Proteomic analysis of adipose tissue: informing diabetes research

References

• Whiting DR, Guariguata L, Weil C, Shaw J. IDF diabetes atlas: global estimates of the prevalence of diabetes for 2011 and 2030. Diabetes Res Clin Pract 2011;94(3):311-21
   PubMed Web of Science ®Google Scholar
• Herman WH, Zimmet P. Type 2 diabetes: an epidemic requiring global attention and urgent action. Diabetes Care 2012;35(5):943-4
   PubMed Web of Science ®Google Scholar
• Scott EM, Carter AM, Findlay JB. The application of proteomics to diabetes. Diab Vasc Dis Res 2005;2(2):54-60
   PubMedGoogle Scholar
• Chen X, Wei S, Yang F. Mitochondria in the pathogenesis of diabetes: a proteomic view. Protein Cell 2012;3(9):648-60
   PubMed Web of Science ®Google Scholar
• Rubino F. Is type 2 diabetes an operable intestinal disease? A provocative yet reasonable hypothesis. Diabetes Care 2008;31(Suppl 2):S290-6
   PubMedGoogle Scholar
• Jovanovic L, Pettitt DJ. Gestational diabetes mellitus. JAMA 2001;286(20):2516-18
   PubMed Web of Science ®Google Scholar
• Chu SY, Callaghan WM, Kim SY, et al. Maternal obesity and risk of gestational diabetes mellitus. Diabetes Care 2007;30(8):2070-6
   PubMed Web of Science ®Google Scholar
• Dabelea D, Snell-Bergeon JK, Hartsfield CL, et al. Increasing prevalence of gestational diabetes mellitus (GDM) over time and by birth cohort: Kaiser Permanente of Colorado GDM Screening Program. Diabetes Care 2005;28(3):579-84
   PubMed Web of Science ®Google Scholar
• Gil A, Olza J, Gil-Campos M, et al. Is adipose tissue metabolically different at different sites? Int J Pediatr Obes 2011;6(Suppl 1):13-20
   PubMedGoogle Scholar
• Ahima RS, Flier JS. Adipose tissue as an endocrine organ. Trends Endocrinol Metab 2000;11(8):327-32
   PubMed Web of Science ®Google Scholar
• Kershaw EE, Flier JS. Adipose tissue as an endocrine organ. J Clin Endocrinol Metab 2004;89(6):2548-56
   PubMed Web of Science ®Google Scholar
• Rajala MW, Scherer PE. Minireview: the adipocyte – at the crossroads of energy homeostasis, inflammation, and atherosclerosis. Endocrinology 2003;144(9):3765-73
   PubMed Web of Science ®Google Scholar
• Ibrahim MM. Subcutaneous and visceral adipose tissue: structural and functional differences. Obes Rev 2010;11(1):11-18
   PubMed Web of Science ®Google Scholar
• Newton BW, Cologna SM, Moya C, et al. Proteomic analysis of 3T3-L1 adipocyte mitochondria during differentiation and enlargement. J Proteome Res 2011;10(10):4692-702
   PubMed Web of Science ®Google Scholar
• Sun K, Kusminski CM, Scherer PE. Adipose tissue remodeling and obesity. J Clin Invest 2011;121(6):2094-101
   PubMed Web of Science ®Google Scholar
• Kim DH, Puri N, Sodhi K, et al. Cyclooxygenase-2 dependent metabolism of 20-HETE increases adiposity and adipocyte enlargement in mesenchymal stem cell-derived adipocytes. J Lipid Res 2013;54(3):786-93
   PubMed Web of Science ®Google Scholar
• Wisse BE. The inflammatory syndrome: the role of adipose tissue cytokines in metabolic disorders linked to obesity. J Am Soc Nephrol 2004;15(11):2792-800
   PubMed Web of Science ®Google Scholar
• Hajer GR, van Haeften TW, Visseren FL. Adipose tissue dysfunction in obesity, diabetes, and vascular diseases. Eur Heart J 2008;29(24):2959-71
   PubMed Web of Science ®Google Scholar
• Furukawa S, Fujita T, Shimabukuro M, et al. Increased oxidative stress in obesity and its impact on metabolic syndrome. J Clin Invest 2004;114:1752-61
   PubMed Web of Science ®Google Scholar
• Sanchez JC, Converset V, Nolan A, et al. Effect of rosiglitazone on the differential expression of obesity and insulin resistance associated proteins in lep/lep mice. Proteomics 2003;3(8):1500-20
   PubMed Web of Science ®Google Scholar
