specimens harvested following surgical resection. Neoplasia6(6), 761–767 (2004).
- Brazma A, Hingamp P, Quackenbush J et al. Minimum information about a microarray experiment (MIAME) – toward standards for microarray data. Nat. Genet.29(4), 365–371 (2001).
- Dobbin KK, Beer DG, Meyerson M et al. Interlaboratory comparability study of cancer gene expression analysis using oligonucleotide microarrays. Clin. Cancer Res.11(2 Pt 1), 565–572 (2005).
- Shi L, Reid LH, Jones WD et al.The microarray quality control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat. Biotechnol.24(9), 1151–1161 (2006).
- Allison DB, Cui X, Page GP, Sabripour M. Microarray data analysis: from disarray to consolidation and consensus. Nat. Rev. Genet.7(1), 55–65 (2006).
- Auer H, Lyianarachchi S, Newsom D et al. Chipping away at the chip bias: RNA degradation in microarray analysis. Nat. Genet.35(4), 292–293 (2003).
- Michiels S, Koscielny S, Hill C. Interpretation of microarray data in cancer. Br. J. Cancer96(8), 1155–1158 (2007).
- Eisen MB, Spellman PT, Brown PO, Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA95(25), 14863–14868 (1998).
- Tavazoie S, Hughes JD, Campbell MJ, Cho RJ, Church GM. Systematic determination of genetic network architecture. Nat. Genet.2s2(3), 281–285 (1999).
- Michiels S, Koscielny S, Hill C. Prediction of cancer outcome with microarrays: a multiple random validation strategy. Lancet365(9458), 488–492 (2005).
- Beer DG, Kardia SL, Huang CC et al. Gene-expression profiles predict survival of patients with lung adenocarcinoma. Nat. Med.8(8), 816–824 (2002).
- Bhattacharjee A, Richards WG, Staunton J et al. Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses. Proc. Natl Acad. Sci. USA98(24), 13790–13795 (2001).
- Garber ME, Troyanskaya OG, Schluens Ket al. Diversity of gene expression in adenocarcinoma of the lung. Proc. Natl Acad. Sci. USA98(24), 13784–13789 (2001).
- Hayes DN, Monti S, Parmigiani G et al. Gene expression profiling reveals reproducible human lung adenocarcinoma subtypes in multiple independent patient cohorts. J. Clin. Oncol.24(31), 5079–5090 (2006).
- Jiang H, Deng Y, Chen HS et al. Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes. BMC Bioinformatics5, 81 (2004).
- Lu Y, Lemon W, Liu PY et al. A gene expression signature predicts survival of patients with stage I non-small cell lung cancer. PLoS Med.3(12), E467 (2006).
- Parmigiani G, Garrett-Mayer ES, Anbazhagan R, Gabrielson E. A cross-study comparison of gene expression studies for the molecular classification of lung cancer. Clin. Cancer Res.10(9), 2922–2927 (2004).
- Barrett T, Troup DB, Wilhite SE et al. NCBI GEO: mining tens of millions of expression profiles – database and tools update. Nucleic Acids Res.35(Database issue), D760–D765 (2007).
- Edgar R, Domrachev M, Lash AE.Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res.30(1), 207–210 (2002).
- Rhodes DR, Yu J, Shanker K et al. ONCOMINE: a cancer microarray database and integrated data-mining platform. Neoplasia6(1), 1–6 (2004).
- Wigle DA, Tsao M, Jurisica I. Making sense of lung-cancer gene-expression profiles. Genome Biol.5(2), 309 (2004).
- Raponi M, Zhang Y, Yu J et al. Gene expression signatures for predicting prognosis of squamous cell and adenocarcinomas of the lung. Cancer Res.66(15), 7466–7472 (2006).
- Takeuchi T, Tomida S, Yatabe Y et al. Expression profile-defined classificationof lung adenocarcinoma shows close relationship with underlying majorgenetic changes and clinicopathologic behaviors. J. Clin. Oncol.24(11), 1679–1688 (2006).