• Enerback S. Human brown adipose tissue. Cell Metab 2010;11(4):248-52
   PubMed Web of Science ®Google Scholar
• Enerback S. The origins of brown adipose tissue. N Engl J Med 2009;360(19):2021-3
   PubMed Web of Science ®Google Scholar
• Virtanen KA, Lidell ME, Orava J, et al. Functional brown adipose tissue in healthy adults. N Engl J Med 2009;360(15):1518-25
   PubMed Web of Science ®Google Scholar
• Lowell BB, S-Susulic V, Hamann A, et al. Development of obesity in transgenic mice after genetic ablation of brown adipose tissue. Nature 1993;366(6457):740-2
   PubMed Web of Science ®Google Scholar
• Moitra J, Mason MM, Olive M, et al. Life without white fat: a transgenic mouse. Genes Dev 1998;12(20):3168-81
   PubMed Web of Science ®Google Scholar
• Donohoe CL, Doyle SL, Reynolds JV. Visceral adiposity, insulin resistance and cancer risk. Diabetol Metab Syndr 2011;3:12
   PubMed Web of Science ®Google Scholar
• Sogabe M, Okahisa T, Hibino S, Yamanoi A. Usefulness of differentiating metabolic syndrome into visceral fat type and subcutaneous fat type using ultrasonography in Japanese males. J Gastroenterol 2012;47(3):293-9
   PubMed Web of Science ®Google Scholar
• Goldstein BJ. Insulin resistance as the core defect in type 2 diabetes mellitus. Am J Cardiol 2002;90(5A):3G-10G
   PubMed Web of Science ®Google Scholar
• Guilherme A, Virbasius JV, Puri V, Czech MP. Adipocyte dysfunctions linking obesity to insulin resistance and type 2 diabetes. Nat Rev Mol Cell Biol 2008;9(5):367-77
   PubMed Web of Science ®Google Scholar
• Arioglu E, Rother KI, Reitman ML, et al. Lipoatrophy syndromes: when ‘too little fat' is a clinical problem. Pediatr Diabetes 2000;1(3):155-68
   PubMedGoogle Scholar
• Oral EA, Simha V, Ruiz E, et al. Leptin-replacement therapy for lipodystrophy. N Engl J Med 2002;346(8):570-8
   PubMed Web of Science ®Google Scholar
• Shoelson SE, Lee J, Goldfine AB. Inflammation and insulin resistance. J Clin Invest 2006;116(7):1793-801
   PubMed Web of Science ®Google Scholar
• Bergmann K, Sypniewska G. Diabetes as a complication of adipose tissue dysfunction. Is there a role for potential new biomarkers? Clin Chem Lab Med 2013;51(1):177-85
   PubMed Web of Science ®Google Scholar
• Boden G, Duan X, Homko C, et al. Increase in endoplasmic reticulum stress-related proteins and genes in adipose tissue of obese, insulin-resistant individuals. Diabetes 2008;57(9):2438-44
   PubMed Web of Science ®Google Scholar
• Murri M, Insenser M, Bernal-Lopez MR, et al. Proteomic analysis of visceral adipose tissue in pre-obese patients with type 2 diabetes. Mol Cell Endocrinol 2013;376(1-2):99-106
   PubMed Web of Science ®Google Scholar
• Oliva K, Barker G, Rice GE, et al. 2D-DIGE to identify proteins associated with gestational diabetes in omental adipose tissue. J Endocrinol 2013;218(2):165-78
   PubMed Web of Science ®Google Scholar
• Schmid GM, Converset V, Walter N, et al. Effect of high-fat diet on the expression of proteins in muscle, adipose tissues, and liver of C57BL/6 mice. Proteomics 2004;4(8):2270-82
   PubMed Web of Science ®Google Scholar
• Insenser M, Montes-Nieto R, Murri M, Escobar-Morreale HF. Proteomic and metabolomic approaches to the study of polycystic ovary syndrome. Mol Cell Endocrinol 2013;370(1-2):65-77
   PubMed Web of Science ®Google Scholar
• Kim SJ, Chae S, Kim H, et al. A protein profile of visceral adipose tissues linked to early pathogenesis of type 2 diabetes mellitus. Mol Cell Proteomics 2014;13(3):811-22
   PubMed Web of Science ®Google Scholar
• Berti DA, Russo LC, Castro LM, et al. Identification of intracellular peptides in rat adipose tissue: insights into insulin resistance. Proteomics 2012;12(17):2668-81
   PubMed Web of Science ®Google Scholar
• Ho JH, Lee OK, Fu YJ, et al. An iTRAQ proteomic study reveals an association between diet-induced enhanced fatty acid metabolism and the development of glucose intolerance in prediabetic mice. J Proteome Res 2013;12(3):1120-33
   PubMed Web of Science ®Google Scholar
• Aggarwal K, Choe LH, Lee KH. Shotgun proteomics using the iTRAQ isobaric tags. Brief Funct Genomic Proteomic 2006;5(2):112-20
   PubMedGoogle Scholar
• Abdallah C, Dumas-Gaudot E, Renaut J, Sergeant K. Gel-based and gel-free quantitative proteomics approaches at a glance. Int J Plant Genomics 2012;2012:494572
   PubMedGoogle Scholar
• Coombs KM. Quantitative proteomics of complex mixtures. Expert Rev Proteomics 2011;8(5):659-77
   PubMed Web of Science ®Google Scholar
• Walther TC, Mann M. Mass spectrometry-based proteomics in cell biology. J Cell Biol 2010;190(4):491-500
   PubMed Web of Science ®Google Scholar
• Chandramouli K, Qian PY. Proteomics: challenges, techniques and possibilities to overcome biological sample complexity. Hum Genomics Proteomics 2009;2009:239204
   PubMedGoogle Scholar
• Gorg A, Weiss W, Dunn MJ. Current two-dimensional electrophoresis technology for proteomics. Proteomics 2004;4(12):3665-85
   PubMed Web of Science ®Google Scholar
• The UniProt Consortium. Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res 2014;42:D191-8
   PubMed Web of Science ®Google Scholar
• Dimmer EC, Huntley RP, Alam-Faruque Y, et al. The UniProt-GO Annotation database in 2011. Nucleic Acids Res 2012;40(Database issue):D565-70
   PubMedGoogle Scholar
• Dennis G Jr, Sherman BT, Hosack DA, et al. DAVID: database for Annotation, Visualization, and Integrated Discovery. Genome Biol 2003;4(5):P3
   PubMed Web of Science ®Google Scholar
• Thomas PD, Campbell MJ, Kejariwal A, et al. PANTHER: a library of protein families and subfamilies indexed by function. Genome Res 2003;13(9):2129-41
   PubMed Web of Science ®Google Scholar
• Catalano PM, Kirwan JP, Haugel-de Mouzon S, King J. Gestational diabetes and insulin resistance: role in short- and long-term implications for mother and fetus. J Nutr 2003;133(5 Suppl 2):1674S-83S
   PubMed Web of Science ®Google Scholar
• Boden G. Free fatty acids, insulin resistance, and type 2 diabetes mellitus. Proc Assoc Am Physicians 1999;111(3):241-8
   PubMedGoogle Scholar
• Randle PJ, Garland PB, Hales CN, Newsholme EA. The glucose fatty-acid cycle. Its role in insulin sensitivity and the metabolic disturbances of diabetes mellitus. Lancet 1963;1(7285):785-9
   PubMed Web of Science ®Google Scholar
• Griffin ME, Marcucci MJ, Cline GW, et al. Free fatty acid-induced insulin resistance is associated with activation of protein kinase C theta and alterations in the insulin signaling cascade. Diabetes 1999;48(6):1270-4
   PubMed Web of Science ®Google Scholar
• Kim JA, Wei Y, Sowers JR. Role of mitochondrial dysfunction in insulin resistance. Circ Res 2008;102(4):401-14
   PubMed Web of Science ®Google Scholar
• Patti ME, Corvera S. The role of mitochondria in the pathogenesis of type 2 diabetes. Endocr Rev 2010;31(3):364-95
   PubMed Web of Science ®Google Scholar
• Diaz-Ramos A, Roig-Borrellas A, Garcia-Melero A. Lopez-Alemany R. alpha-Enolase, a multifunctional protein: its role on pathophysiological situations. J Biomed Biotechnol 2012;2012:156795
   PubMedGoogle Scholar
• Xiangdong W, Shaw MA, Patel V, et al. α-Enolase, Identified by a Thiol Proteome Screen, Is a Novel Cellular Target of Insulin-Induced Reactive Oxygen Species (ROS) that Undergoes Insulin-Stimulated Translocation to the Plasma Membrane. Diabetes 2007;56(Suppl 1):pA37
   Google Scholar