- Hofmann HS, Bartling B, Simm A et al. Identification and classification of differentially expressed genes in non-small cell lung cancer by expression profiling on a global human 59.620-element oligonucleotide array. Oncol. Rep.16(3), 587–595 (2006).
- Virtanen C, Ishikawa Y, Honjoh D et al. Integrated classification of lung tumors and cell lines by expression profiling. Proc. Natl Acad. Sci. USA99(19), 12357–12362 (2002).
- Ramaswamy S, Ross KN, Lander ES, Golub TR. A molecular signature of metastasis in primary solid tumors. Nat. Genet.33(1), 49–54 (2003).
- Wigle DA, Jurisica I, Radulovich N et al. Molecular profiling of non-small cell lung cancer and correlation with disease-free survival. Cancer Res.62(11), 3005–3008 (2002).
- Bild AH, Yao G, Chang JT et al. Oncogenic pathway signatures in human cancers as a guide to targeted therapies. Nature439(7074), 353–357 (2006).
- Chen HY, Yu SL, Chen CH et al. A five-gene signature and clinical outcome in non-small-cell lung cancer. N. Engl. J. Med.356(1), 11–20 (2007).
- Potti A, Mukherjee S, Petersen R et al. A genomic strategy to refine prognosis in early-stage non-small-cell lung cancer. N. Engl. J. Med.355(6), 570–580 (2006).
- Bianchi F, Nuciforo P, Vecchi M et al. Survival prediction of stage I lung adenocarcinomas by expression of 10 genes. J. Clin. Invest.117(11), 3436–3444 (2007).
- Rosell R, Danenberg KD, Alberola V et al. Ribonucleotide reductase messenger RNA expression and survival in gemcitabine/cisplatin-treated advanced non-small cell lung cancer patients. Clin. Cancer Res.10(4), 1318–1325 (2004).
- Larsen JE, Pavey SJ, Passmore LH et al. Expression profiling defines a recurrence signature in lung squamous cell carcinoma. Carcinogenesis28(3), 760–766 (2007).
- Larsen JE, Pavey SJ, Passmore LH et al. Gene expression signature predicts recurrence in lung adenocarcinoma. Clin. Cancer Res.13(10), 2946–2954 (2007).
- Sun Z, Yang P, Aubry MC et al. Can gene expression profiling predict survival for patients with squamous cell carcinoma of the lung? Mol. Cancer3(1), 35 (2004).
- Inamura K, Shimoji T, Ninomiya H et al. A metastatic signature in entire lung adenocarcinomas irrespective of morphological heterogeneity. Hum. Pathol.38(5), 702–709 (2007).
- Talbot SG, Estilo C, Maghami E et al. Gene expression profiling allows distinction between primary and metastatic squamous cell carcinomas in the lung. Cancer Res.65(8), 3063–3071 (2005).
- Blackhall FH, Wigle DA, Jurisica I et al. Validating the prognostic value of marker genes derived from a non-small cell lung cancer microarray study. Lung Cancer46(2), 197–204 (2004).
- Sun Z, Yang P. Gene expression profiling on lung cancer outcome prediction: present clinical value and future premise. Cancer Epidemiol. Biomarkers Prev.15(11), 2063–2068 (2006).
- Powell CA, Spira A, Derti A et al.Gene expression in lung adenocarcinomas of smokers and nonsmokers. Am. J. Resp. Cell Mol. Biol.29(2), 157–162 (2003).
- Spira A, Beane JE, Shah V et al. Airway epithelial gene expression in the diagnostic evaluation of smokers with suspect lung cancer. Nat. Med.13(3), 361–366 (2007).
- Wachi S, Yoneda K, Wu R. Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues. Bioinformatics21(23), 4205–4208 (2005).
- Yamagata N, Shyr Y, Yanagisawa K et al. A training-testing approach to the molecular classification of resected non-small cell lung cancer. Clin. Cancer Res.9(13), 4695–4704 (2003).
- Stearman RS, Dwyer-Nield L, Zerbe L et al. Analysis of orthologous gene expression between human pulmonary adenocarcinoma and a carcinogen-induced murine model. Am. J. Pathol.167(6), 1763–1775 (2005).
Website
- Oncomine database www.oncomine.org