• Oort PJ, Knotts TA, Grino M, et al. Gamma-synuclein is an adipocyte-neuron gene coordinately expressed with leptin and increased in human obesity. J Nutr 2008;138(5):841-8
   PubMed Web of Science ®Google Scholar
• Millership S, Ninkina N, Guschina IA, et al. Increased lipolysis and altered lipid homeostasis protect gamma-synuclein-null mutant mice from diet-induced obesity. Proc Natl Acad Sci USA 2012;109(51):20943-8
   PubMed Web of Science ®Google Scholar
• Kregel KC. Heat shock proteins: modifying factors in physiological stress responses and acquired thermotolerance. J Appl Physiol (1985) 2002;92(5):2177-86
   PubMed Web of Science ®Google Scholar
• Gulden E, Marker T, Kriebel J, et al. Heat shock protein 60: evidence for receptor-mediated induction of proinflammatory mediators during adipocyte differentiation. FEBS Lett 2009;583(17):2877-81
   PubMed Web of Science ®Google Scholar
• Gulden E, Mollerus S, Bruggemann J, et al. Heat shock protein 60 induces inflammatory mediators in mouse adipocytes. FEBS Lett 2008;582(18):2731-6
   PubMed Web of Science ®Google Scholar
• Marker T, Sell H, Zillessen P, et al. Heat shock protein 60 as a mediator of adipose tissue inflammation and insulin resistance. Diabetes 2012;61(3):615-25
   PubMed Web of Science ®Google Scholar
• Hirata A, Kishida K, Nakatsuji H, et al. High serum C1q-adiponectin/total adiponectin ratio correlates with coronary artery disease in Japanese type 2 diabetics. Metabolism 2013;62(4):578-85
   PubMed Web of Science ®Google Scholar
• Ortega FJ, Sabater M, Moreno-Navarrete JM, et al. Serum and urinary concentrations of calprotectin as markers of insulin resistance and type 2 diabetes. Eur J Endocrinol 2012;167(4):569-78
   PubMed Web of Science ®Google Scholar
• Zhang D, Liu ZX, Choi CS, et al. Mitochondrial dysfunction due to long-chain Acyl-CoA dehydrogenase deficiency causes hepatic steatosis and hepatic insulin resistance. Proc Natl Acad Sci USA 2007;104(43):17075-80
   PubMed Web of Science ®Google Scholar
• Alligier M, Meugnier E, Debard C, et al. Subcutaneous adipose tissue remodeling during the initial phase of weight gain induced by overfeeding in humans. J Clin Endocrinol Metab 2012;97(2):E183-92
   PubMed Web of Science ®Google Scholar
• McCarthy AM, Spisak KO, Brozinick JT, Elmendorf JS. Loss of cortical actin filaments in insulin-resistant skeletal muscle cells impairs GLUT4 vesicle trafficking and glucose transport. Am J Physiol Cell Physiol 2006;291(5):C860-8
   PubMed Web of Science ®Google Scholar
• Tsakiridis T, Vranic M, Klip A. Disassembly of the actin network inhibits insulin-dependent stimulation of glucose transport and prevents recruitment of glucose transporters to the plasma membrane. J Biol Chem 1994;269(47):29934-42
   PubMed Web of Science ®Google Scholar
• Kanzaki M, Pessin JE. Insulin-stimulated GLUT4 translocation in adipocytes is dependent upon cortical actin remodeling. J Biol Chem 2001;276(45):42436-44
   PubMed Web of Science ®Google Scholar
• Brebner JA, Stockley RA. Polyclonal free light chains: a biomarker of inflammatory disease or treatment target? F1000 Med Rep 2013;5:4
   PubMedGoogle Scholar
• Dandona P, Aljada A, Bandyopadhyay A. Inflammation: the link between insulin resistance, obesity and diabetes. Trends Immunol 2004;25(1):4-7
   PubMed Web of Science ®Google Scholar
• Tinahones FJ, Coin Araguez L, Murri M, et al. Caspase Induction and BCL2 Inhibition in Human Adipose Tissue: a potential relationship with insulin signaling alteration. Diabetes Care 2013;36(3):513-21
   PubMed Web of Science ®Google Scholar
• Barbarroja N, Lopez-Pedrera R, Mayas MD, et al. The obese healthy paradox: is inflammation the answer? Biochem J 2010;430(1):141-9
   PubMed Web of Science ®Google Scholar
• Hutchison CA, Harding S, Hewins P, et al. Quantitative assessment of serum and urinary polyclonal free light chains in patients with chronic kidney disease. Clin J Am Soc Nephrol 2008;3(6):1684-90
   PubMed Web of Science ®Google Scholar
• Wang F, Kohan AB, Kindel TL, et al. Apolipoprotein A-IV improves glucose homeostasis by enhancing insulin secretion. Proc Natl Acad Sci USA 2012;109(24):9641-6
   PubMed Web of Science ®Google Scholar
• Davalos D, Akassoglou K. Fibrinogen as a key regulator of inflammation in disease. Semin Immunopathol 2012;34(1):43-62
   PubMed Web of Science ®Google Scholar
• Koulmanda M, Bhasin M, Fan Z, et al. Alpha 1-antitrypsin reduces inflammation and enhances mouse pancreatic islet transplant survival. Proc Natl Acad Sci USA 2012;109(38):15443-8
   PubMed Web of Science ®Google Scholar
• Ewing MM, de Vries MR, Nordzell M, et al. Annexin A5 therapy attenuates vascular inflammation and remodeling and improves endothelial function in mice. Arterioscler Thromb Vasc Biol 2011;31(1):95-101
   PubMed Web of Science ®Google Scholar
• Lappas M. Activation of inflammasomes in adipose tissue of women with gestational diabetes. Mol Cell Endocrinol 2013;382(1):74-83
   PubMed Web of Science ®Google Scholar
• Vrachnis N, Belitsos P, Sifakis S, et al. Role of adipokines and other inflammatory mediators in gestational diabetes mellitus and previous gestational diabetes mellitus. Int J Endocrinol 2012;2012:549748
   PubMed Web of Science ®Google Scholar
• Ruskovska T, Bernlohr DA. Oxidative stress and protein carbonylation in adipose tissue - Implications for insulin resistance and diabetes mellitus. J Proteomics 2013;92:323-34
   PubMed Web of Science ®Google Scholar
• Roth J, Vogl T, Sorg C, Sunderkotter C. Phagocyte-specific S100 proteins: a novel group of proinflammatory molecules. Trends Immunol 2003;24(4):155-8
   PubMed Web of Science ®Google Scholar
• Gebhardt C, Nemeth J, Angel P, Hess J.S100A8 and S100A9 in inflammation and cancer. Biochem Pharmacol 2006;72(11):1622-31
   PubMed Web of Science ®Google Scholar
• Ortega FJ, Mercader JM, Moreno-Navarrete JM, et al. Targeting the association of calgranulin B (S100A9) with insulin resistance and type 2 diabetes. J Mol Med (Berl) 2013;91(4):523-34
   PubMed Web of Science ®Google Scholar
• Khan T, Muise ES, Iyengar P, et al. Metabolic dysregulation and adipose tissue fibrosis: role of collagen VI. Mol Cell Biol 2009;29(6):1575-91
   PubMed Web of Science ®Google Scholar
• Spencer M, Yao-Borengasser A, Unal R, et al. Adipose tissue macrophages in insulin-resistant subjects are associated with collagen VI and fibrosis and demonstrate alternative activation. Am J Physiol Endocrinol Metab 2010;299(6):E1016-27
   PubMed Web of Science ®Google Scholar
• Pasarica M, Gowronska-Kozak B, Burk D, et al. Adipose tissue collagen VI in obesity. J Clin Endocrinol Metab 2009;94(12):5155-62
   PubMed Web of Science ®Google Scholar
• Spiro MJ, Crowley TJ. Increased rat myocardial type VI collagen in diabetes mellitus and hypertension. Diabetologia 1993;36(2):93-8
   PubMed Web of Science ®Google Scholar
• Janssen ME, Kim E, Liu H, et al. Three-dimensional structure of vinculin bound to actin filaments. Mol Cell 2006;21(2):271-81
   PubMed Web of Science ®Google Scholar
• Yohannes E, Chang J, Christ GJ, et al. Proteomics analysis identifies molecular targets related to diabetes mellitus-associated bladder dysfunction. Mol Cell Proteomics 2008;7(7):1270-85
   PubMed Web of Science ®Google Scholar
• Peinado JR, Pardo M, de la Rosa O, Malagon MM. Proteomic characterization of adipose tissue constituents, a necessary step for understanding adipose tissue complexity. Proteomics 2012;12(4-5):607-20
   PubMed Web of Science ®Google Scholar